Wall clock time and date at job start Tue Mar 31 2020 21:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47307 * 2 1 4 4 C 1.50702 * 109.46724 * 240.00387 * 2 1 3 5 5 O 1.21282 * 120.00073 * 239.99263 * 4 2 1 6 6 N 1.34773 * 120.00349 * 60.00143 * 4 2 1 7 7 C 1.46497 * 120.00083 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47269 * 185.65581 * 7 6 4 9 9 H 1.09000 * 109.99510 * 304.84298 * 8 7 6 10 10 C 1.54326 * 109.88078 * 65.93746 * 8 7 6 11 11 C 1.55444 * 102.96840 * 141.61473 * 10 8 7 12 12 C 1.54911 * 101.45054 * 324.51344 * 11 10 8 13 13 N 1.47016 * 109.88525 * 183.74498 * 8 7 6 14 14 C 1.36948 * 125.64711 * 61.61888 * 13 8 7 15 15 H 1.07998 * 119.99351 * 14.69489 * 14 13 8 16 16 C 1.38810 * 119.99933 * 194.68390 * 14 13 8 17 17 N 1.31618 * 120.00284 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99867 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46922 * 60.00755 * 18 16 14 20 20 H 1.48496 * 109.46874 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47197 * 300.00458 * 18 16 14 22 22 C 1.50698 * 109.47616 * 120.00323 * 2 1 3 23 23 C 1.38421 * 120.02133 * 59.71745 * 22 2 1 24 24 F 1.35100 * 120.01591 * 0.02562 * 23 22 2 25 25 C 1.38478 * 119.97378 * 179.79261 * 23 22 2 26 26 C 1.38207 * 120.02150 * 0.49129 * 25 23 22 27 27 C 1.38214 * 120.05329 * 359.74235 * 26 25 23 28 28 C 1.38418 * 120.02752 * 240.00357 * 22 2 1 29 29 F 1.35102 * 120.00800 * 359.97438 * 28 22 2 30 30 H 1.09000 * 109.46588 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46608 * 299.99505 * 1 2 3 32 32 H 1.08996 * 109.47179 * 59.99733 * 1 2 3 33 33 H 0.97008 * 119.99940 * 359.97438 * 6 4 2 34 34 H 1.09002 * 109.47158 * 65.65709 * 7 6 4 35 35 H 1.08996 * 109.47264 * 305.65474 * 7 6 4 36 36 H 1.09003 * 110.71643 * 259.97225 * 10 8 7 37 37 H 1.08998 * 110.72235 * 23.24671 * 10 8 7 38 38 H 1.08996 * 111.11476 * 206.46365 * 11 10 8 39 39 H 1.08996 * 111.01683 * 82.51954 * 11 10 8 40 40 H 1.08998 * 110.36962 * 278.11381 * 12 11 10 41 41 H 1.08999 * 110.37071 * 155.89635 * 12 11 10 42 42 H 0.97001 * 120.00690 * 179.97438 * 17 16 14 43 43 H 1.07998 * 119.99205 * 180.23480 * 25 23 22 44 44 H 1.07997 * 119.97785 * 179.76370 * 26 25 23 45 45 H 1.08000 * 119.98762 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7067 -0.2498 -2.4546 7 6 2.1954 -0.9401 -3.6508 8 6 1.8047 -0.1414 -4.8960 9 1 0.7277 0.0256 -4.9089 10 6 2.5459 1.2122 -4.9052 11 6 2.8956 1.4081 -6.4071 12 6 3.1853 -0.0484 -6.8480 13 7 2.2122 -0.8704 -6.1059 14 6 1.7626 -2.1083 -6.4812 15 1 0.8862 -2.5298 -6.0114 16 6 2.4332 -2.8212 -7.4655 17 7 3.5014 -2.3077 -8.0379 18 14 1.8203 -4.5101 -7.9770 19 1 0.4341 -4.3970 -8.4975 20 1 2.7045 -5.0573 -9.0371 21 1 1.8355 -5.4188 -6.8025 22 6 2.0325 -0.7104 1.2304 23 6 1.6936 -2.0340 1.4528 24 9 0.9126 -2.6897 0.5666 25 6 2.1594 -2.6871 2.5815 26 6 2.9540 -2.0150 3.4909 27 6 3.2890 -0.6920 3.2723 28 6 2.8283 -0.0383 2.1419 29 9 3.1554 1.2551 1.9286 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.1487 0.5387 -2.5436 34 1 1.7521 -1.9345 -3.7031 35 1 3.2807 -1.0283 -3.6015 36 1 1.8934 2.0115 -4.5540 37 1 3.4523 1.1597 -4.3021 38 1 3.7791 2.0353 -6.5259 39 1 2.0487 1.8210 -6.9550 40 1 4.2033 -0.3307 -6.5795 41 1 3.0330 -0.1572 -7.9218 42 1 3.9702 -2.8059 -8.7255 43 1 1.8983 -3.7209 2.7534 44 1 3.3137 -2.5239 4.3729 45 1 3.9103 -0.1679 3.9834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481048539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:58 Heat of formation + Delta-G solvation = -80.909070 kcal Electronic energy + Delta-G solvation = -29722.752914 eV Core-core repulsion = 25376.673043 eV Total energy + Delta-G solvation = -4346.079871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.25108 -49.03670 -39.98441 -38.73241 -37.58642 -34.44518 -34.22549 -32.46409 -30.50584 -30.10379 -29.47830 -28.46493 -25.31444 -24.69063 -23.84106 -23.07352 -22.17501 -20.36095 -19.96034 -19.42104 -18.31954 -17.82835 -17.01224 -16.57472 -16.27320 -15.89408 -15.71882 -15.61804 -15.39061 -15.07462 -14.81125 -14.58191 -14.32808 -13.96595 -13.81744 -13.42733 -13.25500 -12.95545 -12.66883 -12.43257 -12.32172 -12.13512 -12.06931 -11.87576 -11.75032 -11.66109 -11.30418 -11.11509 -10.93848 -10.76852 -10.24095 -10.12337 -9.95010 -9.83843 -9.72528 -9.57587 -9.08186 -8.92788 -8.65518 -8.55949 -6.83635 -5.76347 -3.13117 0.72415 0.79006 2.85473 3.06753 3.40478 3.45933 3.46347 3.50655 3.70433 4.09270 4.21201 4.40541 4.49690 4.53443 4.84676 4.89288 4.93925 5.05088 5.32966 5.39560 5.41181 5.48744 5.52002 5.54852 5.63084 5.67085 5.73683 5.79256 5.81629 5.90337 5.95431 6.06785 6.13827 6.24798 6.46058 6.53394 6.55716 6.63047 6.71697 6.82385 7.06745 7.51456 7.61153 7.78202 7.79192 8.25950 8.48120 9.17721 9.78328 10.45672 11.35596 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.002957 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.369691 B = 9468.074709 C =10547.044857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 H 0.111 0.889 4 C 0.514 3.486 5 O -0.533 6.533 6 N -0.719 5.719 7 C 0.110 3.890 8 C 0.152 3.848 9 H 0.037 0.963 10 C -0.126 4.126 11 C -0.148 4.148 12 C 0.172 3.828 13 N -0.588 5.588 14 C -0.235 4.235 15 H 0.075 0.925 16 C -0.001 4.001 17 N -0.916 5.916 18 Si 0.911 3.089 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C -0.137 4.137 23 C 0.164 3.836 24 F -0.120 7.120 25 C -0.168 4.168 26 C -0.063 4.063 27 C -0.169 4.169 28 C 0.134 3.866 29 F -0.131 7.131 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.395 0.605 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.254 0.746 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.168 7.815 22.452 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 H 0.129 0.871 4 C 0.298 3.702 5 O -0.409 6.409 6 N -0.370 5.370 7 C -0.015 4.015 8 C 0.044 3.956 9 H 0.055 0.945 10 C -0.164 4.164 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.313 5.313 14 C -0.363 4.363 15 H 0.093 0.907 16 C -0.198 4.198 17 N -0.562 5.562 18 Si 0.740 3.260 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.209 1.209 22 C -0.140 4.140 23 C 0.145 3.855 24 F -0.098 7.098 25 C -0.187 4.187 26 C -0.081 4.081 27 C -0.188 4.188 28 C 0.114 3.886 29 F -0.109 7.109 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.228 0.772 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.599 6.933 22.244 23.576 hybrid contribution -0.446 -0.468 -0.513 0.825 sum -4.045 6.465 21.731 23.030 Atomic orbital electron populations 1.21861 0.91456 1.03968 1.03117 1.20196 0.98269 1.00683 0.90332 0.87072 1.20189 0.80792 0.84802 0.84425 1.90725 1.37656 1.25940 1.86572 1.46057 1.53169 1.31882 1.05898 1.22245 0.99646 0.96976 0.82610 1.21128 0.96676 0.90893 0.86940 0.94522 1.22656 0.99726 0.96356 0.97675 1.23052 1.00086 1.00323 0.95257 1.21450 0.92058 0.84201 0.97560 1.44479 1.50330 1.17590 1.18876 1.18938 1.07481 0.91629 1.18278 0.90713 1.24913 0.96683 0.98322 0.99869 1.69925 1.19904 1.37597 1.28726 0.86228 0.77748 0.84001 0.77975 1.21046 1.21542 1.20939 1.19382 1.02616 0.94279 0.97687 1.17105 0.91724 0.89074 0.87636 1.91537 1.71040 1.80297 1.66891 1.21217 1.01451 1.01622 0.94441 1.20819 0.95409 0.93185 0.98658 1.21119 1.03887 0.96067 0.97767 1.17143 0.97214 0.79079 0.95140 1.91506 1.90753 1.33900 1.94748 0.91033 0.91318 0.91008 0.77151 0.91487 0.91650 0.92417 0.91863 0.92327 0.92297 0.95636 0.90964 0.93541 0.84015 0.84002 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.88 37.16 0.33 -1.10 16 2 C -0.07 -0.89 2.79 -92.92 -0.26 -1.15 16 3 H 0.11 1.17 7.13 -51.93 -0.37 0.80 16 4 C 0.51 8.30 6.60 -10.99 -0.07 8.22 16 5 O -0.53 -10.91 14.57 5.56 0.08 -10.83 16 6 N -0.72 -11.02 5.24 -60.29 -0.32 -11.34 16 7 C 0.11 2.17 5.09 -4.04 -0.02 2.15 16 8 C 0.15 3.02 3.20 -66.95 -0.21 2.80 16 9 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 10 C -0.13 -2.12 6.18 -24.74 -0.15 -2.27 16 11 C -0.15 -2.73 7.11 -24.42 -0.17 -2.91 16 12 C 0.17 4.13 5.41 -2.53 -0.01 4.12 16 13 N -0.59 -14.71 3.13 -162.57 -0.51 -15.22 16 14 C -0.23 -6.49 9.73 -15.06 -0.15 -6.63 16 15 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 16 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 17 N -0.92 -26.84 10.57 55.49 0.59 -26.25 16 18 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 C -0.14 -1.72 4.40 -104.49 -0.46 -2.18 16 23 C 0.16 2.11 6.14 -39.43 -0.24 1.87 16 24 F -0.12 -1.78 13.81 2.25 0.03 -1.75 16 25 C -0.17 -1.67 10.03 -39.50 -0.40 -2.07 16 26 C -0.06 -0.49 10.04 -39.60 -0.40 -0.89 16 27 C -0.17 -1.48 10.03 -39.50 -0.40 -1.87 16 28 C 0.13 1.49 7.25 -39.43 -0.29 1.20 16 29 F -0.13 -1.47 16.19 2.25 0.04 -1.43 16 30 H 0.07 0.80 6.29 -51.93 -0.33 0.47 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.59 7.56 -51.93 -0.39 0.20 16 33 H 0.40 4.74 7.80 -40.82 -0.32 4.42 16 34 H 0.07 1.51 7.88 -51.93 -0.41 1.10 16 35 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.07 7.79 -51.93 -0.40 0.66 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 41 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 371.23 15.07 5.59 5.59 Total: -1.00 -33.21 371.23 -8.86 -42.07 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.35 Total: 2.71 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -3.00 Total: -0.81 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.24 Total: -52.80 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.07 Total: -3.18 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.21 -8.86 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481048539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.843 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds