Wall clock time and date at job start Tue Mar 31 2020 20:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53188 * 109.49955 * 239.93411 * 2 1 3 5 5 N 1.46925 * 108.77700 * 185.38400 * 4 2 1 6 6 C 1.34784 * 120.62853 * 233.58870 * 5 4 2 7 7 O 1.21279 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99582 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.46998 * 179.97438 * 8 6 5 10 10 O 1.42898 * 109.47371 * 179.97438 * 9 8 6 11 11 C 1.42898 * 114.00220 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.47091 * 180.02562 * 11 10 9 13 13 F 1.39898 * 109.47384 * 60.00146 * 12 11 10 14 14 F 1.39903 * 109.47047 * 179.97438 * 12 11 10 15 15 F 1.39897 * 109.47234 * 299.99782 * 12 11 10 16 16 C 1.46920 * 118.73823 * 53.60843 * 5 4 2 17 17 C 1.53193 * 108.77550 * 306.39057 * 16 5 4 18 18 C 1.53040 * 109.31153 * 54.63854 * 17 16 5 19 19 H 1.08997 * 109.46043 * 178.61049 * 18 17 16 20 20 N 1.46505 * 109.46056 * 58.64998 * 18 17 16 21 21 C 1.36946 * 119.99484 * 84.93338 * 20 18 17 22 22 H 1.07997 * 120.00087 * 0.02562 * 21 20 18 23 23 C 1.38805 * 119.99308 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00858 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99517 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47207 * 60.00304 * 25 23 21 27 27 H 1.48495 * 109.47323 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47150 * 300.00420 * 25 23 21 29 29 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 31 31 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 32 32 H 1.09000 * 109.58701 * 305.17103 * 4 2 1 33 33 H 1.09007 * 109.58364 * 65.45081 * 4 2 1 34 34 H 1.09001 * 109.47077 * 299.99541 * 8 6 5 35 35 H 1.08999 * 109.47395 * 60.00261 * 8 6 5 36 36 H 1.09007 * 109.46993 * 300.00268 * 9 8 6 37 37 H 1.09004 * 109.46672 * 59.99544 * 9 8 6 38 38 H 1.09009 * 109.46790 * 300.00049 * 11 10 9 39 39 H 1.08996 * 109.46930 * 59.99857 * 11 10 9 40 40 H 1.09004 * 109.58885 * 66.17987 * 16 5 4 41 41 H 1.09000 * 109.58663 * 186.46129 * 16 5 4 42 42 H 1.09005 * 109.49580 * 174.58602 * 17 16 5 43 43 H 1.08994 * 109.49562 * 294.64929 * 17 16 5 44 44 H 0.96999 * 120.00270 * 264.93201 * 20 18 17 45 45 H 0.96993 * 120.00505 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2808 -0.3849 -2.1790 7 8 3.7723 0.1055 -3.1648 8 6 5.7803 -0.4999 -2.0825 9 6 6.4182 0.0719 -3.3503 10 8 7.8401 -0.0366 -3.2587 11 6 8.5365 0.4723 -4.3980 12 6 10.0432 0.3048 -4.1915 13 9 10.3436 -1.0518 -4.0290 14 9 10.7249 0.8025 -5.3072 15 9 10.4387 1.0101 -3.0499 16 6 4.1059 -1.4256 0.0300 17 6 3.5715 -0.6942 1.2655 18 6 2.0414 -0.7230 1.2482 19 1 1.6588 -0.2247 2.1389 20 7 1.5796 -2.1132 1.2305 21 6 1.4500 -2.8065 2.4044 22 1 1.6879 -2.3284 3.3430 23 6 1.0119 -4.1235 2.3877 24 7 0.7215 -4.7062 1.2438 25 14 0.8345 -5.0691 3.9889 26 1 -0.1430 -4.3770 4.8668 27 1 0.3546 -6.4446 3.7010 28 1 2.1513 -5.1376 4.6719 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6057 -1.7214 -1.2982 33 1 1.7611 -0.1589 -2.1391 34 1 6.1324 0.0580 -1.2148 35 1 6.0583 -1.5486 -1.9776 36 1 6.0660 -0.4863 -4.2178 37 1 6.1401 1.1206 -3.4557 38 1 8.2286 -0.0776 -5.2874 39 1 8.3021 1.5292 -4.5249 40 1 3.8386 -2.4808 0.0860 41 1 5.1903 -1.3252 -0.0159 42 1 3.9345 -1.1888 2.1664 43 1 3.9166 0.3396 1.2538 44 1 1.3656 -2.5425 0.3875 45 1 0.4150 -5.6264 1.2322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482426178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:39 Heat of formation + Delta-G solvation = -247.035289 kcal Electronic energy + Delta-G solvation = -29961.295261 eV Core-core repulsion = 25177.242392 eV Total energy + Delta-G solvation = -4784.052869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.10768 -48.65985 -48.59476 -41.39454 -39.49759 -38.83472 -35.85413 -34.56146 -33.22979 -32.78866 -30.90019 -30.32846 -27.71292 -26.58362 -25.31471 -24.34676 -24.17938 -23.02561 -20.77073 -19.71862 -19.63917 -19.54694 -19.22350 -18.69532 -18.31791 -17.41771 -17.07685 -16.69794 -16.61112 -16.17804 -15.81177 -15.55359 -15.47910 -15.44839 -15.04423 -14.98059 -14.88589 -14.77208 -14.75725 -14.67076 -14.45604 -14.18355 -13.87115 -13.57552 -13.07129 -12.97527 -12.81648 -12.73345 -12.59431 -12.51415 -12.39945 -12.29509 -12.15071 -11.93920 -11.85522 -11.55752 -11.13568 -10.93625 -10.90936 -10.76342 -9.58606 -8.90275 -7.87351 -5.13191 1.39289 1.51063 1.51728 1.57577 1.58139 1.93475 2.39683 2.61077 2.84383 3.00731 3.36985 3.46547 3.61280 3.83603 3.90161 4.01132 4.06519 4.08975 4.12706 4.12959 4.14301 4.32879 4.42871 4.46205 4.59428 4.68575 4.73542 4.74221 4.79581 4.88196 5.00252 5.06421 5.16537 5.24787 5.32229 5.33347 5.50201 5.61974 5.66518 5.76426 6.34722 6.45961 7.10847 7.42327 8.19274 8.42275 9.35734 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.002227 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.728202 B =12572.172088 C =13512.756383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.087 0.913 4 C 0.124 3.876 5 N -0.600 5.600 6 C 0.518 3.482 7 O -0.585 6.585 8 C -0.135 4.135 9 C 0.086 3.914 10 O -0.391 6.391 11 C 0.018 3.982 12 C 0.460 3.540 13 F -0.187 7.187 14 F -0.176 7.176 15 F -0.186 7.186 16 C 0.117 3.883 17 C -0.143 4.143 18 C 0.170 3.830 19 H 0.046 0.954 20 N -0.725 5.725 21 C -0.226 4.226 22 H 0.075 0.925 23 C -0.073 4.073 24 N -0.969 5.969 25 Si 0.962 3.038 26 H -0.283 1.283 27 H -0.303 1.303 28 H -0.279 1.279 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.052 0.948 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.373 0.627 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.779 13.944 -10.570 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 H 0.105 0.895 4 C 0.001 3.999 5 N -0.331 5.331 6 C 0.308 3.692 7 O -0.466 6.466 8 C -0.174 4.174 9 C 0.010 3.990 10 O -0.311 6.311 11 C -0.060 4.060 12 C 0.406 3.594 13 F -0.169 7.169 14 F -0.158 7.158 15 F -0.168 7.168 16 C -0.005 4.005 17 C -0.183 4.183 18 C 0.061 3.939 19 H 0.064 0.936 20 N -0.366 5.366 21 C -0.358 4.358 22 H 0.093 0.907 23 C -0.265 4.265 24 N -0.621 5.621 25 Si 0.793 3.207 26 H -0.209 1.209 27 H -0.230 1.230 28 H -0.206 1.206 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.070 0.930 41 H 0.126 0.874 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.207 0.793 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.633 14.068 -10.713 23.602 hybrid contribution -0.376 -1.227 0.535 1.390 sum 15.257 12.841 -10.178 22.389 Atomic orbital electron populations 1.21607 0.94266 1.01416 1.01742 1.21619 0.96443 0.99379 0.94286 0.89450 1.21474 0.79467 1.00110 0.98855 1.48138 1.06765 1.59572 1.18639 1.20755 0.89949 0.76752 0.81751 1.90658 1.76543 1.47242 1.32182 1.21476 0.89449 1.05696 1.00811 1.22184 0.77638 1.01581 0.97573 1.87786 1.19782 1.83695 1.39813 1.23688 0.85381 1.04745 0.92158 1.20444 0.91657 0.73597 0.73676 1.93202 1.94764 1.33617 1.95313 1.93212 1.82161 1.87571 1.52822 1.93200 1.92722 1.78818 1.52011 1.21722 0.98513 0.96995 0.83271 1.22395 0.98132 1.00394 0.97400 1.20471 0.92535 0.85098 0.95779 0.93593 1.42585 1.79164 1.09282 1.05541 1.19528 1.34704 0.93819 0.87747 0.90718 1.25369 1.03670 0.98478 0.99027 1.69785 1.53880 1.12890 1.25506 0.85371 0.77823 0.77381 0.80121 1.20936 1.22979 1.20570 0.94278 0.92283 0.91690 0.93372 0.89713 0.85921 0.86902 0.91740 0.91139 0.86430 0.86123 0.92986 0.87361 0.91531 0.90328 0.79321 0.94408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.06 71.98 0.65 -3.38 16 2 C -0.10 -2.93 2.67 -10.72 -0.03 -2.96 16 3 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.12 3.94 5.41 86.36 0.47 4.41 16 5 N -0.60 -17.20 2.97 -818.91 -2.43 -19.64 16 6 C 0.52 13.82 7.70 87.65 0.67 14.50 16 7 O -0.58 -18.91 15.40 -3.03 -0.05 -18.96 16 8 C -0.13 -2.53 4.42 29.85 0.13 -2.39 16 9 C 0.09 1.47 5.23 71.98 0.38 1.84 16 10 O -0.39 -6.59 10.23 -148.98 -1.52 -8.11 16 11 C 0.02 0.21 5.90 71.98 0.42 0.63 16 12 C 0.46 6.97 3.32 71.98 0.24 7.21 16 13 F -0.19 -3.54 17.26 44.97 0.78 -2.77 16 14 F -0.18 -2.54 17.32 44.97 0.78 -1.77 16 15 F -0.19 -3.40 17.26 44.97 0.78 -2.62 16 16 C 0.12 3.27 6.08 86.36 0.53 3.79 16 17 C -0.14 -4.12 5.78 30.67 0.18 -3.95 16 18 C 0.17 5.89 2.53 45.02 0.11 6.01 16 19 H 0.05 1.65 8.08 -2.39 -0.02 1.63 16 20 N -0.72 -32.62 3.64 -322.81 -1.18 -33.80 16 21 C -0.23 -11.55 9.93 84.03 0.83 -10.72 16 22 H 0.07 3.68 7.83 -2.91 -0.02 3.65 16 23 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 24 N -0.97 -57.06 13.06 21.65 0.28 -56.78 16 25 Si 0.96 44.67 29.55 68.60 2.03 46.69 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 27 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 29 H 0.04 1.44 7.54 -2.39 -0.02 1.42 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.80 6.64 -2.39 -0.02 1.79 16 33 H 0.08 2.69 7.01 -2.38 -0.02 2.67 16 34 H 0.12 1.88 7.69 -2.39 -0.02 1.86 16 35 H 0.11 1.98 7.94 -2.39 -0.02 1.96 16 36 H 0.06 1.12 8.10 -2.38 -0.02 1.10 16 37 H 0.07 1.14 8.10 -2.38 -0.02 1.12 16 38 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.05 1.84 7.74 -2.38 -0.02 1.82 16 41 H 0.11 2.24 5.93 -2.39 -0.01 2.22 16 42 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.37 18.49 5.92 -92.71 -0.55 17.94 16 45 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -64.90 375.36 4.98 -59.92 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.46 Total: 26.36 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 5.05 Total: 11.46 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -3.33 Total: -110.21 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -1.57 Total: -27.07 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 2.33 Total: -7.16 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.90 4.98 -59.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482426178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.114 kcal (2) G-P(sol) polarization free energy of solvation -64.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds