Wall clock time and date at job start Tue Mar 31 2020 20:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87337 * 2 1 4 4 C 1.54328 * 109.88457 * 238.98761 * 2 1 3 5 5 H 1.09006 * 110.71536 * 336.74991 * 4 2 1 6 6 N 1.46899 * 110.72191 * 100.02319 * 4 2 1 7 7 C 1.46897 * 111.00076 * 205.00323 * 6 4 2 8 8 C 1.52997 * 109.47243 * 180.02562 * 7 6 4 9 9 N 1.46506 * 109.47060 * 179.97438 * 8 7 6 10 10 C 1.34942 * 126.03462 * 124.71562 * 9 8 7 11 11 C 1.35319 * 107.74703 * 179.84092 * 10 9 8 12 12 C 1.39873 * 107.91457 * 0.42202 * 11 10 9 13 13 N 1.30831 * 108.20764 * 359.73889 * 12 11 10 14 14 C 1.55403 * 102.82774 * 218.48319 * 4 2 1 15 15 C 1.54903 * 101.66790 * 35.33394 * 14 4 2 16 16 N 1.47022 * 109.88675 * 121.01761 * 2 1 3 17 17 C 1.34778 * 125.64817 * 298.32564 * 16 2 1 18 18 O 1.21283 * 119.99580 * 359.97438 * 17 16 2 19 19 C 1.50693 * 120.00059 * 179.97438 * 17 16 2 20 20 S 1.81003 * 109.46932 * 179.97438 * 19 17 16 21 21 C 1.76207 * 99.99996 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99271 * 359.97438 * 21 20 19 23 23 C 1.38797 * 119.99940 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00156 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99856 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47192 * 59.99818 * 25 23 21 27 27 H 1.48494 * 109.47305 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46941 * 300.00140 * 25 23 21 29 29 H 1.09002 * 109.47153 * 300.69831 * 1 2 3 30 30 H 1.09001 * 109.46832 * 180.70022 * 1 2 3 31 31 H 1.09004 * 109.47261 * 60.70003 * 1 2 3 32 32 H 1.00903 * 110.99997 * 81.04925 * 6 4 2 33 33 H 1.09008 * 109.47130 * 300.00379 * 7 6 4 34 34 H 1.08997 * 109.47522 * 59.99750 * 7 6 4 35 35 H 1.08998 * 109.47181 * 299.99650 * 8 7 6 36 36 H 1.08997 * 109.47291 * 59.99967 * 8 7 6 37 37 H 1.08008 * 126.12997 * 359.97438 * 10 9 8 38 38 H 1.08001 * 126.04511 * 180.16580 * 11 10 9 39 39 H 1.07999 * 125.89705 * 179.72020 * 12 11 10 40 40 H 1.08998 * 110.88682 * 277.25916 * 14 4 2 41 41 H 1.09002 * 111.06681 * 153.49006 * 14 4 2 42 42 H 1.09002 * 110.36788 * 204.23581 * 15 14 4 43 43 H 1.09000 * 110.46282 * 81.96139 * 15 14 4 44 44 H 1.09001 * 109.47183 * 299.99774 * 19 17 16 45 45 H 1.08997 * 109.46978 * 59.99800 * 19 17 16 46 46 H 0.96996 * 119.99579 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 1 1.3051 -1.4437 -1.6203 6 7 2.4566 0.2019 -2.2901 7 6 2.3871 -0.4191 -3.6196 8 6 2.8123 0.5981 -4.6804 9 7 2.7436 -0.0215 -6.0063 10 6 2.0485 0.4440 -7.0650 11 6 2.2472 -0.4092 -8.0964 12 6 3.0849 -1.4365 -7.6497 13 7 3.3831 -1.2051 -6.3970 14 6 3.2876 -1.5152 -0.6903 15 6 2.8146 -1.8784 0.7393 16 7 2.0301 -0.7124 1.1849 17 6 1.8086 -0.3579 2.4662 18 8 1.1459 0.6263 2.7171 19 6 2.3844 -1.1845 3.5869 20 16 1.9153 -0.4562 5.1762 21 6 2.6989 -1.5890 6.2751 22 1 3.2581 -2.4245 5.8807 23 6 2.5973 -1.4075 7.6474 24 7 1.9152 -0.3894 8.1280 25 14 3.4274 -2.6088 8.8124 26 1 4.8905 -2.6138 8.5584 27 1 3.1694 -2.1963 10.2153 28 1 2.8817 -3.9718 8.5893 29 1 -0.3633 0.5246 0.8837 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3634 0.5029 -0.8962 32 1 3.3790 0.5692 -2.1103 33 1 3.0549 -1.2800 -3.6538 34 1 1.3654 -0.7440 -3.8160 35 1 2.1448 1.4591 -4.6464 36 1 3.8341 0.9225 -4.4839 37 1 1.4438 1.3387 -7.0863 38 1 1.8291 -0.3161 -9.0878 39 1 3.4263 -2.2758 -8.2373 40 1 4.1654 -0.8697 -0.6593 41 1 3.4859 -2.4127 -1.2762 42 1 3.6717 -2.0319 1.3950 43 1 2.1892 -2.7708 0.7185 44 1 1.9971 -2.2014 3.5244 45 1 3.4710 -1.2036 3.5031 46 1 1.8440 -0.2628 9.0870 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331858973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:13 Heat of formation + Delta-G solvation = 26.356732 kcal Electronic energy + Delta-G solvation = -25879.137661 eV Core-core repulsion = 22123.842322 eV Total energy + Delta-G solvation = -3755.295339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.97004 -41.30694 -39.09136 -36.79056 -34.59884 -34.21509 -32.75213 -31.85834 -30.96149 -30.05202 -28.47634 -27.66060 -25.87121 -23.90367 -23.75617 -22.15790 -21.91010 -21.34600 -20.34708 -19.47460 -18.28410 -17.93990 -17.52332 -16.89122 -16.75803 -16.43262 -16.24828 -16.03161 -15.59639 -15.24842 -14.98943 -14.71747 -14.53564 -14.46713 -14.23717 -14.06667 -13.76285 -13.63105 -13.50437 -13.22673 -13.17870 -13.00655 -12.90879 -12.86238 -12.69285 -12.54514 -12.42276 -11.97624 -11.80741 -11.71817 -11.53531 -11.13979 -10.89136 -10.35043 -10.30000 -9.72496 -9.49836 -9.47623 -8.69042 -8.35511 -6.14443 1.02172 1.22278 1.43110 1.43287 1.53406 1.57523 1.61585 1.99650 2.05774 2.26446 2.98427 3.01182 3.22175 3.45769 3.49484 3.75563 3.87769 3.91412 4.02177 4.10974 4.17508 4.20618 4.23521 4.28829 4.38124 4.38566 4.42867 4.55982 4.61975 4.69286 4.71783 4.79941 4.86947 4.93801 4.97040 5.02892 5.06765 5.20016 5.24588 5.39936 5.44291 5.77393 5.86684 6.16264 6.18269 6.31076 6.39800 6.80991 7.05295 7.13633 8.73511 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034864 B = 0.001714 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.928246 B =16331.449153 C =16885.326823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.142 3.858 3 H 0.067 0.933 4 C 0.100 3.900 5 H 0.104 0.896 6 N -0.674 5.674 7 C 0.063 3.937 8 C 0.134 3.866 9 N -0.379 5.379 10 C 0.054 3.946 11 C -0.290 4.290 12 C 0.033 3.967 13 N -0.338 5.338 14 C -0.150 4.150 15 C 0.092 3.908 16 N -0.614 5.614 17 C 0.547 3.453 18 O -0.561 6.561 19 C -0.120 4.120 20 S -0.149 6.149 21 C -0.549 4.549 22 H 0.082 0.918 23 C 0.015 3.985 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.262 1.262 27 H -0.278 1.278 28 H -0.262 1.262 29 H 0.034 0.966 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.354 0.646 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.204 0.796 38 H 0.164 0.836 39 H 0.200 0.800 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 -2.893 -33.823 34.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 H 0.085 0.915 4 C -0.012 4.012 5 H 0.122 0.878 6 N -0.306 5.306 7 C -0.067 4.067 8 C 0.012 3.988 9 N -0.162 5.162 10 C -0.092 4.092 11 C -0.319 4.319 12 C -0.153 4.153 13 N -0.160 5.160 14 C -0.190 4.190 15 C -0.030 4.030 16 N -0.350 5.350 17 C 0.335 3.665 18 O -0.439 6.439 19 C -0.272 4.272 20 S 0.078 5.922 21 C -0.696 4.696 22 H 0.100 0.900 23 C -0.190 4.190 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.186 1.186 27 H -0.203 1.203 28 H -0.187 1.187 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.174 0.826 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.107 0.893 37 H 0.221 0.779 38 H 0.182 0.818 39 H 0.216 0.784 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.182 -1.359 -32.137 32.239 hybrid contribution 1.263 -1.750 0.176 2.165 sum 3.445 -3.109 -31.961 32.296 Atomic orbital electron populations 1.22012 0.94904 1.01923 1.02166 1.21531 0.94466 0.96347 0.83826 0.91459 1.22500 0.97061 0.92042 0.89569 0.87843 1.60172 1.34314 1.35604 1.00501 1.21997 1.01614 0.95593 0.87472 1.21740 1.04384 0.95599 0.77027 1.48833 1.37429 1.18978 1.10936 1.23208 0.97476 1.01311 0.87247 1.21880 1.09342 0.98528 1.02122 1.24374 0.97866 1.00596 0.92415 1.77289 1.21337 1.01588 1.15827 1.23513 0.98241 1.02603 0.94616 1.22546 0.95736 0.88240 0.96487 1.48508 1.53066 1.29547 1.03861 1.19720 0.79652 0.84397 0.82731 1.90679 1.40872 1.28804 1.83590 1.23312 1.04586 1.02825 0.96435 1.85573 1.70920 1.39944 0.95716 1.23166 1.38528 1.14216 0.93726 0.89968 1.26129 0.95700 0.97916 0.99277 1.70179 1.40059 1.30196 1.14254 0.85003 0.78776 0.77924 0.76287 1.18619 1.20300 1.18661 0.94712 0.92417 0.89699 0.82608 0.94211 0.90958 0.85760 0.89346 0.77921 0.81810 0.78350 0.89693 0.87574 0.89824 0.89834 0.87781 0.87696 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.10 71.98 0.66 -3.10 16 2 C 0.14 3.29 3.20 45.34 0.15 3.44 16 3 H 0.07 1.78 8.03 -2.38 -0.02 1.76 16 4 C 0.10 1.42 2.81 46.19 0.13 1.55 16 5 H 0.10 1.39 7.54 -2.38 -0.02 1.37 16 6 N -0.67 -7.62 6.31 -485.00 -3.06 -10.69 16 7 C 0.06 0.66 5.74 86.30 0.50 1.15 16 8 C 0.13 1.18 6.77 86.38 0.58 1.77 16 9 N -0.38 -5.04 3.68 -348.05 -1.28 -6.32 16 10 C 0.05 0.54 11.45 83.54 0.96 1.50 16 11 C -0.29 -3.21 10.80 21.99 0.24 -2.97 16 12 C 0.03 0.45 12.02 85.24 1.02 1.48 16 13 N -0.34 -6.02 12.42 -57.02 -0.71 -6.72 16 14 C -0.15 -1.88 6.68 32.07 0.21 -1.67 16 15 C 0.09 1.72 6.69 86.85 0.58 2.30 16 16 N -0.61 -17.05 3.06 -788.06 -2.42 -19.47 16 17 C 0.55 21.42 7.66 87.65 0.67 22.09 16 18 O -0.56 -27.06 14.91 -3.04 -0.05 -27.11 16 19 C -0.12 -4.98 5.16 71.23 0.37 -4.61 16 20 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 21 C -0.55 -31.66 9.50 67.95 0.65 -31.01 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.84 5.49 84.86 0.47 1.31 16 24 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16 25 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 26 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 27 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 28 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 29 H 0.03 1.13 6.89 -2.39 -0.02 1.11 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.70 8.14 -2.38 -0.02 1.69 16 32 H 0.35 3.45 8.21 -89.69 -0.74 2.71 16 33 H 0.04 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 35 H 0.12 0.64 8.07 -2.39 -0.02 0.63 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.20 0.58 8.06 -2.91 -0.02 0.56 16 38 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.08 1.02 7.77 -2.39 -0.02 1.00 16 41 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 1.54 7.48 -2.39 -0.02 1.52 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 44 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 45 H 0.10 3.94 7.84 -2.40 -0.02 3.92 16 46 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -81.75 395.35 1.05 -80.70 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.24 Total: 16.24 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 7.18 Total: -6.78 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -7.18 Total: -99.22 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.11 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -81.75 1.05 -80.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331858973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.056 kcal (2) G-P(sol) polarization free energy of solvation -81.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds