Wall clock time and date at job start Tue Mar 31 2020 21:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47495 * 2 1 4 4 C 1.50695 * 109.47198 * 239.99594 * 2 1 3 5 5 O 1.21287 * 120.00288 * 240.00499 * 4 2 1 6 6 N 1.34779 * 119.99999 * 59.99762 * 4 2 1 7 7 C 1.46497 * 120.00288 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47301 * 174.96843 * 7 6 4 9 9 H 1.08993 * 109.87122 * 55.57014 * 8 7 6 10 10 C 1.54323 * 109.87953 * 294.54974 * 8 7 6 11 11 C 1.55153 * 102.94358 * 218.39049 * 10 8 7 12 12 C 1.54913 * 101.58222 * 35.50335 * 11 10 8 13 13 N 1.47024 * 109.88139 * 176.74702 * 8 7 6 14 14 C 1.36940 * 125.64594 * 298.33472 * 13 8 7 15 15 H 1.07998 * 119.99792 * 345.85065 * 14 13 8 16 16 C 1.38805 * 119.99851 * 165.85355 * 14 13 8 17 17 N 1.31617 * 120.00318 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99887 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47228 * 59.99912 * 18 16 14 20 20 H 1.48500 * 109.47157 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47021 * 299.99830 * 18 16 14 22 22 C 1.50700 * 109.46987 * 119.99828 * 2 1 3 23 23 C 1.38414 * 120.02777 * 59.72491 * 22 2 1 24 24 F 1.35102 * 120.01474 * 359.97438 * 23 22 2 25 25 C 1.38479 * 119.97681 * 179.70262 * 23 22 2 26 26 C 1.38210 * 120.02253 * 0.59198 * 25 23 22 27 27 C 1.38209 * 120.04828 * 359.68039 * 26 25 23 28 28 C 1.38421 * 120.02373 * 239.99824 * 22 2 1 29 29 F 1.35095 * 120.01222 * 359.97438 * 28 22 2 30 30 H 1.08994 * 109.47235 * 59.99970 * 1 2 3 31 31 H 1.09004 * 109.47209 * 300.00222 * 1 2 3 32 32 H 1.08997 * 109.47290 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99586 * 0.02562 * 6 4 2 34 34 H 1.09004 * 109.47372 * 294.96804 * 7 6 4 35 35 H 1.09005 * 109.47138 * 54.96508 * 7 6 4 36 36 H 1.08995 * 110.72414 * 336.75543 * 10 8 7 37 37 H 1.09004 * 110.71927 * 100.03025 * 10 8 7 38 38 H 1.09000 * 111.00767 * 153.57975 * 11 10 8 39 39 H 1.09007 * 111.00336 * 277.43206 * 11 10 8 40 40 H 1.08993 * 110.36416 * 81.83119 * 12 11 10 41 41 H 1.08999 * 110.36579 * 204.04536 * 12 11 10 42 42 H 0.96996 * 119.99922 * 179.97438 * 17 16 14 43 43 H 1.08001 * 119.99027 * 180.27764 * 25 23 22 44 44 H 1.07999 * 119.97262 * 179.70297 * 26 25 23 45 45 H 1.08003 * 119.98312 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.1955 -0.9404 -3.6507 8 6 1.5847 -0.2961 -4.8968 9 1 1.8024 0.7718 -4.9062 10 6 0.0580 -0.5209 -4.9089 11 6 -0.2433 -0.7798 -6.4087 12 6 1.0214 -1.5579 -6.8502 13 7 2.1290 -0.9313 -6.1059 14 6 3.4465 -0.9391 -6.4791 15 1 4.1468 -0.2695 -6.0020 16 6 3.8818 -1.8075 -7.4705 17 7 3.0285 -2.6239 -8.0516 18 14 5.6790 -1.8176 -7.9802 19 1 6.5241 -2.1590 -6.8078 20 1 5.8847 -2.8279 -9.0490 21 1 6.0569 -0.4745 -8.4885 22 6 2.0323 -0.7104 1.2305 23 6 1.6936 -2.0338 1.4530 24 9 0.9119 -2.6895 0.5674 25 6 2.1608 -2.6874 2.5809 26 6 2.9550 -2.0151 3.4905 27 6 3.2892 -0.6919 3.2722 28 6 2.8282 -0.0381 2.1419 29 9 3.1555 1.2551 1.9286 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.1493 0.5388 -2.5435 34 1 3.2818 -0.8625 -3.6968 35 1 1.9081 -1.9910 -3.6068 36 1 -0.2089 -1.3891 -4.3065 37 1 -0.4656 0.3687 -4.5584 38 1 -1.1387 -1.3898 -6.5278 39 1 -0.3358 0.1583 -6.9563 40 1 0.9319 -2.6106 -6.5821 41 1 1.1762 -1.4524 -7.9239 42 1 3.3327 -3.2305 -8.7447 43 1 1.9003 -3.7214 2.7525 44 1 3.3150 -2.5242 4.3724 45 1 3.9096 -0.1674 3.9839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481048540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:02 Heat of formation + Delta-G solvation = -80.850538 kcal Electronic energy + Delta-G solvation = -29746.134437 eV Core-core repulsion = 25400.057104 eV Total energy + Delta-G solvation = -4346.077333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.24985 -49.04375 -39.98620 -38.73431 -37.59612 -34.44705 -34.22782 -32.47047 -30.50635 -30.10911 -29.47973 -28.47059 -25.30245 -24.70578 -23.84170 -23.07488 -22.18092 -20.35297 -19.96675 -19.41264 -18.32084 -17.82891 -17.01941 -16.57711 -16.27370 -15.90301 -15.72137 -15.64823 -15.39361 -14.98795 -14.84571 -14.58781 -14.33681 -13.99241 -13.84090 -13.44593 -13.16430 -12.95505 -12.71781 -12.43228 -12.32595 -12.12628 -12.08221 -11.88563 -11.81406 -11.59103 -11.28986 -11.13229 -10.94117 -10.76977 -10.23923 -10.12427 -9.94693 -9.83839 -9.72199 -9.57683 -9.08444 -8.92943 -8.65597 -8.56283 -6.84117 -5.76190 -3.12893 0.72373 0.78890 2.85380 3.06635 3.40461 3.45828 3.46213 3.50541 3.70438 4.09110 4.21011 4.40437 4.49640 4.53278 4.84496 4.89146 4.93490 5.05336 5.32770 5.39437 5.40759 5.48839 5.52048 5.54902 5.62876 5.67067 5.73545 5.78983 5.81410 5.90228 5.94865 6.06861 6.14028 6.24865 6.46060 6.53345 6.55836 6.63031 6.71512 6.82369 7.06724 7.51905 7.60870 7.78112 7.79316 8.25867 8.48010 9.17783 9.78338 10.45497 11.35627 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.002897 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.921046 B = 9663.701410 C =10362.883833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 H 0.111 0.889 4 C 0.514 3.486 5 O -0.533 6.533 6 N -0.719 5.719 7 C 0.110 3.890 8 C 0.152 3.848 9 H 0.037 0.963 10 C -0.126 4.126 11 C -0.149 4.149 12 C 0.172 3.828 13 N -0.588 5.588 14 C -0.235 4.235 15 H 0.075 0.925 16 C -0.001 4.001 17 N -0.916 5.916 18 Si 0.911 3.089 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.284 1.284 22 C -0.137 4.137 23 C 0.164 3.836 24 F -0.120 7.120 25 C -0.168 4.168 26 C -0.063 4.063 27 C -0.169 4.169 28 C 0.134 3.866 29 F -0.131 7.131 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.395 0.605 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.254 0.746 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 5.710 22.476 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 H 0.129 0.871 4 C 0.298 3.702 5 O -0.409 6.409 6 N -0.370 5.370 7 C -0.015 4.015 8 C 0.044 3.956 9 H 0.054 0.946 10 C -0.164 4.164 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.313 5.313 14 C -0.363 4.363 15 H 0.093 0.907 16 C -0.198 4.198 17 N -0.562 5.562 18 Si 0.741 3.259 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.211 1.211 22 C -0.140 4.140 23 C 0.145 3.855 24 F -0.098 7.098 25 C -0.187 4.187 26 C -0.081 4.081 27 C -0.188 4.188 28 C 0.114 3.886 29 F -0.109 7.109 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.228 0.772 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.533 4.875 22.267 23.712 hybrid contribution 0.768 0.380 -0.509 0.996 sum -5.765 5.255 21.758 23.114 Atomic orbital electron populations 1.21858 0.91442 1.03943 1.03120 1.20197 0.98278 1.00700 0.90331 0.87077 1.20189 0.80766 0.84825 0.84423 1.90726 1.37600 1.25993 1.86571 1.46056 1.53229 1.31827 1.05895 1.22249 0.99710 0.96903 0.82634 1.21123 0.91767 0.95807 0.86931 0.94553 1.22603 0.95653 1.00418 0.97702 1.23008 0.99803 1.00636 0.95281 1.21457 0.82725 0.93478 0.97594 1.44472 1.04061 1.63814 1.18924 1.18939 0.83455 1.16108 1.17822 0.90719 1.24902 0.97910 0.97189 0.99799 1.69924 1.32820 1.25225 1.28205 0.86226 0.84508 0.77239 0.77959 1.20966 1.21530 1.21054 1.19381 1.02615 0.94284 0.97671 1.17097 0.91736 0.89065 0.87651 1.91532 1.71016 1.80311 1.66939 1.21216 1.01451 1.01607 0.94457 1.20820 0.95415 0.93182 0.98659 1.21121 1.03869 0.96066 0.97771 1.17148 0.97193 0.79089 0.95143 1.91505 1.90742 1.33908 1.94741 0.90998 0.91334 0.91036 0.77151 0.91582 0.91586 0.91807 0.92431 0.92348 0.92312 0.95669 0.90875 0.93543 0.84015 0.83999 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.88 37.16 0.33 -1.07 16 2 C -0.07 -0.89 2.79 -92.92 -0.26 -1.15 16 3 H 0.11 1.18 7.13 -51.93 -0.37 0.81 16 4 C 0.51 8.29 6.60 -10.99 -0.07 8.22 16 5 O -0.53 -10.91 14.58 5.55 0.08 -10.83 16 6 N -0.72 -11.01 5.23 -60.29 -0.32 -11.33 16 7 C 0.11 2.17 5.08 -4.04 -0.02 2.14 16 8 C 0.15 3.02 3.21 -66.95 -0.21 2.80 16 9 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 10 C -0.13 -2.10 6.14 -24.90 -0.15 -2.25 16 11 C -0.15 -2.73 7.08 -24.58 -0.17 -2.90 16 12 C 0.17 4.13 5.42 -2.53 -0.01 4.12 16 13 N -0.59 -14.71 3.13 -162.58 -0.51 -15.22 16 14 C -0.23 -6.49 9.75 -15.06 -0.15 -6.64 16 15 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 16 C 0.00 -0.02 5.47 -17.43 -0.10 -0.12 16 17 N -0.92 -26.83 10.56 55.49 0.59 -26.25 16 18 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C -0.14 -1.72 4.40 -104.49 -0.46 -2.18 16 23 C 0.16 2.09 6.14 -39.43 -0.24 1.85 16 24 F -0.12 -1.75 13.82 2.25 0.03 -1.72 16 25 C -0.17 -1.66 10.03 -39.50 -0.40 -2.06 16 26 C -0.06 -0.49 10.04 -39.60 -0.40 -0.89 16 27 C -0.17 -1.49 10.02 -39.51 -0.40 -1.88 16 28 C 0.13 1.50 7.25 -39.43 -0.29 1.21 16 29 F -0.13 -1.48 16.19 2.25 0.04 -1.45 16 30 H 0.07 0.58 7.56 -51.93 -0.39 0.18 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.77 6.29 -51.93 -0.33 0.45 16 33 H 0.40 4.74 7.78 -40.82 -0.32 4.42 16 34 H 0.07 1.48 7.90 -51.93 -0.41 1.07 16 35 H 0.07 1.47 8.06 -51.93 -0.42 1.05 16 36 H 0.06 1.07 7.80 -51.93 -0.40 0.66 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 41 H 0.07 1.95 6.90 -51.93 -0.36 1.59 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -33.22 371.17 -8.86 -42.08 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.35 Total: 2.62 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -3.00 Total: -0.78 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.24 Total: -52.79 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.07 Total: -3.17 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.22 -8.86 -42.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481048540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.769 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds