Wall clock time and date at job start Tue Mar 31 2020 21:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46852 * 2 1 4 4 C 1.50696 * 109.47532 * 119.99943 * 2 1 3 5 5 O 1.21277 * 120.00031 * 97.98494 * 4 2 1 6 6 N 1.34775 * 120.00009 * 277.99019 * 4 2 1 7 7 C 1.47421 * 125.64919 * 6.09231 * 6 4 2 8 8 C 1.54916 * 104.83231 * 155.91143 * 7 6 4 9 9 C 1.55398 * 101.66708 * 36.92000 * 8 7 6 10 10 C 1.47029 * 125.64591 * 186.13577 * 6 4 2 11 11 H 1.09006 * 109.88147 * 300.58812 * 10 6 4 12 12 C 1.52997 * 109.88431 * 61.60640 * 10 6 4 13 13 N 1.46503 * 109.46691 * 284.78845 * 12 10 6 14 14 C 1.36940 * 119.99874 * 171.81593 * 13 12 10 15 15 H 1.08002 * 119.99868 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00138 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99909 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47202 * 270.00156 * 18 16 14 20 20 H 1.48493 * 109.47338 * 30.00323 * 18 16 14 21 21 H 1.48504 * 109.46756 * 150.00340 * 18 16 14 22 22 C 1.50695 * 109.47092 * 240.00337 * 2 1 3 23 23 C 1.38415 * 120.02634 * 299.72111 * 22 2 1 24 24 F 1.35103 * 120.00993 * 359.97438 * 23 22 2 25 25 C 1.38478 * 119.97812 * 179.70094 * 23 22 2 26 26 C 1.38207 * 120.02078 * 0.59751 * 25 23 22 27 27 C 1.38212 * 120.04992 * 359.68232 * 26 25 23 28 28 C 1.38427 * 120.02629 * 119.99686 * 22 2 1 29 29 F 1.35098 * 120.00996 * 359.97438 * 28 22 2 30 30 H 1.09008 * 109.47448 * 302.09772 * 1 2 3 31 31 H 1.09002 * 109.47642 * 62.10351 * 1 2 3 32 32 H 1.09006 * 109.47070 * 182.10012 * 1 2 3 33 33 H 1.09000 * 110.36632 * 274.74551 * 7 6 4 34 34 H 1.08995 * 110.37069 * 37.07280 * 7 6 4 35 35 H 1.08997 * 111.00650 * 155.08571 * 8 7 6 36 36 H 1.09008 * 111.00049 * 278.89452 * 8 7 6 37 37 H 1.08998 * 110.85729 * 206.30137 * 9 8 7 38 38 H 1.09001 * 110.68989 * 82.95408 * 9 8 7 39 39 H 1.08991 * 109.47043 * 164.79022 * 12 10 6 40 40 H 1.08995 * 109.47131 * 44.78149 * 12 10 6 41 41 H 0.97001 * 120.00352 * 351.81178 * 13 12 10 42 42 H 0.96996 * 120.00289 * 179.97438 * 17 16 14 43 43 H 1.08000 * 119.98726 * 180.32126 * 25 23 22 44 44 H 1.07996 * 119.97797 * 179.70022 * 26 25 23 45 45 H 1.08001 * 119.98384 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3721 -1.8726 1.1633 6 7 2.1041 -0.0541 2.4054 7 6 1.6091 1.3113 2.6585 8 6 1.3502 1.3627 4.1850 9 6 2.5242 0.5038 4.7319 10 6 2.6897 -0.5810 3.6468 11 1 2.1665 -1.4888 3.9474 12 6 4.1747 -0.8824 3.4346 13 7 4.3161 -2.1115 2.6502 14 6 5.5486 -2.4925 2.1907 15 1 6.4163 -1.8865 2.4063 16 6 5.6828 -3.6574 1.4479 17 7 4.6254 -4.3956 1.1847 18 14 7.3639 -4.1766 0.8205 19 1 7.5943 -3.5880 -0.5233 20 1 8.4116 -3.6969 1.7571 21 1 7.4222 -5.6576 0.7289 22 6 2.0323 -0.7103 -1.2305 23 6 1.7030 -2.0371 -1.4472 24 9 0.9314 -2.6963 -0.5553 25 6 2.1600 -2.6871 -2.5814 26 6 2.9548 -2.0150 -3.4905 27 6 3.2891 -0.6918 -3.2722 28 6 2.8281 -0.0380 -2.1420 29 9 3.1544 1.2555 -1.9292 30 1 -0.3634 0.5461 0.8706 31 1 -0.3634 0.4808 -0.9082 32 1 -0.3633 -1.0270 0.0377 33 1 2.3630 2.0464 2.3767 34 1 0.6833 1.4869 2.1106 35 1 1.4074 2.3857 4.5568 36 1 0.3894 0.9120 4.4337 37 1 2.2628 0.0543 5.6898 38 1 3.4308 1.1025 4.8202 39 1 4.6611 -1.0104 4.4015 40 1 4.6406 -0.0546 2.9001 41 1 3.5368 -2.6556 2.4563 42 1 4.7190 -5.2094 0.6653 43 1 1.8988 -3.7209 -2.7532 44 1 3.3149 -2.5240 -4.3724 45 1 3.9099 -0.1675 -3.9836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482060040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:51 Heat of formation + Delta-G solvation = -90.688164 kcal Electronic energy + Delta-G solvation = -31620.194847 eV Core-core repulsion = 27273.690923 eV Total energy + Delta-G solvation = -4346.503924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.06956 -49.81618 -41.31382 -39.77284 -38.30942 -36.31236 -35.19014 -33.24368 -32.42357 -31.21484 -30.57018 -30.12143 -26.69786 -25.98637 -24.61524 -23.88254 -23.75992 -22.48047 -21.65533 -19.90690 -19.22697 -19.05103 -18.49972 -17.58442 -17.42759 -16.97442 -16.80385 -16.59074 -16.51315 -16.17455 -15.84848 -15.45720 -15.28486 -15.20800 -15.01924 -14.79045 -14.54014 -14.01345 -13.90867 -13.70321 -13.46755 -13.30317 -13.16611 -13.08969 -13.02012 -12.86817 -12.83895 -12.63060 -12.43353 -12.26621 -12.01970 -11.93859 -11.87776 -11.60236 -11.48336 -10.90599 -10.47139 -9.83433 -9.65537 -9.42586 -8.79438 -7.78700 -5.07507 -0.01697 0.07602 1.39028 1.42310 1.50272 1.87654 2.11455 2.44245 2.57617 2.99288 3.31791 3.44493 3.48398 3.54030 3.70715 3.72059 3.87306 3.95299 4.04193 4.10523 4.23650 4.25660 4.28171 4.41487 4.43920 4.59808 4.69902 4.74094 4.81185 4.83303 4.86296 4.92235 4.95109 5.00276 5.03086 5.08784 5.16412 5.17828 5.20264 5.22041 5.40971 5.47774 5.64305 5.83775 6.36560 6.73869 7.38909 7.54932 8.33036 8.61074 9.41419 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007584 B = 0.007326 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.108621 B = 3821.229875 C = 6241.848361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.055 4.055 3 H 0.113 0.887 4 C 0.504 3.496 5 O -0.511 6.511 6 N -0.620 5.620 7 C 0.088 3.912 8 C -0.116 4.116 9 C -0.114 4.114 10 C 0.132 3.868 11 H 0.044 0.956 12 C 0.144 3.856 13 N -0.735 5.735 14 C -0.249 4.249 15 H 0.059 0.941 16 C -0.068 4.068 17 N -0.944 5.944 18 Si 0.961 3.039 19 H -0.290 1.290 20 H -0.272 1.272 21 H -0.293 1.293 22 C -0.163 4.163 23 C 0.149 3.851 24 F -0.133 7.133 25 C -0.181 4.181 26 C -0.054 4.054 27 C -0.169 4.169 28 C 0.117 3.883 29 F -0.134 7.134 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.021 0.979 40 H 0.008 0.992 41 H 0.388 0.612 42 H 0.242 0.758 43 H 0.147 0.853 44 H 0.179 0.821 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.422 16.081 -4.349 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.076 4.076 3 H 0.131 0.869 4 C 0.291 3.709 5 O -0.384 6.384 6 N -0.356 5.356 7 C -0.034 4.034 8 C -0.153 4.153 9 C -0.153 4.153 10 C 0.028 3.972 11 H 0.062 0.938 12 C 0.016 3.984 13 N -0.384 5.384 14 C -0.381 4.381 15 H 0.077 0.923 16 C -0.262 4.262 17 N -0.593 5.593 18 Si 0.791 3.209 19 H -0.218 1.218 20 H -0.197 1.197 21 H -0.219 1.219 22 C -0.166 4.166 23 C 0.129 3.871 24 F -0.111 7.111 25 C -0.200 4.200 26 C -0.072 4.072 27 C -0.188 4.188 28 C 0.097 3.903 29 F -0.112 7.112 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.038 0.962 40 H 0.026 0.974 41 H 0.228 0.772 42 H 0.051 0.949 43 H 0.165 0.835 44 H 0.196 0.804 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.119 15.420 -4.436 19.521 hybrid contribution 0.956 -0.997 -0.107 1.385 sum -10.163 14.423 -4.543 18.219 Atomic orbital electron populations 1.21797 0.89597 1.03087 1.04611 1.20055 0.99533 0.99723 0.88327 0.86932 1.20603 0.78822 0.87217 0.84261 1.90857 1.46004 1.17387 1.84126 1.48513 1.60562 1.17386 1.09153 1.22678 0.99944 0.82296 0.98457 1.22807 0.98091 1.02024 0.92410 1.22661 1.00455 0.95584 0.96589 1.21783 0.92198 0.97672 0.85522 0.93802 1.21189 0.94793 0.88665 0.93795 1.43005 1.07505 1.25149 1.62726 1.19482 0.87544 1.04489 1.26625 0.92283 1.25467 1.00020 0.98483 1.02188 1.69971 1.28942 1.15872 1.44560 0.85328 0.80536 0.76824 0.78235 1.21754 1.19742 1.21929 1.19564 1.03993 0.94497 0.98510 1.17426 0.92511 0.89538 0.87601 1.91482 1.71898 1.80520 1.67222 1.21520 1.01908 1.02066 0.94518 1.21231 0.93728 0.93030 0.99203 1.21466 1.03392 0.96317 0.97598 1.17346 0.97701 0.79198 0.96032 1.91460 1.90891 1.33937 1.94918 0.89204 0.89379 0.93184 0.91018 0.88713 0.86586 0.89973 0.88629 0.89681 0.96156 0.97368 0.77236 0.94898 0.83514 0.80413 0.81202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.86 71.98 0.64 -2.65 16 2 C -0.05 -1.76 2.11 -12.29 -0.03 -1.79 16 3 H 0.11 3.17 6.71 -2.38 -0.02 3.16 16 4 C 0.50 20.50 6.53 87.66 0.57 21.07 16 5 O -0.51 -26.98 10.17 -3.02 -0.03 -27.01 16 6 N -0.62 -20.90 3.07 -788.05 -2.42 -23.31 16 7 C 0.09 1.84 6.37 86.86 0.55 2.40 16 8 C -0.12 -1.83 7.09 32.07 0.23 -1.61 16 9 C -0.11 -2.56 6.47 31.87 0.21 -2.36 16 10 C 0.13 4.73 3.02 45.34 0.14 4.86 16 11 H 0.04 1.80 8.11 -2.38 -0.02 1.78 16 12 C 0.14 6.55 5.62 86.38 0.49 7.03 16 13 N -0.73 -42.93 4.38 -343.47 -1.50 -44.44 16 14 C -0.25 -15.66 9.99 84.03 0.84 -14.82 16 15 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 16 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 17 N -0.94 -63.54 13.06 21.65 0.28 -63.26 16 18 Si 0.96 50.30 29.55 68.60 2.03 52.32 16 19 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 20 H -0.27 -13.52 7.11 99.48 0.71 -12.81 16 21 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 22 C -0.16 -5.84 4.63 -19.78 -0.09 -5.93 16 23 C 0.15 5.77 6.16 22.37 0.14 5.91 16 24 F -0.13 -5.81 13.08 44.97 0.59 -5.22 16 25 C -0.18 -5.98 10.03 22.32 0.22 -5.75 16 26 C -0.05 -1.42 10.04 22.26 0.22 -1.20 16 27 C -0.17 -4.52 10.02 22.32 0.22 -4.30 16 28 C 0.12 3.73 7.25 22.37 0.16 3.89 16 29 F -0.13 -4.04 16.19 44.97 0.73 -3.31 16 30 H 0.09 1.71 6.29 -2.38 -0.01 1.70 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.46 6.39 -2.38 -0.02 1.45 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.56 5.93 -2.39 -0.01 1.54 16 35 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 1.80 7.85 -2.39 -0.02 1.78 16 39 H 0.02 0.92 8.09 -2.39 -0.02 0.90 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.39 24.67 5.04 -92.71 -0.47 24.21 16 42 H 0.24 15.80 8.31 -92.71 -0.77 15.03 16 43 H 0.15 4.41 8.06 -2.91 -0.02 4.38 16 44 H 0.18 3.14 8.06 -2.91 -0.02 3.11 16 45 H 0.17 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -86.43 364.09 5.21 -81.22 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.56 Total: 32.11 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 4.98 Total: 0.90 kcal Atomic # 7 Polarization: -127.37 SS G_CDS: -3.64 Total: -131.01 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.03 Total: -27.01 kcal Atomic # 9 Polarization: -9.85 SS G_CDS: 1.32 Total: -8.53 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.03 Total: 52.32 kcal Total: -86.43 5.21 -81.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482060040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.471 kcal (2) G-P(sol) polarization free energy of solvation -86.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds