Wall clock time and date at job start Tue Mar 31 2020 21:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46852 * 2 1 4 4 C 1.50696 * 109.47532 * 119.99943 * 2 1 3 5 5 O 1.21277 * 120.00031 * 97.98494 * 4 2 1 6 6 N 1.34775 * 120.00009 * 277.99019 * 4 2 1 7 7 C 1.47421 * 125.64919 * 6.09231 * 6 4 2 8 8 C 1.54916 * 104.83231 * 155.91143 * 7 6 4 9 9 C 1.55398 * 101.66708 * 36.92000 * 8 7 6 10 10 C 1.47029 * 125.64591 * 186.13577 * 6 4 2 11 11 H 1.09006 * 109.88147 * 300.58812 * 10 6 4 12 12 C 1.52997 * 109.88431 * 61.60640 * 10 6 4 13 13 N 1.46503 * 109.46691 * 284.78845 * 12 10 6 14 14 C 1.36940 * 119.99874 * 171.81593 * 13 12 10 15 15 H 1.08002 * 119.99868 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00138 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99909 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47202 * 270.00156 * 18 16 14 20 20 H 1.48493 * 109.47338 * 30.00323 * 18 16 14 21 21 H 1.48504 * 109.46756 * 150.00340 * 18 16 14 22 22 C 1.50695 * 109.47092 * 240.00337 * 2 1 3 23 23 C 1.38415 * 120.02634 * 299.72111 * 22 2 1 24 24 F 1.35103 * 120.00993 * 359.97438 * 23 22 2 25 25 C 1.38478 * 119.97812 * 179.70094 * 23 22 2 26 26 C 1.38207 * 120.02078 * 0.59751 * 25 23 22 27 27 C 1.38212 * 120.04992 * 359.68232 * 26 25 23 28 28 C 1.38427 * 120.02629 * 119.99686 * 22 2 1 29 29 F 1.35098 * 120.00996 * 359.97438 * 28 22 2 30 30 H 1.09008 * 109.47448 * 302.09772 * 1 2 3 31 31 H 1.09002 * 109.47642 * 62.10351 * 1 2 3 32 32 H 1.09006 * 109.47070 * 182.10012 * 1 2 3 33 33 H 1.09000 * 110.36632 * 274.74551 * 7 6 4 34 34 H 1.08995 * 110.37069 * 37.07280 * 7 6 4 35 35 H 1.08997 * 111.00650 * 155.08571 * 8 7 6 36 36 H 1.09008 * 111.00049 * 278.89452 * 8 7 6 37 37 H 1.08998 * 110.85729 * 206.30137 * 9 8 7 38 38 H 1.09001 * 110.68989 * 82.95408 * 9 8 7 39 39 H 1.08991 * 109.47043 * 164.79022 * 12 10 6 40 40 H 1.08995 * 109.47131 * 44.78149 * 12 10 6 41 41 H 0.97001 * 120.00352 * 351.81178 * 13 12 10 42 42 H 0.96996 * 120.00289 * 179.97438 * 17 16 14 43 43 H 1.08000 * 119.98726 * 180.32126 * 25 23 22 44 44 H 1.07996 * 119.97797 * 179.70022 * 26 25 23 45 45 H 1.08001 * 119.98384 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3721 -1.8726 1.1633 6 7 2.1041 -0.0541 2.4054 7 6 1.6091 1.3113 2.6585 8 6 1.3502 1.3627 4.1850 9 6 2.5242 0.5038 4.7319 10 6 2.6897 -0.5810 3.6468 11 1 2.1665 -1.4888 3.9474 12 6 4.1747 -0.8824 3.4346 13 7 4.3161 -2.1115 2.6502 14 6 5.5486 -2.4925 2.1907 15 1 6.4163 -1.8865 2.4063 16 6 5.6828 -3.6574 1.4479 17 7 4.6254 -4.3956 1.1847 18 14 7.3639 -4.1766 0.8205 19 1 7.5943 -3.5880 -0.5233 20 1 8.4116 -3.6969 1.7571 21 1 7.4222 -5.6576 0.7289 22 6 2.0323 -0.7103 -1.2305 23 6 1.7030 -2.0371 -1.4472 24 9 0.9314 -2.6963 -0.5553 25 6 2.1600 -2.6871 -2.5814 26 6 2.9548 -2.0150 -3.4905 27 6 3.2891 -0.6918 -3.2722 28 6 2.8281 -0.0380 -2.1420 29 9 3.1544 1.2555 -1.9292 30 1 -0.3634 0.5461 0.8706 31 1 -0.3634 0.4808 -0.9082 32 1 -0.3633 -1.0270 0.0377 33 1 2.3630 2.0464 2.3767 34 1 0.6833 1.4869 2.1106 35 1 1.4074 2.3857 4.5568 36 1 0.3894 0.9120 4.4337 37 1 2.2628 0.0543 5.6898 38 1 3.4308 1.1025 4.8202 39 1 4.6611 -1.0104 4.4015 40 1 4.6406 -0.0546 2.9001 41 1 3.5368 -2.6556 2.4563 42 1 4.7190 -5.2094 0.6653 43 1 1.8988 -3.7209 -2.7532 44 1 3.3149 -2.5240 -4.3724 45 1 3.9099 -0.1675 -3.9836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482060040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:52 Heat of formation + Delta-G solvation = -67.196822 kcal Electronic energy + Delta-G solvation = -31619.176186 eV Core-core repulsion = 27273.690923 eV Total energy + Delta-G solvation = -4345.485263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.84605 -48.41130 -39.97043 -38.56457 -36.96252 -34.48645 -33.68704 -31.33208 -31.12889 -30.00513 -29.30609 -28.58696 -25.11572 -24.58996 -23.11284 -22.59360 -22.17015 -21.27677 -20.41013 -18.49837 -17.80497 -17.55668 -16.77587 -16.34168 -16.06806 -15.64211 -15.54875 -15.22307 -14.83728 -14.65275 -14.27055 -14.20206 -13.99634 -13.82203 -13.41921 -13.30778 -12.89265 -12.82065 -12.72027 -12.42849 -12.19748 -12.00556 -11.85264 -11.72432 -11.57957 -11.37312 -11.24798 -11.11123 -11.00146 -10.72838 -10.68598 -10.54177 -10.42587 -9.88171 -9.47290 -8.95112 -8.64732 -8.56126 -8.40032 -8.00285 -6.55314 -5.43258 -2.71005 1.20282 1.31094 3.27240 3.41433 3.55488 3.60003 3.61537 3.67209 4.20939 4.51766 4.59881 4.65871 4.73714 4.79851 4.88036 4.98005 5.01460 5.18640 5.24731 5.33309 5.41652 5.43910 5.48081 5.59208 5.70095 5.78674 5.81818 5.83647 5.92869 5.97028 6.06314 6.09196 6.15091 6.18266 6.22846 6.29406 6.32991 6.39904 6.54930 6.66383 6.89243 7.03340 7.08507 7.91173 8.07467 8.69101 8.93818 9.86106 10.51740 10.92180 11.76692 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007584 B = 0.007326 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.108621 B = 3821.229875 C = 6241.848361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.061 4.061 3 H 0.098 0.902 4 C 0.517 3.483 5 O -0.449 6.449 6 N -0.618 5.618 7 C 0.098 3.902 8 C -0.131 4.131 9 C -0.124 4.124 10 C 0.131 3.869 11 H 0.072 0.928 12 C 0.146 3.854 13 N -0.721 5.721 14 C -0.237 4.237 15 H 0.059 0.941 16 C -0.008 4.008 17 N -0.911 5.911 18 Si 0.892 3.108 19 H -0.294 1.294 20 H -0.285 1.285 21 H -0.293 1.293 22 C -0.146 4.146 23 C 0.185 3.815 24 F -0.112 7.112 25 C -0.166 4.166 26 C -0.061 4.061 27 C -0.175 4.175 28 C 0.133 3.867 29 F -0.135 7.135 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.016 0.984 40 H 0.018 0.982 41 H 0.400 0.600 42 H 0.247 0.753 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.602 13.379 -3.978 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 H 0.117 0.883 4 C 0.302 3.698 5 O -0.317 6.317 6 N -0.356 5.356 7 C -0.026 4.026 8 C -0.169 4.169 9 C -0.162 4.162 10 C 0.028 3.972 11 H 0.090 0.910 12 C 0.016 3.984 13 N -0.372 5.372 14 C -0.369 4.369 15 H 0.077 0.923 16 C -0.205 4.205 17 N -0.559 5.559 18 Si 0.724 3.276 19 H -0.222 1.222 20 H -0.211 1.211 21 H -0.220 1.220 22 C -0.148 4.148 23 C 0.165 3.835 24 F -0.090 7.090 25 C -0.185 4.185 26 C -0.079 4.079 27 C -0.194 4.194 28 C 0.114 3.886 29 F -0.114 7.114 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.033 0.967 40 H 0.035 0.965 41 H 0.241 0.759 42 H 0.058 0.942 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.291 12.628 -4.106 17.430 hybrid contribution 0.990 -0.206 -0.241 1.040 sum -10.301 12.422 -4.346 16.713 Atomic orbital electron populations 1.21825 0.91997 1.03799 1.02387 1.20017 0.97616 1.00056 0.90599 0.88344 1.19834 0.79688 0.87557 0.82695 1.90889 1.43159 1.14681 1.83004 1.48361 1.61502 1.15565 1.10172 1.22290 0.98774 0.85179 0.96317 1.22784 0.99075 1.00508 0.94570 1.22667 0.98677 0.96937 0.97951 1.21836 0.95787 0.96355 0.83200 0.90962 1.21001 0.91223 0.91230 0.94913 1.42787 1.08741 1.23438 1.62190 1.19111 0.86507 1.04425 1.26837 0.92280 1.24647 0.96183 0.98218 1.01421 1.69754 1.26730 1.15691 1.43713 0.86413 0.84840 0.77507 0.78815 1.22166 1.21115 1.21987 1.19318 1.03438 0.94452 0.97590 1.16987 0.91107 0.88600 0.86818 1.91546 1.71143 1.80030 1.66262 1.21186 1.01467 1.01368 0.94507 1.20759 0.95253 0.93105 0.98772 1.21006 1.04228 0.96157 0.98004 1.17104 0.97342 0.78902 0.95279 1.91466 1.90908 1.34162 1.94830 0.91578 0.91605 0.90995 0.91953 0.91065 0.90255 0.90828 0.90252 0.90482 0.96703 0.96458 0.75878 0.94240 0.84248 0.84379 0.84493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.86 37.15 0.33 -1.47 16 2 C -0.06 -0.98 2.11 -92.93 -0.20 -1.18 16 3 H 0.10 1.44 6.71 -51.92 -0.35 1.09 16 4 C 0.52 10.21 6.53 -10.99 -0.07 10.13 16 5 O -0.45 -11.18 10.17 5.56 0.06 -11.12 16 6 N -0.62 -10.48 3.07 -163.01 -0.50 -10.98 16 7 C 0.10 1.16 6.37 -2.53 -0.02 1.15 16 8 C -0.13 -1.30 7.09 -24.45 -0.17 -1.47 16 9 C -0.12 -1.53 6.47 -24.76 -0.16 -1.69 16 10 C 0.13 2.33 3.02 -66.95 -0.20 2.13 16 11 H 0.07 1.42 8.11 -51.93 -0.42 0.99 16 12 C 0.15 3.24 5.62 -4.04 -0.02 3.21 16 13 N -0.72 -20.22 4.38 -59.91 -0.26 -20.48 16 14 C -0.24 -7.25 9.99 -15.06 -0.15 -7.40 16 15 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 17 N -0.91 -29.51 13.06 55.49 0.72 -28.79 16 18 Si 0.89 23.97 29.55 -169.99 -5.02 18.95 16 19 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 21 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 22 C -0.15 -2.55 4.63 -104.49 -0.48 -3.04 16 23 C 0.18 3.41 6.16 -39.43 -0.24 3.17 16 24 F -0.11 -2.26 13.08 2.25 0.03 -2.23 16 25 C -0.17 -2.68 10.03 -39.50 -0.40 -3.08 16 26 C -0.06 -0.84 10.04 -39.60 -0.40 -1.24 16 27 C -0.17 -2.50 10.02 -39.51 -0.40 -2.89 16 28 C 0.13 2.17 7.25 -39.43 -0.29 1.88 16 29 F -0.14 -2.12 16.19 2.25 0.04 -2.09 16 30 H 0.07 0.70 6.29 -51.92 -0.33 0.37 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.02 6.39 -51.93 -0.33 0.68 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.71 5.93 -51.93 -0.31 0.40 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 39 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.40 12.01 5.04 -40.82 -0.21 11.81 16 42 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 44 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -37.04 364.09 -8.53 -45.58 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.12 Total: 7.80 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.96 Total: -2.13 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.04 Total: -60.25 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.06 Total: -11.12 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.07 Total: -4.32 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.02 Total: 18.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.04 -8.53 -45.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482060040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.619 kcal (2) G-P(sol) polarization free energy of solvation -37.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds