Wall clock time and date at job start Tue Mar 31 2020 20:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53188 * 109.49955 * 239.93411 * 2 1 3 5 5 N 1.46925 * 108.77700 * 185.38400 * 4 2 1 6 6 C 1.34784 * 120.62853 * 233.58870 * 5 4 2 7 7 O 1.21279 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99582 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.46998 * 179.97438 * 8 6 5 10 10 O 1.42898 * 109.47371 * 179.97438 * 9 8 6 11 11 C 1.42898 * 114.00220 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.47091 * 180.02562 * 11 10 9 13 13 F 1.39898 * 109.47384 * 60.00146 * 12 11 10 14 14 F 1.39903 * 109.47047 * 179.97438 * 12 11 10 15 15 F 1.39897 * 109.47234 * 299.99782 * 12 11 10 16 16 C 1.46920 * 118.73823 * 53.60843 * 5 4 2 17 17 C 1.53193 * 108.77550 * 306.39057 * 16 5 4 18 18 C 1.53040 * 109.31153 * 54.63854 * 17 16 5 19 19 H 1.08997 * 109.46043 * 178.61049 * 18 17 16 20 20 N 1.46505 * 109.46056 * 58.64998 * 18 17 16 21 21 C 1.36946 * 119.99484 * 84.93338 * 20 18 17 22 22 H 1.07997 * 120.00087 * 0.02562 * 21 20 18 23 23 C 1.38805 * 119.99308 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00858 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99517 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47207 * 60.00304 * 25 23 21 27 27 H 1.48495 * 109.47323 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47150 * 300.00420 * 25 23 21 29 29 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 31 31 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 32 32 H 1.09000 * 109.58701 * 305.17103 * 4 2 1 33 33 H 1.09007 * 109.58364 * 65.45081 * 4 2 1 34 34 H 1.09001 * 109.47077 * 299.99541 * 8 6 5 35 35 H 1.08999 * 109.47395 * 60.00261 * 8 6 5 36 36 H 1.09007 * 109.46993 * 300.00268 * 9 8 6 37 37 H 1.09004 * 109.46672 * 59.99544 * 9 8 6 38 38 H 1.09009 * 109.46790 * 300.00049 * 11 10 9 39 39 H 1.08996 * 109.46930 * 59.99857 * 11 10 9 40 40 H 1.09004 * 109.58885 * 66.17987 * 16 5 4 41 41 H 1.09000 * 109.58663 * 186.46129 * 16 5 4 42 42 H 1.09005 * 109.49580 * 174.58602 * 17 16 5 43 43 H 1.08994 * 109.49562 * 294.64929 * 17 16 5 44 44 H 0.96999 * 120.00270 * 264.93201 * 20 18 17 45 45 H 0.96993 * 120.00505 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2808 -0.3849 -2.1790 7 8 3.7723 0.1055 -3.1648 8 6 5.7803 -0.4999 -2.0825 9 6 6.4182 0.0719 -3.3503 10 8 7.8401 -0.0366 -3.2587 11 6 8.5365 0.4723 -4.3980 12 6 10.0432 0.3048 -4.1915 13 9 10.3436 -1.0518 -4.0290 14 9 10.7249 0.8025 -5.3072 15 9 10.4387 1.0101 -3.0499 16 6 4.1059 -1.4256 0.0300 17 6 3.5715 -0.6942 1.2655 18 6 2.0414 -0.7230 1.2482 19 1 1.6588 -0.2247 2.1389 20 7 1.5796 -2.1132 1.2305 21 6 1.4500 -2.8065 2.4044 22 1 1.6879 -2.3284 3.3430 23 6 1.0119 -4.1235 2.3877 24 7 0.7215 -4.7062 1.2438 25 14 0.8345 -5.0691 3.9889 26 1 -0.1430 -4.3770 4.8668 27 1 0.3546 -6.4446 3.7010 28 1 2.1513 -5.1376 4.6719 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6057 -1.7214 -1.2982 33 1 1.7611 -0.1589 -2.1391 34 1 6.1324 0.0580 -1.2148 35 1 6.0583 -1.5486 -1.9776 36 1 6.0660 -0.4863 -4.2178 37 1 6.1401 1.1206 -3.4557 38 1 8.2286 -0.0776 -5.2874 39 1 8.3021 1.5292 -4.5249 40 1 3.8386 -2.4808 0.0860 41 1 5.1903 -1.3252 -0.0159 42 1 3.9345 -1.1888 2.1664 43 1 3.9166 0.3396 1.2538 44 1 1.3656 -2.5425 0.3875 45 1 0.4150 -5.6264 1.2322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482426178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:40 Heat of formation + Delta-G solvation = -229.366866 kcal Electronic energy + Delta-G solvation = -29960.529101 eV Core-core repulsion = 25177.242392 eV Total energy + Delta-G solvation = -4783.286709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.43466 -47.99980 -47.88140 -40.20162 -38.61673 -37.69001 -34.34652 -33.07515 -32.17884 -31.41876 -29.64724 -29.20564 -26.49559 -25.16713 -23.69007 -23.58157 -23.25425 -21.69725 -19.57746 -19.00791 -18.96936 -18.32369 -17.92377 -17.48274 -17.22471 -16.65541 -16.13199 -15.57404 -15.34866 -14.80848 -14.78759 -14.62011 -14.35305 -14.27385 -14.18269 -14.06770 -14.05960 -13.99726 -13.75900 -13.33484 -13.24996 -12.83236 -12.55652 -12.28617 -12.09828 -11.83091 -11.70683 -11.49070 -11.35390 -11.21272 -10.92367 -10.82703 -10.53403 -10.50275 -10.25563 -10.24894 -9.88265 -9.68463 -9.58584 -8.96335 -8.30110 -7.01814 -5.82525 -3.11264 2.04486 2.70413 2.79359 3.29195 3.39659 3.45046 3.45753 3.47677 3.60956 4.08682 4.50922 4.54366 4.59079 4.60856 4.78202 4.82577 5.11217 5.23761 5.27190 5.32396 5.47259 5.50790 5.56429 5.56894 5.68751 5.77561 5.88408 6.01761 6.05350 6.20175 6.27987 6.36340 6.42225 6.46036 6.57448 6.64742 6.72028 6.88773 6.95550 7.62368 7.64886 8.25793 8.36006 9.47624 10.03853 10.38865 11.39766 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.002227 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.728202 B =12572.172088 C =13512.756383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.119 3.881 5 N -0.597 5.597 6 C 0.518 3.482 7 O -0.558 6.558 8 C -0.140 4.140 9 C 0.081 3.919 10 O -0.376 6.376 11 C 0.021 3.979 12 C 0.461 3.539 13 F -0.175 7.175 14 F -0.178 7.178 15 F -0.176 7.176 16 C 0.111 3.889 17 C -0.150 4.150 18 C 0.178 3.822 19 H 0.051 0.949 20 N -0.718 5.718 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.344 12.087 -10.699 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.003 4.003 5 N -0.328 5.328 6 C 0.306 3.694 7 O -0.438 6.438 8 C -0.179 4.179 9 C 0.005 3.995 10 O -0.295 6.295 11 C -0.058 4.058 12 C 0.407 3.593 13 F -0.157 7.157 14 F -0.160 7.160 15 F -0.157 7.157 16 C -0.012 4.012 17 C -0.191 4.191 18 C 0.067 3.933 19 H 0.069 0.931 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.164 12.160 -10.862 21.598 hybrid contribution 0.030 -0.754 0.624 0.979 sum 14.195 11.406 -10.238 20.890 Atomic orbital electron populations 1.21668 0.94204 1.03214 1.00447 1.21701 0.96530 0.98811 0.95749 0.91658 1.21662 0.78399 1.01660 0.98623 1.48107 1.07250 1.59340 1.18152 1.20176 0.88584 0.77887 0.82764 1.90669 1.75689 1.46131 1.31334 1.21485 0.92379 1.04730 0.99350 1.22293 0.77483 1.01434 0.98289 1.87836 1.19982 1.83226 1.38487 1.23474 0.86980 1.02991 0.92371 1.20200 0.90778 0.74300 0.74018 1.93226 1.94574 1.32615 1.95246 1.93210 1.82047 1.87674 1.53039 1.93222 1.92501 1.78656 1.51336 1.21801 0.96525 0.99186 0.83657 1.22526 1.00496 0.98637 0.97459 1.20221 0.90790 0.87390 0.94866 0.93095 1.42471 1.79023 1.07657 1.06941 1.19170 1.37408 0.93865 0.86560 0.91294 1.24703 1.02200 0.97194 0.96610 1.69630 1.51566 1.13158 1.23735 0.86311 0.77766 0.79216 0.83113 1.21363 1.21802 1.21344 0.91018 0.92785 0.93778 0.90573 0.89783 0.87809 0.87713 0.91524 0.91609 0.88437 0.88471 0.89502 0.90954 0.90634 0.93273 0.78106 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.06 37.16 0.34 -1.80 16 2 C -0.11 -1.69 2.67 -90.50 -0.24 -1.94 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.92 5.41 -3.71 -0.02 1.90 16 5 N -0.60 -8.99 2.97 -172.77 -0.51 -9.51 16 6 C 0.52 7.43 7.70 -10.98 -0.08 7.35 16 7 O -0.56 -9.46 15.40 5.56 0.09 -9.38 16 8 C -0.14 -1.51 4.42 -27.88 -0.12 -1.63 16 9 C 0.08 0.80 5.23 37.16 0.19 0.99 16 10 O -0.38 -3.66 10.23 -35.23 -0.36 -4.02 16 11 C 0.02 0.14 5.90 37.15 0.22 0.36 16 12 C 0.46 3.88 3.32 37.15 0.12 4.01 16 13 F -0.18 -1.76 17.26 2.25 0.04 -1.72 16 14 F -0.18 -1.43 17.32 2.25 0.04 -1.39 16 15 F -0.18 -1.74 17.26 2.25 0.04 -1.70 16 16 C 0.11 1.63 6.08 -3.71 -0.02 1.61 16 17 C -0.15 -2.33 5.78 -26.61 -0.15 -2.49 16 18 C 0.18 3.18 2.53 -67.89 -0.17 3.01 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 N -0.72 -16.00 3.64 -53.38 -0.19 -16.20 16 21 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 22 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -26.65 13.06 55.49 0.72 -25.92 16 25 Si 0.90 21.47 29.55 -169.99 -5.02 16.45 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.37 6.64 -51.93 -0.34 1.03 16 33 H 0.08 1.36 7.01 -51.92 -0.36 0.99 16 34 H 0.10 1.00 7.69 -51.93 -0.40 0.60 16 35 H 0.10 1.07 7.94 -51.93 -0.41 0.65 16 36 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 1.54 7.74 -51.93 -0.40 1.14 16 41 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.38 9.19 5.92 -40.82 -0.24 8.95 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -29.75 375.36 -6.33 -36.08 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -6.63 Total: 6.93 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -0.19 Total: 4.73 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.02 Total: -51.63 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.27 Total: -13.40 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.12 Total: -4.81 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.75 -6.33 -36.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482426178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.290 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds