Wall clock time and date at job start Tue Mar 31 2020 21:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47495 * 2 1 4 4 C 1.50695 * 109.47198 * 239.99594 * 2 1 3 5 5 O 1.21287 * 120.00288 * 240.00499 * 4 2 1 6 6 N 1.34779 * 119.99999 * 59.99762 * 4 2 1 7 7 C 1.46497 * 120.00288 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47301 * 174.96843 * 7 6 4 9 9 H 1.08993 * 109.87122 * 55.57014 * 8 7 6 10 10 C 1.54323 * 109.87953 * 294.54974 * 8 7 6 11 11 C 1.55153 * 102.94358 * 218.39049 * 10 8 7 12 12 C 1.54913 * 101.58222 * 35.50335 * 11 10 8 13 13 N 1.47024 * 109.88139 * 176.74702 * 8 7 6 14 14 C 1.36940 * 125.64594 * 298.33472 * 13 8 7 15 15 H 1.07998 * 119.99792 * 345.85065 * 14 13 8 16 16 C 1.38805 * 119.99851 * 165.85355 * 14 13 8 17 17 N 1.31617 * 120.00318 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99887 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47228 * 59.99912 * 18 16 14 20 20 H 1.48500 * 109.47157 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47021 * 299.99830 * 18 16 14 22 22 C 1.50700 * 109.46987 * 119.99828 * 2 1 3 23 23 C 1.38414 * 120.02777 * 59.72491 * 22 2 1 24 24 F 1.35102 * 120.01474 * 359.97438 * 23 22 2 25 25 C 1.38479 * 119.97681 * 179.70262 * 23 22 2 26 26 C 1.38210 * 120.02253 * 0.59198 * 25 23 22 27 27 C 1.38209 * 120.04828 * 359.68039 * 26 25 23 28 28 C 1.38421 * 120.02373 * 239.99824 * 22 2 1 29 29 F 1.35095 * 120.01222 * 359.97438 * 28 22 2 30 30 H 1.08994 * 109.47235 * 59.99970 * 1 2 3 31 31 H 1.09004 * 109.47209 * 300.00222 * 1 2 3 32 32 H 1.08997 * 109.47290 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99586 * 0.02562 * 6 4 2 34 34 H 1.09004 * 109.47372 * 294.96804 * 7 6 4 35 35 H 1.09005 * 109.47138 * 54.96508 * 7 6 4 36 36 H 1.08995 * 110.72414 * 336.75543 * 10 8 7 37 37 H 1.09004 * 110.71927 * 100.03025 * 10 8 7 38 38 H 1.09000 * 111.00767 * 153.57975 * 11 10 8 39 39 H 1.09007 * 111.00336 * 277.43206 * 11 10 8 40 40 H 1.08993 * 110.36416 * 81.83119 * 12 11 10 41 41 H 1.08999 * 110.36579 * 204.04536 * 12 11 10 42 42 H 0.96996 * 119.99922 * 179.97438 * 17 16 14 43 43 H 1.08001 * 119.99027 * 180.27764 * 25 23 22 44 44 H 1.07999 * 119.97262 * 179.70297 * 26 25 23 45 45 H 1.08003 * 119.98312 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.1955 -0.9404 -3.6507 8 6 1.5847 -0.2961 -4.8968 9 1 1.8024 0.7718 -4.9062 10 6 0.0580 -0.5209 -4.9089 11 6 -0.2433 -0.7798 -6.4087 12 6 1.0214 -1.5579 -6.8502 13 7 2.1290 -0.9313 -6.1059 14 6 3.4465 -0.9391 -6.4791 15 1 4.1468 -0.2695 -6.0020 16 6 3.8818 -1.8075 -7.4705 17 7 3.0285 -2.6239 -8.0516 18 14 5.6790 -1.8176 -7.9802 19 1 6.5241 -2.1590 -6.8078 20 1 5.8847 -2.8279 -9.0490 21 1 6.0569 -0.4745 -8.4885 22 6 2.0323 -0.7104 1.2305 23 6 1.6936 -2.0338 1.4530 24 9 0.9119 -2.6895 0.5674 25 6 2.1608 -2.6874 2.5809 26 6 2.9550 -2.0151 3.4905 27 6 3.2892 -0.6919 3.2722 28 6 2.8282 -0.0381 2.1419 29 9 3.1555 1.2551 1.9286 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.1493 0.5388 -2.5435 34 1 3.2818 -0.8625 -3.6968 35 1 1.9081 -1.9910 -3.6068 36 1 -0.2089 -1.3891 -4.3065 37 1 -0.4656 0.3687 -4.5584 38 1 -1.1387 -1.3898 -6.5278 39 1 -0.3358 0.1583 -6.9563 40 1 0.9319 -2.6106 -6.5821 41 1 1.1762 -1.4524 -7.9239 42 1 3.3327 -3.2305 -8.7447 43 1 1.9003 -3.7214 2.7525 44 1 3.3150 -2.5242 4.3724 45 1 3.9096 -0.1674 3.9839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481048540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:00 Heat of formation + Delta-G solvation = -101.444611 kcal Electronic energy + Delta-G solvation = -29747.027463 eV Core-core repulsion = 25400.057104 eV Total energy + Delta-G solvation = -4346.970359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.06971 -50.00682 -41.19468 -39.74574 -39.15839 -35.81249 -35.36591 -34.40406 -31.51791 -31.25583 -30.90398 -29.92202 -26.82483 -26.16886 -25.25226 -23.87280 -23.21600 -22.03337 -21.37501 -20.94520 -19.17941 -18.98821 -18.54782 -17.81367 -17.47952 -16.95255 -16.87943 -16.57937 -16.50624 -16.38063 -16.20630 -15.89395 -15.65678 -15.42614 -15.00801 -14.73995 -14.56216 -14.02902 -13.77757 -13.67521 -13.65116 -13.36721 -13.26605 -13.08937 -12.99256 -12.90271 -12.87758 -12.67638 -12.49543 -12.07903 -11.96402 -11.86533 -11.73908 -11.50086 -11.41770 -10.92924 -10.69809 -10.10903 -9.89739 -9.71932 -8.88541 -7.90440 -5.28225 -0.04599 0.01020 1.41924 1.45644 1.51216 1.57986 2.06967 2.42370 2.49944 2.91316 3.24035 3.28821 3.42101 3.54981 3.72318 3.85563 3.89044 3.96865 3.98217 4.06784 4.22027 4.24281 4.24999 4.43360 4.52292 4.67730 4.71135 4.74859 4.84824 4.88766 4.94760 4.98056 5.02918 5.06881 5.12735 5.18743 5.20585 5.20781 5.34584 5.44565 5.55151 5.64779 5.76262 5.79115 6.20903 6.53546 7.06830 7.22819 7.74055 8.39790 9.20163 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.002897 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.921046 B = 9663.701410 C =10362.883833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 H 0.128 0.872 4 C 0.510 3.490 5 O -0.581 6.581 6 N -0.704 5.704 7 C 0.132 3.868 8 C 0.149 3.851 9 H 0.053 0.947 10 C -0.112 4.112 11 C -0.133 4.133 12 C 0.173 3.827 13 N -0.611 5.611 14 C -0.243 4.243 15 H 0.076 0.924 16 C -0.059 4.059 17 N -0.945 5.945 18 Si 0.972 3.028 19 H -0.284 1.284 20 H -0.292 1.292 21 H -0.272 1.272 22 C -0.159 4.159 23 C 0.130 3.870 24 F -0.141 7.141 25 C -0.172 4.172 26 C -0.051 4.051 27 C -0.162 4.162 28 C 0.117 3.883 29 F -0.135 7.135 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.416 0.584 34 H 0.030 0.970 35 H 0.032 0.968 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.072 0.928 40 H -0.011 1.011 41 H 0.037 0.963 42 H 0.248 0.752 43 H 0.158 0.842 44 H 0.183 0.817 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.900 7.750 25.151 27.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 H 0.146 0.854 4 C 0.296 3.704 5 O -0.461 6.461 6 N -0.356 5.356 7 C 0.005 3.995 8 C 0.041 3.959 9 H 0.071 0.929 10 C -0.150 4.150 11 C -0.171 4.171 12 C 0.048 3.952 13 N -0.335 5.335 14 C -0.372 4.372 15 H 0.093 0.907 16 C -0.253 4.253 17 N -0.593 5.593 18 Si 0.800 3.200 19 H -0.210 1.210 20 H -0.218 1.218 21 H -0.198 1.198 22 C -0.161 4.161 23 C 0.110 3.890 24 F -0.119 7.119 25 C -0.190 4.190 26 C -0.068 4.068 27 C -0.180 4.180 28 C 0.098 3.902 29 F -0.113 7.113 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.253 0.747 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.007 0.993 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.176 0.824 44 H 0.200 0.800 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.303 6.977 24.975 26.940 hybrid contribution 1.031 -0.259 -1.220 1.618 sum -6.273 6.718 23.755 25.471 Atomic orbital electron populations 1.21881 0.89351 1.03517 1.05152 1.20203 0.99899 1.00615 0.87904 0.85378 1.21012 0.79632 0.84218 0.85490 1.90700 1.39746 1.28302 1.87315 1.45767 1.53225 1.32105 1.04531 1.21661 0.97514 0.95585 0.84710 1.21340 0.93996 0.95776 0.84760 0.92907 1.22595 0.93105 1.02693 0.96579 1.22873 0.97439 1.00571 0.96244 1.21273 0.85588 0.92658 0.95658 1.44744 1.03619 1.63894 1.21276 1.19265 0.85004 1.15665 1.17253 0.90655 1.25685 1.01706 0.97469 1.00446 1.70133 1.34276 1.26102 1.28808 0.85256 0.79980 0.77500 0.77243 1.21027 1.21780 1.19761 1.19523 1.03719 0.94616 0.98269 1.17525 0.93074 0.89716 0.88657 1.91472 1.71807 1.80734 1.67894 1.21568 1.01162 1.02503 0.93815 1.21303 0.93679 0.92802 0.99060 1.21549 1.02967 0.96412 0.97109 1.17387 0.97662 0.79163 0.96023 1.91490 1.90813 1.34137 1.94878 0.89066 0.89181 0.92667 0.74696 0.95170 0.94906 0.91910 0.87452 0.89931 0.90939 0.99296 0.94410 0.94269 0.82447 0.79973 0.81187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.88 71.98 0.64 -1.79 16 2 C -0.07 -1.50 2.79 -12.29 -0.03 -1.53 16 3 H 0.13 2.47 7.13 -2.39 -0.02 2.45 16 4 C 0.51 16.50 6.60 87.66 0.58 17.08 16 5 O -0.58 -24.74 14.58 -3.05 -0.04 -24.79 16 6 N -0.70 -21.05 5.23 -463.05 -2.42 -23.47 16 7 C 0.13 5.31 5.08 86.38 0.44 5.75 16 8 C 0.15 5.78 3.21 45.34 0.15 5.93 16 9 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 10 C -0.11 -3.43 6.14 31.78 0.20 -3.23 16 11 C -0.13 -4.62 7.08 31.99 0.23 -4.40 16 12 C 0.17 8.56 5.42 86.86 0.47 9.03 16 13 N -0.61 -31.24 3.13 -668.28 -2.09 -33.33 16 14 C -0.24 -13.81 9.75 84.03 0.82 -12.99 16 15 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 16 C -0.06 -3.45 5.47 84.86 0.46 -2.99 16 17 N -0.95 -57.93 10.56 21.65 0.23 -57.71 16 18 Si 0.97 47.16 29.55 68.60 2.03 49.18 16 19 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 C -0.16 -3.87 4.40 -19.78 -0.09 -3.96 16 23 C 0.13 3.30 6.14 22.37 0.14 3.43 16 24 F -0.14 -4.26 13.82 44.97 0.62 -3.64 16 25 C -0.17 -3.14 10.03 22.32 0.22 -2.92 16 26 C -0.05 -0.64 10.04 22.26 0.22 -0.42 16 27 C -0.16 -2.37 10.02 22.32 0.22 -2.15 16 28 C 0.12 2.43 7.25 22.37 0.16 2.59 16 29 F -0.13 -2.83 16.19 44.97 0.73 -2.11 16 30 H 0.09 1.17 7.56 -2.39 -0.02 1.15 16 31 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.05 1.15 6.29 -2.39 -0.02 1.14 16 33 H 0.42 8.88 7.78 -92.71 -0.72 8.16 16 34 H 0.03 1.42 7.90 -2.38 -0.02 1.40 16 35 H 0.03 1.53 8.06 -2.38 -0.02 1.51 16 36 H 0.06 1.97 7.80 -2.39 -0.02 1.95 16 37 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 40 H -0.01 -0.61 8.07 -2.39 -0.02 -0.63 16 41 H 0.04 2.10 6.90 -2.39 -0.02 2.08 16 42 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 43 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 44 H 0.18 0.81 8.06 -2.91 -0.02 0.78 16 45 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -78.80 371.17 4.17 -74.63 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.30 Total: 13.79 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 4.83 Total: 7.45 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -4.28 Total: -114.51 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.04 Total: -24.79 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 1.35 Total: -5.75 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -78.80 4.17 -74.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481048540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.819 kcal (2) G-P(sol) polarization free energy of solvation -78.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds