Wall clock time and date at job start Tue Mar 31 2020 21:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47106 * 2 1 4 4 C 1.50694 * 109.47355 * 120.00049 * 2 1 3 5 5 O 1.21283 * 120.00363 * 120.00014 * 4 2 1 6 6 N 1.34784 * 119.99988 * 300.00132 * 4 2 1 7 7 C 1.46493 * 119.99864 * 179.72721 * 6 4 2 8 8 H 1.09003 * 109.47333 * 324.99821 * 7 6 4 9 9 C 1.53006 * 109.47135 * 204.99938 * 7 6 4 10 10 N 1.46500 * 109.47007 * 54.99771 * 9 7 6 11 11 C 1.36939 * 119.99949 * 180.02562 * 10 9 7 12 12 H 1.07990 * 119.99953 * 0.02562 * 11 10 9 13 13 C 1.38813 * 119.99878 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00156 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99953 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46576 * 90.00528 * 15 13 11 17 17 H 1.48494 * 109.47125 * 210.00496 * 15 13 11 18 18 H 1.48496 * 109.47036 * 330.00735 * 15 13 11 19 19 C 1.52999 * 109.47638 * 84.99998 * 7 6 4 20 20 C 1.53002 * 117.49733 * 8.74280 * 19 7 6 21 21 C 1.53001 * 117.49745 * 300.08497 * 19 7 6 22 22 C 1.50698 * 109.47177 * 240.00279 * 2 1 3 23 23 C 1.38234 * 119.98759 * 299.71891 * 22 2 1 24 24 C 1.38182 * 120.05337 * 179.76744 * 23 22 2 25 25 C 1.38495 * 120.02239 * 0.51081 * 24 23 22 26 26 F 1.35099 * 120.01217 * 179.76776 * 25 24 23 27 27 C 1.38400 * 119.97594 * 359.74352 * 25 24 23 28 28 C 1.38440 * 119.94811 * 0.02562 * 27 25 24 29 29 F 1.35098 * 120.01111 * 180.02562 * 28 27 25 30 30 H 1.08998 * 109.47544 * 60.00332 * 1 2 3 31 31 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47131 * 299.99885 * 1 2 3 33 33 H 0.97000 * 119.99339 * 0.02562 * 6 4 2 34 34 H 1.08994 * 109.47199 * 174.99984 * 9 7 6 35 35 H 1.08999 * 109.46831 * 295.00211 * 9 7 6 36 36 H 0.97001 * 119.99996 * 359.97438 * 10 9 7 37 37 H 0.96990 * 120.00071 * 179.97438 * 14 13 11 38 38 H 1.08996 * 115.55574 * 154.41145 * 19 7 6 39 39 H 1.09008 * 117.49503 * 0.02562 * 20 19 7 40 40 H 1.08995 * 117.50226 * 145.02106 * 20 19 7 41 41 H 1.08998 * 117.50012 * 214.97868 * 21 19 7 42 42 H 1.09003 * 117.49734 * 359.97438 * 21 19 7 43 43 H 1.08000 * 119.97279 * 0.02562 * 23 22 2 44 44 H 1.07999 * 119.99347 * 180.25671 * 24 23 22 45 45 H 1.07996 * 120.02126 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1902 -0.9440 3.6506 8 1 2.2226 -2.0168 3.4601 9 6 1.2455 -0.6621 4.8207 10 7 -0.1216 -1.0302 4.4442 11 6 -1.1460 -0.8647 5.3377 12 1 -0.9462 -0.4625 6.3197 13 6 -2.4415 -1.2130 4.9807 14 7 -2.6851 -1.7029 3.7835 15 14 -3.8388 -0.9879 6.1998 16 1 -4.4237 0.3673 6.0374 17 1 -4.8846 -2.0118 5.9486 18 1 -3.3188 -1.1403 7.5824 19 6 3.5944 -0.4451 3.9974 20 6 4.1268 0.7617 3.2220 21 6 4.6908 -0.6346 2.9472 22 6 2.0323 -0.7103 -1.2305 23 6 1.7030 -2.0354 -1.4461 24 6 2.1589 -2.6867 -2.5763 25 6 2.9552 -2.0154 -3.4892 26 9 3.4047 -2.6537 -4.5918 27 6 3.2899 -0.6902 -3.2717 28 6 2.8286 -0.0374 -2.1414 29 9 3.1542 1.2563 -1.9282 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.1488 0.5385 2.5435 34 1 1.5542 -1.2482 5.6863 35 1 1.2808 0.3987 5.0688 36 1 -0.3012 -1.3905 3.5616 37 1 -3.5901 -1.9466 3.5342 38 1 3.8802 -0.5359 5.0453 39 1 3.4764 1.2004 2.4652 40 1 4.7631 1.4646 3.7597 41 1 5.6979 -0.8497 3.3042 42 1 4.4118 -1.1151 2.0094 43 1 1.0855 -2.5609 -0.7327 44 1 1.8976 -3.7208 -2.7459 45 1 3.9105 -0.1659 -3.9833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483608343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:41 Heat of formation + Delta-G solvation = -79.945384 kcal Electronic energy + Delta-G solvation = -29868.225603 eV Core-core repulsion = 25522.187521 eV Total energy + Delta-G solvation = -4346.038082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.08952 -50.03098 -41.58536 -39.92394 -38.29157 -36.53236 -35.29144 -34.59477 -32.92817 -31.83076 -30.37337 -29.44018 -26.10494 -25.65876 -24.24911 -23.55790 -23.36051 -22.90035 -21.29770 -20.80908 -19.30946 -19.26243 -18.53041 -17.75126 -17.44856 -17.20568 -16.97785 -16.78031 -16.59066 -16.34138 -16.17818 -15.72069 -15.51276 -15.23907 -15.11464 -14.96006 -14.78285 -14.43765 -13.87732 -13.80152 -13.57787 -13.34681 -13.12161 -13.04477 -12.82989 -12.76805 -12.67048 -12.63397 -12.33054 -12.23247 -12.13219 -12.06399 -11.81319 -11.25040 -10.95824 -10.83347 -10.67094 -10.07573 -9.90931 -9.66627 -8.96991 -7.91147 -5.19672 -0.13028 0.00805 1.50723 1.51444 1.59353 1.63584 2.10533 2.45278 2.58061 2.80402 2.96988 3.28233 3.41228 3.43349 3.51984 3.64366 3.79257 3.90693 4.00483 4.06973 4.11204 4.14371 4.21483 4.27187 4.44012 4.52730 4.64551 4.68482 4.76765 4.82621 4.84626 4.86218 4.90031 4.92311 5.03273 5.07138 5.17200 5.23149 5.27663 5.29439 5.39957 5.54159 5.61859 5.72243 6.29806 6.59624 7.27530 7.38144 8.10573 8.35849 9.31338 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012439 B = 0.003273 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.482342 B = 8552.428197 C = 9864.500571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 H 0.122 0.878 4 C 0.521 3.479 5 O -0.560 6.560 6 N -0.702 5.702 7 C 0.180 3.820 8 H 0.063 0.937 9 C 0.150 3.850 10 N -0.740 5.740 11 C -0.243 4.243 12 H 0.075 0.925 13 C -0.067 4.067 14 N -0.962 5.962 15 Si 0.967 3.033 16 H -0.287 1.287 17 H -0.299 1.299 18 H -0.273 1.273 19 C -0.166 4.166 20 C -0.162 4.162 21 C -0.190 4.190 22 C -0.112 4.112 23 C -0.036 4.036 24 C -0.160 4.160 25 C 0.121 3.879 26 F -0.134 7.134 27 C -0.190 4.190 28 C 0.127 3.873 29 F -0.131 7.131 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.409 0.591 34 H 0.034 0.966 35 H 0.039 0.961 36 H 0.377 0.623 37 H 0.250 0.750 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.135 0.865 44 H 0.159 0.841 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.121 5.328 -12.233 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.086 4.086 3 H 0.140 0.860 4 C 0.308 3.692 5 O -0.439 6.439 6 N -0.352 5.352 7 C 0.075 3.925 8 H 0.081 0.919 9 C 0.024 3.976 10 N -0.384 5.384 11 C -0.375 4.375 12 H 0.093 0.907 13 C -0.260 4.260 14 N -0.613 5.613 15 Si 0.797 3.203 16 H -0.214 1.214 17 H -0.226 1.226 18 H -0.198 1.198 19 C -0.185 4.185 20 C -0.199 4.199 21 C -0.227 4.227 22 C -0.113 4.113 23 C -0.055 4.055 24 C -0.178 4.178 25 C 0.102 3.898 26 F -0.113 7.113 27 C -0.209 4.209 28 C 0.108 3.892 29 F -0.110 7.110 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.245 0.755 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.209 0.791 37 H 0.059 0.941 38 H 0.140 0.860 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.153 0.847 44 H 0.176 0.824 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 13.576 4.702 -12.146 18.813 hybrid contribution -1.134 0.123 0.315 1.183 sum 12.443 4.826 -11.831 17.835 Atomic orbital electron populations 1.21757 0.90430 1.03161 1.03934 1.20180 0.98635 1.00713 0.89035 0.86011 1.20613 0.79445 0.84192 0.84948 1.90623 1.39038 1.27306 1.86974 1.45894 1.52613 1.31899 1.04806 1.20458 0.91594 0.96111 0.84321 0.91859 1.21010 0.83785 0.98284 0.94560 1.42468 1.02527 1.77352 1.16009 1.19571 0.87774 1.34267 0.95909 0.90660 1.25440 0.99661 1.02455 0.98480 1.69796 1.19980 1.50785 1.20694 0.85235 0.79373 0.76815 0.78860 1.21362 1.22640 1.19829 1.22622 0.93268 1.04337 0.98286 1.22955 1.03195 0.90875 1.02915 1.23270 0.97911 1.00383 1.01106 1.19502 1.00275 0.95429 0.96107 1.20754 0.96663 0.92550 0.95498 1.21367 0.99758 1.02422 0.94288 1.17340 0.97239 0.90517 0.84717 1.91520 1.87413 1.81613 1.50754 1.21086 1.05745 0.94512 0.99560 1.17084 0.97761 0.79116 0.95259 1.91499 1.90927 1.33853 1.94674 0.89609 0.92716 0.91340 0.75515 0.94770 0.94356 0.79095 0.94139 0.86012 0.89272 0.87437 0.88320 0.88746 0.84685 0.82375 0.81560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.90 71.98 0.64 -2.62 16 2 C -0.06 -1.55 2.88 -12.29 -0.04 -1.59 16 3 H 0.12 2.53 7.12 -2.39 -0.02 2.52 16 4 C 0.52 15.33 5.86 87.65 0.51 15.84 16 5 O -0.56 -19.39 12.10 -3.04 -0.04 -19.43 16 6 N -0.70 -20.47 2.95 -442.53 -1.30 -21.77 16 7 C 0.18 5.72 2.59 44.99 0.12 5.84 16 8 H 0.06 2.37 7.58 -2.39 -0.02 2.35 16 9 C 0.15 5.49 5.80 86.38 0.50 5.99 16 10 N -0.74 -34.77 5.43 -343.45 -1.87 -36.64 16 11 C -0.24 -12.80 9.99 84.03 0.84 -11.96 16 12 H 0.08 3.81 7.83 -2.92 -0.02 3.79 16 13 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 14 N -0.96 -55.86 13.06 21.65 0.28 -55.58 16 15 Si 0.97 44.39 29.55 68.60 2.03 46.42 16 16 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 19 C -0.17 -4.33 5.71 -10.79 -0.06 -4.40 16 20 C -0.16 -3.74 9.74 30.62 0.30 -3.44 16 21 C -0.19 -4.95 9.82 30.62 0.30 -4.65 16 22 C -0.11 -2.70 4.41 -19.82 -0.09 -2.78 16 23 C -0.04 -0.88 7.92 22.26 0.18 -0.71 16 24 C -0.16 -3.37 10.03 22.32 0.22 -3.15 16 25 C 0.12 2.53 7.30 22.37 0.16 2.69 16 26 F -0.13 -2.81 17.27 44.97 0.78 -2.03 16 27 C -0.19 -3.77 10.01 22.36 0.22 -3.55 16 28 C 0.13 2.85 7.24 22.37 0.16 3.01 16 29 F -0.13 -2.90 16.19 44.97 0.73 -2.17 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 1.49 7.40 -2.38 -0.02 1.47 16 32 H 0.07 1.76 7.56 -2.39 -0.02 1.74 16 33 H 0.41 11.37 8.02 -92.71 -0.74 10.63 16 34 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.38 18.97 7.33 -92.71 -0.68 18.29 16 37 H 0.25 14.20 8.31 -92.72 -0.77 13.43 16 38 H 0.12 2.87 8.11 -2.39 -0.02 2.85 16 39 H 0.09 2.09 6.67 -2.38 -0.02 2.08 16 40 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.09 2.97 5.00 -2.39 -0.01 2.95 16 43 H 0.14 3.49 7.51 -2.91 -0.02 3.47 16 44 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 45 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -62.02 376.86 4.67 -57.35 By element: Atomic # 1 Polarization: 42.93 SS G_CDS: -0.38 Total: 42.55 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 4.44 Total: -8.70 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -2.89 Total: -113.99 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.04 Total: -19.43 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 1.50 Total: -4.20 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -62.02 4.67 -57.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483608343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.597 kcal (2) G-P(sol) polarization free energy of solvation -62.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds