Wall clock time and date at job start Tue Mar 31 2020 20:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.45937 * 2 1 4 4 C 1.54378 * 110.41088 * 237.58824 * 2 1 3 5 5 H 1.09003 * 110.40691 * 336.30744 * 4 2 1 6 6 N 1.46497 * 110.32642 * 98.47262 * 4 2 1 7 7 C 1.34778 * 120.00309 * 202.09514 * 6 4 2 8 8 O 1.21276 * 119.99491 * 359.97438 * 7 6 4 9 9 C 1.50699 * 119.99778 * 180.02562 * 7 6 4 10 10 S 1.81004 * 109.46742 * 179.97438 * 9 7 6 11 11 C 1.76203 * 99.99907 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99736 * 359.97438 * 11 10 9 13 13 C 1.38798 * 119.99832 * 180.27629 * 11 10 9 14 14 N 1.31634 * 120.00296 * 359.72198 * 13 11 10 15 15 Si 1.86801 * 119.99859 * 179.72079 * 13 11 10 16 16 H 1.48496 * 109.47031 * 59.99840 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47038 * 299.99817 * 15 13 11 19 19 C 1.54255 * 105.06101 * 217.36881 * 4 2 1 20 20 C 1.54380 * 105.06055 * 0.02562 * 19 4 2 21 21 N 1.48554 * 104.59489 * 23.85178 * 20 19 4 22 22 C 1.46905 * 110.99982 * 200.95937 * 21 20 19 23 23 C 1.50693 * 109.47244 * 290.12732 * 22 21 20 24 24 C 1.35314 * 126.12593 * 94.68882 * 23 22 21 25 25 C 1.39872 * 107.92064 * 179.90507 * 24 23 22 26 26 N 1.30840 * 108.20239 * 0.35917 * 25 24 23 27 27 N 1.34949 * 126.12924 * 274.99752 * 23 22 21 28 28 C 1.46501 * 126.03482 * 359.97438 * 27 23 22 29 29 H 1.08999 * 109.47132 * 182.41498 * 1 2 3 30 30 H 1.08997 * 109.46605 * 302.41220 * 1 2 3 31 31 H 1.08992 * 109.47032 * 62.40755 * 1 2 3 32 32 H 0.97005 * 119.99622 * 22.08714 * 6 4 2 33 33 H 1.09000 * 109.47396 * 59.99696 * 9 7 6 34 34 H 1.09001 * 109.47080 * 299.99119 * 9 7 6 35 35 H 0.96995 * 120.00136 * 180.02562 * 14 13 11 36 36 H 1.09006 * 110.32841 * 118.89521 * 19 4 2 37 37 H 1.09000 * 110.32783 * 241.10388 * 19 4 2 38 38 H 1.09007 * 110.41319 * 142.63382 * 20 19 4 39 39 H 1.09006 * 110.40828 * 264.95617 * 20 19 4 40 40 H 1.08999 * 109.46707 * 50.12853 * 22 21 20 41 41 H 1.08999 * 109.46896 * 170.12716 * 22 21 20 42 42 H 1.07996 * 126.04211 * 0.03287 * 24 23 22 43 43 H 1.08000 * 125.90088 * 180.14652 * 25 24 23 44 44 H 1.08992 * 109.47215 * 89.99769 * 28 27 23 45 45 H 1.09002 * 109.46888 * 210.00157 * 28 27 23 46 46 H 1.08999 * 109.47209 * 329.99695 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7755 -1.2215 5 1 1.3242 -1.4879 -1.5776 6 7 2.4356 0.1538 -2.2928 7 6 2.4993 -0.2788 -3.5677 8 8 2.2532 -1.4374 -3.8279 9 6 2.8776 0.6771 -4.6696 10 16 2.8757 -0.1977 -6.2542 11 6 3.3387 1.1182 -7.3307 12 1 3.5246 2.1037 -6.9299 13 6 3.4585 0.8896 -8.6945 14 7 3.2315 -0.3115 -9.1830 15 14 3.9418 2.2864 -9.8367 16 1 5.2743 2.8098 -9.4422 17 1 4.0009 1.7857 -11.2335 18 1 2.9350 3.3739 -9.7423 19 6 3.3177 -1.5188 -0.7055 20 6 3.4287 -1.1304 0.7845 21 7 2.0477 -0.7472 1.1754 22 6 2.0561 0.1000 2.3755 23 6 2.4625 -0.7245 3.5696 24 6 3.7141 -0.8397 4.0708 25 6 3.6578 -1.6934 5.1773 26 7 2.4181 -2.0831 5.3301 27 7 1.6445 -1.4849 4.3271 28 6 0.2022 -1.6547 4.1345 29 1 -0.3633 -1.0267 0.0433 30 1 -0.3632 0.5508 0.8676 31 1 -0.3633 0.4760 -0.9107 32 1 2.6327 1.0805 -2.0846 33 1 3.8729 1.0778 -4.4773 34 1 2.1574 1.4946 -4.7046 35 1 3.3156 -0.4713 -10.1360 36 1 3.1861 -2.5962 -0.8067 37 1 4.2042 -1.1923 -1.2492 38 1 3.7687 -1.9813 1.3750 39 1 4.1085 -0.2872 0.9080 40 1 2.7655 0.9162 2.2390 41 1 1.0589 0.5087 2.5386 42 1 4.5998 -0.3562 3.6858 43 1 4.4937 -1.9838 5.7964 44 1 0.0214 -2.5004 3.4711 45 1 -0.2736 -1.8400 5.0975 46 1 -0.2142 -0.7501 3.6916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479698008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:37 Heat of formation + Delta-G solvation = 50.618144 kcal Electronic energy + Delta-G solvation = -26446.524028 eV Core-core repulsion = 22692.280743 eV Total energy + Delta-G solvation = -3754.243285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.57428 -40.10675 -38.46415 -34.70678 -33.53090 -32.44758 -32.24939 -31.72685 -30.01762 -28.68908 -27.01863 -25.70557 -25.45795 -25.21854 -21.86189 -21.33464 -20.74725 -20.29815 -19.78678 -17.85928 -17.19498 -16.61308 -16.31522 -16.07280 -15.55526 -15.19673 -14.82681 -14.80737 -14.73626 -14.41392 -14.26072 -13.87546 -13.75716 -13.45983 -13.11316 -12.95756 -12.76789 -12.62896 -12.59341 -12.36819 -12.20344 -11.92653 -11.69073 -11.48650 -11.37419 -11.06580 -11.05469 -10.93300 -10.84994 -10.78097 -9.84468 -9.63218 -9.43856 -9.08252 -9.01898 -8.93916 -8.78393 -8.26269 -6.52111 -6.23258 -3.94156 1.51740 2.23475 2.51681 2.96262 3.04632 3.21925 3.25157 3.28042 3.52026 3.81232 4.10927 4.16346 4.18948 4.25552 4.50680 4.63210 4.79554 4.80684 4.88117 4.92379 4.97652 5.06881 5.08095 5.11755 5.15679 5.21436 5.33912 5.41606 5.45105 5.49046 5.50788 5.61560 5.74481 5.79056 5.85146 5.91332 5.97591 6.01382 6.10442 6.30249 6.35941 6.49012 6.66740 6.71764 7.42879 7.57281 7.64927 8.33088 8.57523 9.21855 10.84046 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032825 B = 0.001871 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.809382 B =14957.960014 C =15123.597301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.055 3.945 3 H 0.061 0.939 4 C 0.150 3.850 5 H 0.100 0.900 6 N -0.734 5.734 7 C 0.534 3.466 8 O -0.514 6.514 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.136 4.136 20 C 0.037 3.963 21 N -0.500 5.500 22 C 0.105 3.895 23 C 0.098 3.902 24 C -0.270 4.270 25 C 0.045 3.955 26 N -0.299 5.299 27 N -0.360 5.360 28 C 0.103 3.897 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.396 0.604 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.269 0.731 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.144 0.856 43 H 0.182 0.818 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.133 2.953 28.096 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.053 4.053 3 H 0.078 0.922 4 C 0.044 3.956 5 H 0.119 0.881 6 N -0.389 5.389 7 C 0.320 3.680 8 O -0.387 6.387 9 C -0.304 4.304 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.175 4.175 20 C -0.091 4.091 21 N -0.225 5.225 22 C -0.025 4.025 23 C -0.031 4.031 24 C -0.301 4.301 25 C -0.140 4.140 26 N -0.121 5.121 27 N -0.142 5.142 28 C -0.038 4.038 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.230 0.770 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.162 0.838 43 H 0.199 0.801 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.874 -0.308 28.296 28.715 hybrid contribution 1.848 3.891 -0.905 4.402 sum -3.025 3.583 27.391 27.790 Atomic orbital electron populations 1.21735 0.92916 1.03017 1.01822 1.22873 0.96760 0.95977 0.89732 0.92151 1.21582 0.96733 0.91459 0.85843 0.88150 1.46129 1.72886 1.13257 1.06583 1.20308 0.76137 0.88975 0.82608 1.90709 1.47009 1.18421 1.82568 1.23536 1.04175 1.02159 1.00565 1.85410 1.90510 1.15102 0.92226 1.22823 1.54355 0.97120 0.94196 0.90997 1.24993 0.94834 0.96480 0.97269 1.70005 1.45839 1.20459 1.13939 0.86226 0.79087 0.81127 0.79070 1.19946 1.20796 1.19947 1.22784 0.98688 1.01817 0.94246 1.23150 0.88971 1.00751 0.96240 1.65400 1.19325 1.36124 1.01606 1.20787 1.02175 0.92719 0.86824 1.20768 0.91119 0.96400 0.94817 1.21241 0.96946 1.09755 1.02131 1.23798 0.95044 0.97268 0.97919 1.77381 1.03866 1.20395 1.10442 1.48438 1.08105 1.35309 1.22379 1.21829 0.75157 1.03465 1.03358 0.91319 0.92756 0.91531 0.76993 0.89278 0.89259 0.92107 0.90218 0.90355 0.89773 0.93381 0.91648 0.89403 0.83824 0.80119 0.90254 0.89621 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.30 37.16 0.35 -0.66 16 2 C 0.06 0.44 2.59 -66.06 -0.17 0.27 16 3 H 0.06 0.42 7.59 -51.93 -0.39 0.03 16 4 C 0.15 1.66 2.91 -66.55 -0.19 1.47 16 5 H 0.10 1.35 7.36 -51.93 -0.38 0.97 16 6 N -0.73 -9.01 5.04 -52.47 -0.26 -9.28 16 7 C 0.53 9.46 7.84 -10.99 -0.09 9.37 16 8 O -0.51 -11.25 15.56 5.56 0.09 -11.16 16 9 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 10 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 11 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 12 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -25.96 13.22 55.49 0.73 -25.22 16 15 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C -0.14 -1.47 6.78 -25.35 -0.17 -1.64 16 20 C 0.04 0.32 5.83 -2.18 -0.01 0.30 16 21 N -0.50 -3.99 5.04 -223.55 -1.13 -5.11 16 22 C 0.10 0.70 4.93 -4.98 -0.02 0.68 16 23 C 0.10 0.83 5.98 -82.27 -0.49 0.34 16 24 C -0.27 -2.30 10.54 -40.01 -0.42 -2.72 16 25 C 0.04 0.40 12.03 -17.36 -0.21 0.19 16 26 N -0.30 -3.27 12.58 30.63 0.39 -2.88 16 27 N -0.36 -3.34 4.01 -63.89 -0.26 -3.60 16 28 C 0.10 0.63 11.27 59.85 0.67 1.30 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.31 7.45 -51.93 -0.39 -0.08 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.40 3.72 8.34 -40.82 -0.34 3.38 16 33 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 34 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 38 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 39 H 0.05 0.37 7.83 -51.93 -0.41 -0.03 16 40 H 0.07 0.39 7.88 -51.93 -0.41 -0.02 16 41 H 0.09 0.48 6.44 -51.93 -0.33 0.15 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.18 1.08 8.06 -52.49 -0.42 0.65 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.35 7.15 -51.93 -0.37 -0.02 16 LS Contribution 393.38 15.07 5.93 5.93 Total: -1.00 -35.57 393.38 -9.30 -44.87 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.21 Total: 0.76 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -0.34 Total: -6.68 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.53 Total: -46.09 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.57 -9.30 -44.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479698008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.490 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds