Wall clock time and date at job start Tue Mar 31 2020 21:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47307 * 2 1 4 4 C 1.50702 * 109.46724 * 240.00387 * 2 1 3 5 5 O 1.21282 * 120.00073 * 239.99263 * 4 2 1 6 6 N 1.34773 * 120.00349 * 60.00143 * 4 2 1 7 7 C 1.46497 * 120.00083 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47269 * 185.65581 * 7 6 4 9 9 H 1.09000 * 109.99510 * 304.84298 * 8 7 6 10 10 C 1.54326 * 109.88078 * 65.93746 * 8 7 6 11 11 C 1.55444 * 102.96840 * 141.61473 * 10 8 7 12 12 C 1.54911 * 101.45054 * 324.51344 * 11 10 8 13 13 N 1.47016 * 109.88525 * 183.74498 * 8 7 6 14 14 C 1.36948 * 125.64711 * 61.61888 * 13 8 7 15 15 H 1.07998 * 119.99351 * 14.69489 * 14 13 8 16 16 C 1.38810 * 119.99933 * 194.68390 * 14 13 8 17 17 N 1.31618 * 120.00284 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99867 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46922 * 60.00755 * 18 16 14 20 20 H 1.48496 * 109.46874 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47197 * 300.00458 * 18 16 14 22 22 C 1.50698 * 109.47616 * 120.00323 * 2 1 3 23 23 C 1.38421 * 120.02133 * 59.71745 * 22 2 1 24 24 F 1.35100 * 120.01591 * 0.02562 * 23 22 2 25 25 C 1.38478 * 119.97378 * 179.79261 * 23 22 2 26 26 C 1.38207 * 120.02150 * 0.49129 * 25 23 22 27 27 C 1.38214 * 120.05329 * 359.74235 * 26 25 23 28 28 C 1.38418 * 120.02752 * 240.00357 * 22 2 1 29 29 F 1.35102 * 120.00800 * 359.97438 * 28 22 2 30 30 H 1.09000 * 109.46588 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46608 * 299.99505 * 1 2 3 32 32 H 1.08996 * 109.47179 * 59.99733 * 1 2 3 33 33 H 0.97008 * 119.99940 * 359.97438 * 6 4 2 34 34 H 1.09002 * 109.47158 * 65.65709 * 7 6 4 35 35 H 1.08996 * 109.47264 * 305.65474 * 7 6 4 36 36 H 1.09003 * 110.71643 * 259.97225 * 10 8 7 37 37 H 1.08998 * 110.72235 * 23.24671 * 10 8 7 38 38 H 1.08996 * 111.11476 * 206.46365 * 11 10 8 39 39 H 1.08996 * 111.01683 * 82.51954 * 11 10 8 40 40 H 1.08998 * 110.36962 * 278.11381 * 12 11 10 41 41 H 1.08999 * 110.37071 * 155.89635 * 12 11 10 42 42 H 0.97001 * 120.00690 * 179.97438 * 17 16 14 43 43 H 1.07998 * 119.99205 * 180.23480 * 25 23 22 44 44 H 1.07997 * 119.97785 * 179.76370 * 26 25 23 45 45 H 1.08000 * 119.98762 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7067 -0.2498 -2.4546 7 6 2.1954 -0.9401 -3.6508 8 6 1.8047 -0.1414 -4.8960 9 1 0.7277 0.0256 -4.9089 10 6 2.5459 1.2122 -4.9052 11 6 2.8956 1.4081 -6.4071 12 6 3.1853 -0.0484 -6.8480 13 7 2.2122 -0.8704 -6.1059 14 6 1.7626 -2.1083 -6.4812 15 1 0.8862 -2.5298 -6.0114 16 6 2.4332 -2.8212 -7.4655 17 7 3.5014 -2.3077 -8.0379 18 14 1.8203 -4.5101 -7.9770 19 1 0.4341 -4.3970 -8.4975 20 1 2.7045 -5.0573 -9.0371 21 1 1.8355 -5.4188 -6.8025 22 6 2.0325 -0.7104 1.2304 23 6 1.6936 -2.0340 1.4528 24 9 0.9126 -2.6897 0.5666 25 6 2.1594 -2.6871 2.5815 26 6 2.9540 -2.0150 3.4909 27 6 3.2890 -0.6920 3.2723 28 6 2.8283 -0.0383 2.1419 29 9 3.1554 1.2551 1.9286 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.1487 0.5387 -2.5436 34 1 1.7521 -1.9345 -3.7031 35 1 3.2807 -1.0283 -3.6015 36 1 1.8934 2.0115 -4.5540 37 1 3.4523 1.1597 -4.3021 38 1 3.7791 2.0353 -6.5259 39 1 2.0487 1.8210 -6.9550 40 1 4.2033 -0.3307 -6.5795 41 1 3.0330 -0.1572 -7.9218 42 1 3.9702 -2.8059 -8.7255 43 1 1.8983 -3.7209 2.7534 44 1 3.3137 -2.5239 4.3729 45 1 3.9103 -0.1679 3.9834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481048539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:57 Heat of formation + Delta-G solvation = -101.501319 kcal Electronic energy + Delta-G solvation = -29723.645861 eV Core-core repulsion = 25376.673043 eV Total energy + Delta-G solvation = -4346.972818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.06025 -50.01527 -41.19422 -39.74300 -39.15356 -35.81121 -35.37034 -34.39921 -31.51016 -31.25630 -30.91073 -29.92079 -26.82866 -26.17721 -25.24936 -23.87248 -23.21234 -22.04009 -21.37269 -20.95591 -19.17795 -19.00123 -18.52600 -17.82026 -17.47540 -16.93418 -16.86870 -16.58533 -16.47972 -16.42902 -16.26532 -15.81360 -15.68616 -15.42702 -14.93987 -14.74065 -14.67190 -13.99683 -13.77706 -13.69614 -13.60027 -13.38472 -13.28050 -13.10944 -12.98498 -12.90391 -12.87399 -12.67289 -12.51611 -12.07955 -11.96815 -11.86476 -11.74178 -11.50739 -11.42537 -10.92764 -10.69624 -10.10689 -9.89917 -9.71965 -8.88123 -7.90721 -5.28517 -0.04525 0.00961 1.41873 1.45683 1.51183 1.57924 2.07034 2.42388 2.49948 2.91260 3.23847 3.28753 3.42202 3.55379 3.71335 3.85709 3.88977 3.96174 3.97727 4.06319 4.21683 4.24236 4.24823 4.43030 4.51945 4.66790 4.70497 4.73782 4.84260 4.88756 4.94190 4.97487 5.02685 5.06594 5.12503 5.17816 5.20160 5.20671 5.34314 5.44431 5.55141 5.64278 5.75932 5.79131 6.20905 6.53570 7.06761 7.22864 7.73954 8.39808 9.20021 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.002957 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.369691 B = 9468.074709 C =10547.044857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 H 0.132 0.868 4 C 0.510 3.490 5 O -0.581 6.581 6 N -0.704 5.704 7 C 0.132 3.868 8 C 0.149 3.851 9 H 0.054 0.946 10 C -0.113 4.113 11 C -0.133 4.133 12 C 0.173 3.827 13 N -0.611 5.611 14 C -0.242 4.242 15 H 0.075 0.925 16 C -0.059 4.059 17 N -0.945 5.945 18 Si 0.972 3.028 19 H -0.272 1.272 20 H -0.292 1.292 21 H -0.284 1.284 22 C -0.159 4.159 23 C 0.128 3.872 24 F -0.142 7.142 25 C -0.172 4.172 26 C -0.051 4.051 27 C -0.161 4.161 28 C 0.119 3.881 29 F -0.134 7.134 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.416 0.584 34 H 0.030 0.970 35 H 0.033 0.967 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.072 0.928 40 H -0.011 1.011 41 H 0.037 0.963 42 H 0.248 0.752 43 H 0.157 0.843 44 H 0.183 0.817 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.098 9.752 25.162 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 H 0.149 0.851 4 C 0.296 3.704 5 O -0.461 6.461 6 N -0.356 5.356 7 C 0.005 3.995 8 C 0.041 3.959 9 H 0.071 0.929 10 C -0.150 4.150 11 C -0.171 4.171 12 C 0.048 3.952 13 N -0.335 5.335 14 C -0.372 4.372 15 H 0.093 0.907 16 C -0.253 4.253 17 N -0.593 5.593 18 Si 0.800 3.200 19 H -0.197 1.197 20 H -0.218 1.218 21 H -0.210 1.210 22 C -0.161 4.161 23 C 0.109 3.891 24 F -0.120 7.120 25 C -0.191 4.191 26 C -0.068 4.068 27 C -0.180 4.180 28 C 0.099 3.901 29 F -0.112 7.112 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.253 0.747 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.008 0.992 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.175 0.825 44 H 0.200 0.800 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.577 8.926 24.986 26.924 hybrid contribution -0.133 -1.080 -1.232 1.644 sum -4.711 7.845 23.754 25.456 Atomic orbital electron populations 1.21880 0.89628 1.03370 1.05099 1.20199 0.99657 1.00775 0.87906 0.85066 1.21014 0.79650 0.84205 0.85495 1.90699 1.39812 1.28234 1.87314 1.45768 1.53166 1.32163 1.04537 1.21656 0.97311 0.95793 0.84690 1.21344 0.97840 0.91917 0.84768 0.92858 1.22648 1.00281 0.95520 0.96577 1.22919 1.01720 0.96272 0.96197 1.21268 0.90221 0.88065 0.95621 1.44748 1.50209 1.17340 1.21234 1.19260 1.07393 0.92817 1.17687 0.90673 1.25690 0.97302 1.01758 1.00531 1.70131 1.21198 1.38618 1.29354 0.85262 0.77635 0.79868 0.77260 1.19744 1.21781 1.21025 1.19520 1.03739 0.94557 0.98307 1.17551 0.93111 0.89796 0.88649 1.91473 1.71895 1.80767 1.67910 1.21562 1.01225 1.02489 0.93828 1.21302 0.93646 0.92845 0.99032 1.21553 1.02950 0.96369 0.97110 1.17364 0.97582 0.79177 0.95941 1.91494 1.90798 1.34036 1.94871 0.92911 0.89059 0.89272 0.74698 0.95196 0.94861 0.87506 0.91943 0.89908 0.90918 0.99250 0.94501 0.94267 0.82548 0.79972 0.81102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.88 71.98 0.64 -1.90 16 2 C -0.06 -1.48 2.79 -12.28 -0.03 -1.51 16 3 H 0.13 2.45 7.13 -2.39 -0.02 2.43 16 4 C 0.51 16.51 6.60 87.66 0.58 17.09 16 5 O -0.58 -24.77 14.57 -3.04 -0.04 -24.81 16 6 N -0.70 -21.08 5.24 -463.06 -2.42 -23.51 16 7 C 0.13 5.33 5.09 86.38 0.44 5.77 16 8 C 0.15 5.79 3.20 45.34 0.15 5.93 16 9 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 10 C -0.11 -3.46 6.18 31.89 0.20 -3.26 16 11 C -0.13 -4.62 7.11 32.09 0.23 -4.39 16 12 C 0.17 8.56 5.41 86.86 0.47 9.03 16 13 N -0.61 -31.24 3.13 -668.25 -2.09 -33.33 16 14 C -0.24 -13.80 9.73 84.03 0.82 -12.98 16 15 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 16 C -0.06 -3.44 5.47 84.86 0.46 -2.97 16 17 N -0.95 -57.94 10.57 21.65 0.23 -57.71 16 18 Si 0.97 47.20 29.55 68.60 2.03 49.23 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 21 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 22 C -0.16 -3.87 4.40 -19.78 -0.09 -3.95 16 23 C 0.13 3.30 6.14 22.37 0.14 3.44 16 24 F -0.14 -4.42 13.81 44.97 0.62 -3.80 16 25 C -0.17 -3.19 10.03 22.32 0.22 -2.97 16 26 C -0.05 -0.64 10.04 22.26 0.22 -0.42 16 27 C -0.16 -2.32 10.03 22.32 0.22 -2.10 16 28 C 0.12 2.43 7.25 22.37 0.16 2.59 16 29 F -0.13 -2.72 16.19 44.97 0.73 -1.99 16 30 H 0.05 1.16 6.29 -2.39 -0.02 1.15 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.24 7.56 -2.39 -0.02 1.22 16 33 H 0.42 8.90 7.80 -92.70 -0.72 8.18 16 34 H 0.03 1.41 7.88 -2.39 -0.02 1.39 16 35 H 0.03 1.54 8.04 -2.39 -0.02 1.52 16 36 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.06 1.96 7.79 -2.39 -0.02 1.94 16 38 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H -0.01 -0.59 8.06 -2.39 -0.02 -0.60 16 41 H 0.04 2.05 6.93 -2.39 -0.02 2.03 16 42 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 44 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 45 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -78.81 371.23 4.17 -74.65 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.29 Total: 13.89 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 4.83 Total: 7.39 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -4.29 Total: -114.55 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.04 Total: -24.81 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 1.35 Total: -5.79 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -78.81 4.17 -74.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481048539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.855 kcal (2) G-P(sol) polarization free energy of solvation -78.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds