Wall clock time and date at job start Tue Mar 31 2020 21:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46977 * 2 1 4 4 C 1.50701 * 109.46915 * 240.00333 * 2 1 3 5 5 O 1.21287 * 119.99682 * 239.99659 * 4 2 1 6 6 N 1.34773 * 120.00419 * 60.00341 * 4 2 1 7 7 C 1.46503 * 120.00358 * 179.97438 * 6 4 2 8 8 H 1.09002 * 109.46913 * 34.99538 * 7 6 4 9 9 C 1.52997 * 109.47269 * 154.99590 * 7 6 4 10 10 N 1.46505 * 109.47212 * 304.99931 * 9 7 6 11 11 C 1.36936 * 119.99992 * 179.97438 * 10 9 7 12 12 H 1.08006 * 119.99834 * 0.02562 * 11 10 9 13 13 C 1.38801 * 120.00093 * 180.02562 * 11 10 9 14 14 N 1.31622 * 120.00145 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 120.00180 * 0.02562 * 13 11 10 16 16 H 1.48492 * 109.47586 * 89.99558 * 15 13 11 17 17 H 1.48505 * 109.47293 * 210.00502 * 15 13 11 18 18 H 1.48505 * 109.46772 * 329.99807 * 15 13 11 19 19 C 1.52997 * 109.46834 * 274.99972 * 7 6 4 20 20 C 1.53002 * 117.50022 * 128.74672 * 19 7 6 21 21 C 1.52997 * 117.50076 * 60.08477 * 19 7 6 22 22 C 1.50691 * 109.46974 * 120.00362 * 2 1 3 23 23 C 1.38234 * 119.99332 * 59.99737 * 22 2 1 24 24 C 1.38181 * 120.05420 * 179.97438 * 23 22 2 25 25 C 1.38495 * 120.02683 * 359.97438 * 24 23 22 26 26 F 1.35101 * 120.01278 * 179.97438 * 25 24 23 27 27 C 1.38399 * 119.97268 * 0.02562 * 25 24 23 28 28 C 1.38445 * 119.95021 * 359.76401 * 27 25 24 29 29 F 1.35093 * 120.01238 * 180.22695 * 28 27 25 30 30 H 1.08993 * 109.46945 * 300.00068 * 1 2 3 31 31 H 1.09005 * 109.46525 * 59.99971 * 1 2 3 32 32 H 1.09003 * 109.46737 * 179.97438 * 1 2 3 33 33 H 0.97007 * 119.99723 * 359.97438 * 6 4 2 34 34 H 1.09002 * 109.47153 * 184.99923 * 9 7 6 35 35 H 1.09001 * 109.46832 * 65.00114 * 9 7 6 36 36 H 0.96996 * 119.99606 * 0.02562 * 10 9 7 37 37 H 0.97010 * 119.99864 * 180.02562 * 14 13 11 38 38 H 1.09003 * 115.54905 * 274.41110 * 19 7 6 39 39 H 1.09000 * 117.49650 * 359.97438 * 20 19 7 40 40 H 1.09001 * 117.49817 * 145.01411 * 20 19 7 41 41 H 1.08996 * 117.49862 * 214.97497 * 21 19 7 42 42 H 1.08996 * 117.50355 * 359.97438 * 21 19 7 43 43 H 1.07998 * 119.97009 * 359.97438 * 23 22 2 44 44 H 1.08002 * 119.98702 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.02380 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7297 -1.6965 -1.1193 6 7 1.7068 -0.2499 -2.4546 7 6 2.1956 -0.9401 -3.6508 8 1 2.2326 -2.0129 -3.4616 9 6 1.2516 -0.6611 -4.8221 10 7 -0.1144 -1.0362 -4.4485 11 6 -1.1380 -0.8743 -5.3435 12 1 -0.9382 -0.4705 -6.3251 13 6 -2.4323 -1.2292 -4.9894 14 7 -3.4161 -1.0741 -5.8499 15 14 -2.7781 -1.9270 -3.2914 16 1 -3.0912 -0.8181 -2.3548 17 1 -3.9348 -2.8554 -3.3638 18 1 -1.5828 -2.6625 -2.8058 19 6 3.5980 -0.4341 -3.9943 20 6 4.6928 -1.4804 -4.2124 21 6 4.6943 -0.6234 -2.9440 22 6 2.0323 -0.7104 1.2304 23 6 1.6982 -2.0339 1.4489 24 6 2.1585 -2.6867 2.5764 25 6 2.9558 -2.0158 3.4888 26 9 3.4052 -2.6542 4.5913 27 6 3.2910 -0.6908 3.2710 28 6 2.8328 -0.0390 2.1388 29 9 3.1630 1.2530 1.9228 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1489 0.5387 -2.5436 34 1 1.5646 -1.2446 -5.6880 35 1 1.2824 0.4002 -5.0688 36 1 -0.2938 -1.3985 -3.5668 37 1 -4.3208 -1.3218 -5.6022 38 1 3.6358 0.4685 -4.6042 39 1 4.4140 -2.5292 -4.1108 40 1 5.4511 -1.2659 -4.9655 41 1 5.4536 0.1544 -2.8632 42 1 4.4164 -1.1081 -2.0081 43 1 1.0769 -2.5580 0.7378 44 1 1.8965 -3.7206 2.7463 45 1 3.9123 -0.1667 3.9821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483608342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:37 Heat of formation + Delta-G solvation = -82.487867 kcal Electronic energy + Delta-G solvation = -29868.497917 eV Core-core repulsion = 25522.349584 eV Total energy + Delta-G solvation = -4346.148333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.10786 -50.04926 -41.51910 -39.90253 -38.39686 -36.75318 -35.35110 -34.79824 -33.26060 -31.85721 -30.55404 -29.59113 -26.10743 -25.54325 -24.26770 -23.56982 -23.13496 -22.91763 -21.45074 -21.10692 -19.79679 -19.32802 -18.57334 -17.77965 -17.64792 -17.00825 -16.84093 -16.68124 -16.50564 -16.44974 -16.34998 -16.01744 -15.54059 -15.27025 -15.22217 -14.96447 -14.74902 -14.59277 -13.97030 -13.85143 -13.78933 -13.54249 -13.38592 -13.08575 -12.85545 -12.80573 -12.70264 -12.54677 -12.31272 -12.25917 -12.18347 -12.08016 -11.82971 -11.25908 -11.10987 -11.00925 -10.70748 -10.09983 -9.96679 -9.68856 -9.31320 -8.01871 -5.35861 -0.15231 -0.01457 1.36183 1.40387 1.47279 1.59415 2.02732 2.39173 2.48041 2.78747 3.00626 3.25453 3.29914 3.39046 3.42559 3.51520 3.75843 3.85640 3.91038 4.01362 4.05927 4.09578 4.14826 4.23880 4.28265 4.42569 4.60881 4.62826 4.72821 4.78770 4.82345 4.82575 4.87407 4.90388 5.00699 5.04409 5.09006 5.17139 5.22997 5.28826 5.36031 5.54899 5.70051 5.77092 6.21032 6.55978 7.07735 7.23230 7.82086 8.01714 9.19443 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.003754 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.004765 B = 7456.921413 C = 8941.667475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 H 0.124 0.876 4 C 0.520 3.480 5 O -0.559 6.559 6 N -0.707 5.707 7 C 0.178 3.822 8 H 0.069 0.931 9 C 0.153 3.847 10 N -0.754 5.754 11 C -0.232 4.232 12 H 0.060 0.940 13 C -0.059 4.059 14 N -0.982 5.982 15 Si 0.947 3.053 16 H -0.264 1.264 17 H -0.301 1.301 18 H -0.261 1.261 19 C -0.164 4.164 20 C -0.166 4.166 21 C -0.181 4.181 22 C -0.112 4.112 23 C -0.037 4.037 24 C -0.159 4.159 25 C 0.121 3.879 26 F -0.135 7.135 27 C -0.191 4.191 28 C 0.128 3.872 29 F -0.131 7.131 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.411 0.589 34 H 0.040 0.960 35 H 0.045 0.955 36 H 0.366 0.634 37 H 0.257 0.743 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.139 0.861 44 H 0.159 0.841 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.694 2.775 18.636 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 H 0.142 0.858 4 C 0.307 3.693 5 O -0.438 6.438 6 N -0.358 5.358 7 C 0.073 3.927 8 H 0.087 0.913 9 C 0.026 3.974 10 N -0.400 5.400 11 C -0.363 4.363 12 H 0.078 0.922 13 C -0.251 4.251 14 N -0.633 5.633 15 Si 0.774 3.226 16 H -0.189 1.189 17 H -0.228 1.228 18 H -0.186 1.186 19 C -0.184 4.184 20 C -0.203 4.203 21 C -0.218 4.218 22 C -0.114 4.114 23 C -0.055 4.055 24 C -0.178 4.178 25 C 0.101 3.899 26 F -0.114 7.114 27 C -0.210 4.210 28 C 0.108 3.892 29 F -0.110 7.110 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.247 0.753 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.199 0.801 37 H 0.066 0.934 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.129 0.871 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.157 0.843 44 H 0.177 0.823 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 16.128 2.171 18.526 24.658 hybrid contribution -0.763 -0.081 0.531 0.933 sum 15.364 2.090 19.057 24.568 Atomic orbital electron populations 1.21896 0.90601 1.03396 1.04529 1.20195 0.98668 1.00934 0.88918 0.85773 1.20643 0.79510 0.84242 0.84898 1.90630 1.38851 1.27360 1.86964 1.45979 1.52752 1.32249 1.04819 1.20581 0.91584 0.96416 0.84143 0.91319 1.21014 0.82622 0.98829 0.94888 1.42633 1.03956 1.78343 1.15092 1.19014 0.87250 1.34170 0.95829 0.92173 1.25431 0.95477 1.02515 1.01644 1.69880 1.00304 1.56027 1.37058 0.85539 0.77320 0.78714 0.81036 1.18886 1.22821 1.18610 1.22558 0.89418 1.01946 1.04484 1.22979 1.00894 0.96222 1.00245 1.23183 1.00696 1.03223 0.94694 1.19501 1.00246 0.95494 0.96113 1.20769 0.96795 0.92475 0.95510 1.21374 0.99673 1.02407 0.94365 1.17366 0.97260 0.90501 0.84738 1.91523 1.87432 1.81608 1.50813 1.21097 1.05773 0.94572 0.99570 1.17096 0.97698 0.79170 0.95213 1.91502 1.90820 1.34053 1.94614 0.89214 0.90859 0.92313 0.75313 0.94215 0.93709 0.80074 0.93371 0.86343 0.89729 0.87057 0.88289 0.88517 0.84328 0.82347 0.81720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.90 71.98 0.64 -2.20 16 2 C -0.07 -1.36 2.88 -12.29 -0.04 -1.40 16 3 H 0.12 2.21 7.12 -2.39 -0.02 2.19 16 4 C 0.52 13.49 6.36 87.66 0.56 14.04 16 5 O -0.56 -17.31 12.14 -3.05 -0.04 -17.35 16 6 N -0.71 -18.28 4.39 -442.53 -1.94 -20.22 16 7 C 0.18 5.10 2.43 44.99 0.11 5.21 16 8 H 0.07 2.28 7.33 -2.39 -0.02 2.26 16 9 C 0.15 5.26 5.80 86.38 0.50 5.76 16 10 N -0.75 -32.65 5.24 -343.45 -1.80 -34.45 16 11 C -0.23 -12.57 10.47 84.03 0.88 -11.69 16 12 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 13 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 14 N -0.98 -61.23 13.97 21.65 0.30 -60.92 16 15 Si 0.95 43.42 27.74 68.60 1.90 45.33 16 16 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 18 H -0.26 -11.10 6.52 99.48 0.65 -10.45 16 19 C -0.16 -3.96 5.36 -10.80 -0.06 -4.02 16 20 C -0.17 -3.77 10.18 30.62 0.31 -3.46 16 21 C -0.18 -4.31 9.74 30.62 0.30 -4.01 16 22 C -0.11 -2.37 4.40 -19.82 -0.09 -2.46 16 23 C -0.04 -0.78 7.93 22.26 0.18 -0.60 16 24 C -0.16 -2.95 10.02 22.32 0.22 -2.73 16 25 C 0.12 2.28 7.30 22.37 0.16 2.44 16 26 F -0.14 -2.61 17.27 44.97 0.78 -1.84 16 27 C -0.19 -3.44 10.01 22.36 0.22 -3.22 16 28 C 0.13 2.57 7.24 22.37 0.16 2.73 16 29 F -0.13 -2.66 16.19 44.97 0.73 -1.93 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.45 7.56 -2.38 -0.02 1.43 16 32 H 0.06 1.23 7.39 -2.39 -0.02 1.21 16 33 H 0.41 9.69 8.02 -92.70 -0.74 8.94 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.37 15.35 5.20 -92.71 -0.48 14.87 16 37 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 38 H 0.12 2.57 8.11 -2.39 -0.02 2.55 16 39 H 0.08 2.09 8.05 -2.39 -0.02 2.07 16 40 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.10 2.77 5.02 -2.39 -0.01 2.76 16 43 H 0.14 2.96 7.51 -2.91 -0.02 2.94 16 44 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 45 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -66.46 376.70 4.22 -62.24 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -0.24 Total: 37.63 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 4.53 Total: -8.48 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -3.44 Total: -115.59 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.04 Total: -17.35 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 1.50 Total: -3.77 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.90 Total: 45.33 kcal Total: -66.46 4.22 -62.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483608342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.251 kcal (2) G-P(sol) polarization free energy of solvation -66.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds