Wall clock time and date at job start Tue Mar 31 2020 20:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.45937 * 2 1 4 4 C 1.54378 * 110.41088 * 237.58824 * 2 1 3 5 5 H 1.09003 * 110.40691 * 336.30744 * 4 2 1 6 6 N 1.46497 * 110.32642 * 98.47262 * 4 2 1 7 7 C 1.34778 * 120.00309 * 202.09514 * 6 4 2 8 8 O 1.21276 * 119.99491 * 359.97438 * 7 6 4 9 9 C 1.50699 * 119.99778 * 180.02562 * 7 6 4 10 10 S 1.81004 * 109.46742 * 179.97438 * 9 7 6 11 11 C 1.76203 * 99.99907 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99736 * 359.97438 * 11 10 9 13 13 C 1.38798 * 119.99832 * 180.27629 * 11 10 9 14 14 N 1.31634 * 120.00296 * 359.72198 * 13 11 10 15 15 Si 1.86801 * 119.99859 * 179.72079 * 13 11 10 16 16 H 1.48496 * 109.47031 * 59.99840 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47038 * 299.99817 * 15 13 11 19 19 C 1.54255 * 105.06101 * 217.36881 * 4 2 1 20 20 C 1.54380 * 105.06055 * 0.02562 * 19 4 2 21 21 N 1.48554 * 104.59489 * 23.85178 * 20 19 4 22 22 C 1.46905 * 110.99982 * 200.95937 * 21 20 19 23 23 C 1.50693 * 109.47244 * 290.12732 * 22 21 20 24 24 C 1.35314 * 126.12593 * 94.68882 * 23 22 21 25 25 C 1.39872 * 107.92064 * 179.90507 * 24 23 22 26 26 N 1.30840 * 108.20239 * 0.35917 * 25 24 23 27 27 N 1.34949 * 126.12924 * 274.99752 * 23 22 21 28 28 C 1.46501 * 126.03482 * 359.97438 * 27 23 22 29 29 H 1.08999 * 109.47132 * 182.41498 * 1 2 3 30 30 H 1.08997 * 109.46605 * 302.41220 * 1 2 3 31 31 H 1.08992 * 109.47032 * 62.40755 * 1 2 3 32 32 H 0.97005 * 119.99622 * 22.08714 * 6 4 2 33 33 H 1.09000 * 109.47396 * 59.99696 * 9 7 6 34 34 H 1.09001 * 109.47080 * 299.99119 * 9 7 6 35 35 H 0.96995 * 120.00136 * 180.02562 * 14 13 11 36 36 H 1.09006 * 110.32841 * 118.89521 * 19 4 2 37 37 H 1.09000 * 110.32783 * 241.10388 * 19 4 2 38 38 H 1.09007 * 110.41319 * 142.63382 * 20 19 4 39 39 H 1.09006 * 110.40828 * 264.95617 * 20 19 4 40 40 H 1.08999 * 109.46707 * 50.12853 * 22 21 20 41 41 H 1.08999 * 109.46896 * 170.12716 * 22 21 20 42 42 H 1.07996 * 126.04211 * 0.03287 * 24 23 22 43 43 H 1.08000 * 125.90088 * 180.14652 * 25 24 23 44 44 H 1.08992 * 109.47215 * 89.99769 * 28 27 23 45 45 H 1.09002 * 109.46888 * 210.00157 * 28 27 23 46 46 H 1.08999 * 109.47209 * 329.99695 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7755 -1.2215 5 1 1.3242 -1.4879 -1.5776 6 7 2.4356 0.1538 -2.2928 7 6 2.4993 -0.2788 -3.5677 8 8 2.2532 -1.4374 -3.8279 9 6 2.8776 0.6771 -4.6696 10 16 2.8757 -0.1977 -6.2542 11 6 3.3387 1.1182 -7.3307 12 1 3.5246 2.1037 -6.9299 13 6 3.4585 0.8896 -8.6945 14 7 3.2315 -0.3115 -9.1830 15 14 3.9418 2.2864 -9.8367 16 1 5.2743 2.8098 -9.4422 17 1 4.0009 1.7857 -11.2335 18 1 2.9350 3.3739 -9.7423 19 6 3.3177 -1.5188 -0.7055 20 6 3.4287 -1.1304 0.7845 21 7 2.0477 -0.7472 1.1754 22 6 2.0561 0.1000 2.3755 23 6 2.4625 -0.7245 3.5696 24 6 3.7141 -0.8397 4.0708 25 6 3.6578 -1.6934 5.1773 26 7 2.4181 -2.0831 5.3301 27 7 1.6445 -1.4849 4.3271 28 6 0.2022 -1.6547 4.1345 29 1 -0.3633 -1.0267 0.0433 30 1 -0.3632 0.5508 0.8676 31 1 -0.3633 0.4760 -0.9107 32 1 2.6327 1.0805 -2.0846 33 1 3.8729 1.0778 -4.4773 34 1 2.1574 1.4946 -4.7046 35 1 3.3156 -0.4713 -10.1360 36 1 3.1861 -2.5962 -0.8067 37 1 4.2042 -1.1923 -1.2492 38 1 3.7687 -1.9813 1.3750 39 1 4.1085 -0.2872 0.9080 40 1 2.7655 0.9162 2.2390 41 1 1.0589 0.5087 2.5386 42 1 4.5998 -0.3562 3.6858 43 1 4.4937 -1.9838 5.7964 44 1 0.0214 -2.5004 3.4711 45 1 -0.2736 -1.8400 5.0975 46 1 -0.2142 -0.7501 3.6916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479698008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:36 Heat of formation + Delta-G solvation = 24.476511 kcal Electronic energy + Delta-G solvation = -26447.657615 eV Core-core repulsion = 22692.280743 eV Total energy + Delta-G solvation = -3755.376871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.19056 -41.12928 -39.59280 -35.73401 -34.57396 -34.16462 -33.13035 -32.41519 -31.11493 -29.76224 -27.67760 -27.54283 -26.31580 -25.99121 -22.75860 -22.01065 -21.56154 -21.35039 -20.50959 -19.77790 -18.01483 -17.81125 -17.24936 -16.87620 -16.86474 -16.49536 -16.10728 -15.93779 -15.75411 -15.36663 -15.05137 -14.84856 -14.68485 -14.40931 -14.36488 -14.00975 -13.69565 -13.50148 -13.28361 -13.16062 -13.13012 -12.97414 -12.86172 -12.75601 -12.62874 -12.48183 -12.30184 -12.06437 -11.74855 -11.66266 -11.55225 -11.11989 -10.94159 -10.27128 -10.25867 -10.10554 -9.61793 -9.39960 -8.65503 -8.33566 -6.11580 0.89465 1.27674 1.44497 1.47633 1.56983 1.62450 1.70455 1.89363 2.23140 2.29265 3.00454 3.00540 3.33986 3.41060 3.49994 3.76009 3.84813 3.98533 4.01367 4.11830 4.17991 4.29405 4.32377 4.37853 4.43323 4.45246 4.52720 4.54556 4.69046 4.72280 4.79267 4.84710 4.86026 4.89296 5.01076 5.04216 5.10238 5.20718 5.36659 5.41545 5.42618 5.76843 5.79907 5.89666 6.15892 6.20473 6.51168 6.80078 7.07643 7.26763 8.75234 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032825 B = 0.001871 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.809382 B =14957.960014 C =15123.597301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.068 3.932 3 H 0.085 0.915 4 C 0.147 3.853 5 H 0.073 0.927 6 N -0.705 5.705 7 C 0.537 3.463 8 O -0.563 6.563 9 C -0.129 4.129 10 S -0.153 6.153 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.012 3.988 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.261 1.261 19 C -0.135 4.135 20 C 0.048 3.952 21 N -0.506 5.506 22 C 0.108 3.892 23 C 0.093 3.907 24 C -0.281 4.281 25 C 0.037 3.963 26 N -0.340 5.340 27 N -0.369 5.369 28 C 0.097 3.903 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.416 0.584 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.159 0.841 43 H 0.202 0.798 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.876 6.204 29.508 30.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.041 4.041 3 H 0.102 0.898 4 C 0.041 3.959 5 H 0.091 0.909 6 N -0.359 5.359 7 C 0.323 3.677 8 O -0.441 6.441 9 C -0.280 4.280 10 S 0.074 5.926 11 C -0.694 4.694 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.819 3.181 16 H -0.187 1.187 17 H -0.205 1.205 18 H -0.186 1.186 19 C -0.175 4.175 20 C -0.080 4.080 21 N -0.232 5.232 22 C -0.021 4.021 23 C -0.036 4.036 24 C -0.311 4.311 25 C -0.148 4.148 26 N -0.162 5.162 27 N -0.151 5.151 28 C -0.044 4.044 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.253 0.747 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.124 0.876 42 H 0.177 0.823 43 H 0.219 0.781 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.621 2.982 29.772 30.276 hybrid contribution 1.751 2.844 -1.203 3.550 sum -2.870 5.825 28.569 29.298 Atomic orbital electron populations 1.21725 0.92254 1.02658 1.02676 1.22786 0.97122 0.96366 0.87799 0.89759 1.21664 0.96401 0.91409 0.86424 0.90907 1.45807 1.70791 1.14430 1.04908 1.20043 0.75946 0.87852 0.83892 1.90703 1.49603 1.20301 1.83495 1.23371 1.06116 1.01899 0.96626 1.85612 1.90890 1.18373 0.97698 1.23175 1.54107 0.97364 0.94740 0.89824 1.26133 0.94543 0.99355 0.99207 1.70179 1.47217 1.23046 1.14340 0.85012 0.79282 0.77432 0.76324 1.18652 1.20539 1.18596 1.22705 0.98042 1.00651 0.96077 1.23015 0.89846 1.01110 0.94026 1.65359 1.18797 1.36951 1.02056 1.20880 1.03756 0.92351 0.85136 1.21122 0.91149 0.96190 0.95120 1.21533 0.97675 1.09831 1.02061 1.24258 0.95146 0.97003 0.98368 1.77320 1.04937 1.21942 1.12041 1.48704 1.09025 1.35215 1.22172 1.22035 0.74021 1.04512 1.03804 0.92540 0.90283 0.92102 0.74662 0.87213 0.87083 0.92040 0.92155 0.91197 0.90647 0.91595 0.89940 0.87584 0.82321 0.78135 0.90635 0.89173 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.30 71.98 0.67 -0.95 16 2 C 0.07 0.88 2.59 45.06 0.12 0.99 16 3 H 0.08 0.75 7.59 -2.39 -0.02 0.73 16 4 C 0.15 3.09 2.91 45.89 0.13 3.22 16 5 H 0.07 2.00 7.36 -2.39 -0.02 1.98 16 6 N -0.70 -15.98 5.04 -438.31 -2.21 -18.19 16 7 C 0.54 18.76 7.84 87.66 0.69 19.44 16 8 O -0.56 -25.43 15.56 -3.02 -0.05 -25.48 16 9 C -0.13 -4.87 6.16 71.24 0.44 -4.43 16 10 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 11 C -0.55 -30.71 9.50 67.95 0.65 -30.06 16 12 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 13 C 0.01 0.70 5.49 84.86 0.47 1.16 16 14 N -0.91 -55.70 13.22 21.65 0.29 -55.42 16 15 Si 1.00 43.01 29.55 68.60 2.03 45.04 16 16 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 19 C -0.14 -2.85 6.78 31.49 0.21 -2.64 16 20 C 0.05 0.73 5.83 86.45 0.50 1.23 16 21 N -0.51 -6.71 5.04 -861.17 -4.34 -11.06 16 22 C 0.11 1.05 4.93 85.55 0.42 1.47 16 23 C 0.09 1.38 5.98 41.40 0.25 1.62 16 24 C -0.28 -4.23 10.54 21.99 0.23 -3.99 16 25 C 0.04 0.62 12.03 85.24 1.03 1.65 16 26 N -0.34 -7.23 12.58 -57.02 -0.72 -7.94 16 27 N -0.37 -6.33 4.01 -356.05 -1.43 -7.76 16 28 C 0.10 1.03 11.27 127.77 1.44 2.47 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.58 7.45 -2.39 -0.02 0.56 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.42 6.31 8.34 -92.70 -0.77 5.54 16 33 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 34 H 0.11 3.72 8.14 -2.39 -0.02 3.71 16 35 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.07 1.58 7.95 -2.39 -0.02 1.56 16 38 H 0.08 1.32 8.12 -2.38 -0.02 1.30 16 39 H 0.07 0.80 7.83 -2.38 -0.02 0.78 16 40 H 0.08 0.58 7.88 -2.39 -0.02 0.56 16 41 H 0.11 0.68 6.44 -2.39 -0.02 0.66 16 42 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.11 0.59 7.15 -2.39 -0.02 0.58 16 Total: -1.00 -80.81 393.38 -0.14 -80.96 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.21 Total: 18.18 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 7.24 Total: -8.81 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -8.41 Total: -100.37 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.05 Total: -25.48 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -80.81 -0.14 -80.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479698008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.435 kcal (2) G-P(sol) polarization free energy of solvation -80.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds