Wall clock time and date at job start Tue Mar 31 2020 21:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47106 * 2 1 4 4 C 1.50694 * 109.47355 * 120.00049 * 2 1 3 5 5 O 1.21283 * 120.00363 * 120.00014 * 4 2 1 6 6 N 1.34784 * 119.99988 * 300.00132 * 4 2 1 7 7 C 1.46493 * 119.99864 * 179.72721 * 6 4 2 8 8 H 1.09003 * 109.47333 * 324.99821 * 7 6 4 9 9 C 1.53006 * 109.47135 * 204.99938 * 7 6 4 10 10 N 1.46500 * 109.47007 * 54.99771 * 9 7 6 11 11 C 1.36939 * 119.99949 * 180.02562 * 10 9 7 12 12 H 1.07990 * 119.99953 * 0.02562 * 11 10 9 13 13 C 1.38813 * 119.99878 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00156 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99953 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46576 * 90.00528 * 15 13 11 17 17 H 1.48494 * 109.47125 * 210.00496 * 15 13 11 18 18 H 1.48496 * 109.47036 * 330.00735 * 15 13 11 19 19 C 1.52999 * 109.47638 * 84.99998 * 7 6 4 20 20 C 1.53002 * 117.49733 * 8.74280 * 19 7 6 21 21 C 1.53001 * 117.49745 * 300.08497 * 19 7 6 22 22 C 1.50698 * 109.47177 * 240.00279 * 2 1 3 23 23 C 1.38234 * 119.98759 * 299.71891 * 22 2 1 24 24 C 1.38182 * 120.05337 * 179.76744 * 23 22 2 25 25 C 1.38495 * 120.02239 * 0.51081 * 24 23 22 26 26 F 1.35099 * 120.01217 * 179.76776 * 25 24 23 27 27 C 1.38400 * 119.97594 * 359.74352 * 25 24 23 28 28 C 1.38440 * 119.94811 * 0.02562 * 27 25 24 29 29 F 1.35098 * 120.01111 * 180.02562 * 28 27 25 30 30 H 1.08998 * 109.47544 * 60.00332 * 1 2 3 31 31 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47131 * 299.99885 * 1 2 3 33 33 H 0.97000 * 119.99339 * 0.02562 * 6 4 2 34 34 H 1.08994 * 109.47199 * 174.99984 * 9 7 6 35 35 H 1.08999 * 109.46831 * 295.00211 * 9 7 6 36 36 H 0.97001 * 119.99996 * 359.97438 * 10 9 7 37 37 H 0.96990 * 120.00071 * 179.97438 * 14 13 11 38 38 H 1.08996 * 115.55574 * 154.41145 * 19 7 6 39 39 H 1.09008 * 117.49503 * 0.02562 * 20 19 7 40 40 H 1.08995 * 117.50226 * 145.02106 * 20 19 7 41 41 H 1.08998 * 117.50012 * 214.97868 * 21 19 7 42 42 H 1.09003 * 117.49734 * 359.97438 * 21 19 7 43 43 H 1.08000 * 119.97279 * 0.02562 * 23 22 2 44 44 H 1.07999 * 119.99347 * 180.25671 * 24 23 22 45 45 H 1.07996 * 120.02126 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1902 -0.9440 3.6506 8 1 2.2226 -2.0168 3.4601 9 6 1.2455 -0.6621 4.8207 10 7 -0.1216 -1.0302 4.4442 11 6 -1.1460 -0.8647 5.3377 12 1 -0.9462 -0.4625 6.3197 13 6 -2.4415 -1.2130 4.9807 14 7 -2.6851 -1.7029 3.7835 15 14 -3.8388 -0.9879 6.1998 16 1 -4.4237 0.3673 6.0374 17 1 -4.8846 -2.0118 5.9486 18 1 -3.3188 -1.1403 7.5824 19 6 3.5944 -0.4451 3.9974 20 6 4.1268 0.7617 3.2220 21 6 4.6908 -0.6346 2.9472 22 6 2.0323 -0.7103 -1.2305 23 6 1.7030 -2.0354 -1.4461 24 6 2.1589 -2.6867 -2.5763 25 6 2.9552 -2.0154 -3.4892 26 9 3.4047 -2.6537 -4.5918 27 6 3.2899 -0.6902 -3.2717 28 6 2.8286 -0.0374 -2.1414 29 9 3.1542 1.2563 -1.9282 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.1488 0.5385 2.5435 34 1 1.5542 -1.2482 5.6863 35 1 1.2808 0.3987 5.0688 36 1 -0.3012 -1.3905 3.5616 37 1 -3.5901 -1.9466 3.5342 38 1 3.8802 -0.5359 5.0453 39 1 3.4764 1.2004 2.4652 40 1 4.7631 1.4646 3.7597 41 1 5.6979 -0.8497 3.3042 42 1 4.4118 -1.1151 2.0094 43 1 1.0855 -2.5609 -0.7327 44 1 1.8976 -3.7208 -2.7459 45 1 3.9105 -0.1659 -3.9833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483608343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:42 Heat of formation + Delta-G solvation = -65.112864 kcal Electronic energy + Delta-G solvation = -29867.582417 eV Core-core repulsion = 25522.187521 eV Total energy + Delta-G solvation = -4345.394896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.18141 -49.15060 -40.44105 -38.93150 -37.12102 -34.94222 -34.18040 -33.19437 -31.19953 -30.92037 -29.25684 -28.01213 -24.84881 -24.08792 -23.31734 -22.43846 -22.25233 -21.50232 -20.17917 -19.61458 -18.40397 -17.68100 -17.28977 -16.64421 -16.33128 -16.08117 -15.96478 -15.77405 -15.44144 -15.25682 -14.78093 -14.62316 -14.44537 -14.11269 -13.68691 -13.58634 -13.26772 -12.98671 -12.91083 -12.73979 -12.34135 -12.20031 -12.03563 -11.84088 -11.63605 -11.43057 -11.35284 -11.19030 -11.11413 -10.92443 -10.86068 -10.24985 -10.11837 -9.83856 -9.61379 -9.51660 -9.18352 -8.96418 -8.75601 -8.66283 -7.01139 -5.83617 -3.12936 0.78138 0.89715 2.80526 3.12555 3.38771 3.44923 3.46119 3.50280 3.69934 4.05347 4.21763 4.34798 4.41936 4.51924 4.67587 4.85951 4.92949 5.01215 5.12808 5.17454 5.18826 5.19605 5.49448 5.52099 5.59623 5.67535 5.74255 5.76450 5.80137 5.83892 5.85299 5.93945 5.98558 6.01039 6.15619 6.20701 6.28486 6.30498 6.45560 6.51206 6.60844 6.65969 6.89832 7.63931 7.78698 8.34521 8.45414 9.46827 10.01697 10.37649 11.38654 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012439 B = 0.003273 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.482342 B = 8552.428197 C = 9864.500571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 H 0.106 0.894 4 C 0.522 3.478 5 O -0.536 6.536 6 N -0.704 5.704 7 C 0.169 3.831 8 H 0.091 0.909 9 C 0.148 3.852 10 N -0.731 5.731 11 C -0.242 4.242 12 H 0.070 0.930 13 C -0.010 4.010 14 N -0.931 5.931 15 Si 0.906 3.094 16 H -0.290 1.290 17 H -0.292 1.292 18 H -0.282 1.282 19 C -0.160 4.160 20 C -0.177 4.177 21 C -0.187 4.187 22 C -0.102 4.102 23 C -0.024 4.024 24 C -0.162 4.162 25 C 0.125 3.875 26 F -0.135 7.135 27 C -0.196 4.196 28 C 0.134 3.866 29 F -0.131 7.131 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.405 0.595 34 H 0.034 0.966 35 H 0.026 0.974 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.158 4.048 -12.268 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.095 4.095 3 H 0.124 0.876 4 C 0.308 3.692 5 O -0.414 6.414 6 N -0.355 5.355 7 C 0.064 3.936 8 H 0.109 0.891 9 C 0.019 3.981 10 N -0.376 5.376 11 C -0.373 4.373 12 H 0.088 0.912 13 C -0.207 4.207 14 N -0.579 5.579 15 Si 0.737 3.263 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.208 1.208 19 C -0.180 4.180 20 C -0.214 4.214 21 C -0.224 4.224 22 C -0.104 4.104 23 C -0.042 4.042 24 C -0.181 4.181 25 C 0.106 3.894 26 F -0.113 7.113 27 C -0.216 4.216 28 C 0.114 3.886 29 F -0.109 7.109 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.241 0.759 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.135 0.865 43 H 0.163 0.837 44 H 0.160 0.840 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.583 3.396 -12.204 17.855 hybrid contribution -0.906 0.552 0.335 1.113 sum 11.677 3.948 -11.869 17.112 Atomic orbital electron populations 1.21817 0.90500 1.04092 1.03480 1.20236 0.98787 1.00278 0.90197 0.87582 1.20213 0.80013 0.84497 0.84467 1.90632 1.37913 1.26182 1.86630 1.45946 1.52570 1.31975 1.04992 1.20753 0.90691 0.97368 0.84768 0.89101 1.20914 0.85642 0.97961 0.93536 1.42328 1.01073 1.77398 1.16778 1.19204 0.86969 1.35688 0.95447 0.91183 1.24720 0.97382 1.01677 0.96885 1.69652 1.20032 1.49145 1.19055 0.86205 0.82335 0.77277 0.80434 1.21734 1.21784 1.20795 1.22697 0.94772 1.03049 0.97467 1.22876 1.03754 0.91210 1.03594 1.23336 0.97360 0.99489 1.02186 1.19458 0.99757 0.95226 0.95955 1.20774 0.96082 0.92353 0.95039 1.21201 1.00374 1.01656 0.94894 1.17292 0.97154 0.90296 0.84700 1.91516 1.87423 1.81592 1.50813 1.20886 1.06299 0.94650 0.99736 1.17061 0.97540 0.79037 0.94949 1.91502 1.90906 1.33897 1.94629 0.91507 0.91100 0.90440 0.75928 0.94845 0.95595 0.78012 0.93511 0.87338 0.89111 0.89550 0.89843 0.86540 0.83704 0.83984 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.90 37.16 0.33 -1.37 16 2 C -0.07 -0.90 2.88 -92.93 -0.27 -1.17 16 3 H 0.11 1.17 7.12 -51.93 -0.37 0.80 16 4 C 0.52 7.62 5.86 -10.98 -0.06 7.55 16 5 O -0.54 -9.08 12.10 5.56 0.07 -9.01 16 6 N -0.70 -10.27 2.95 -53.81 -0.16 -10.43 16 7 C 0.17 2.69 2.59 -67.93 -0.18 2.51 16 8 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 9 C 0.15 2.73 5.80 -4.04 -0.02 2.71 16 10 N -0.73 -17.10 5.43 -59.91 -0.33 -17.42 16 11 C -0.24 -6.40 9.99 -15.06 -0.15 -6.55 16 12 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 13 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 14 N -0.93 -26.62 13.06 55.49 0.72 -25.90 16 15 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.16 -2.21 5.71 -90.62 -0.52 -2.72 16 20 C -0.18 -2.24 9.74 -26.69 -0.26 -2.50 16 21 C -0.19 -2.56 9.82 -26.69 -0.26 -2.82 16 22 C -0.10 -1.26 4.41 -104.55 -0.46 -1.72 16 23 C -0.02 -0.29 7.92 -39.60 -0.31 -0.61 16 24 C -0.16 -1.77 10.03 -39.51 -0.40 -2.16 16 25 C 0.12 1.38 7.30 -39.43 -0.29 1.10 16 26 F -0.13 -1.51 17.27 2.25 0.04 -1.47 16 27 C -0.20 -2.11 10.01 -39.45 -0.39 -2.50 16 28 C 0.13 1.58 7.24 -39.43 -0.29 1.29 16 29 F -0.13 -1.55 16.19 2.25 0.04 -1.52 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.93 7.40 -51.92 -0.38 0.54 16 32 H 0.08 0.99 7.56 -51.93 -0.39 0.60 16 33 H 0.41 5.69 8.02 -40.82 -0.33 5.37 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.39 9.52 7.33 -40.82 -0.30 9.22 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.11 1.39 8.11 -51.93 -0.42 0.97 16 39 H 0.09 1.16 6.67 -51.92 -0.35 0.81 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.12 1.85 5.00 -51.93 -0.26 1.59 16 43 H 0.15 1.78 7.51 -52.49 -0.39 1.39 16 44 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 45 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 376.86 15.07 5.68 5.68 Total: -1.00 -29.36 376.86 -8.68 -38.04 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -6.09 Total: 14.80 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -3.63 Total: -9.35 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.24 Total: -53.76 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.08 Total: -2.99 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.36 -8.68 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483608343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.069 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds