Wall clock time and date at job start Tue Mar 31 2020 21:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47135 * 2 1 4 4 C 1.50697 * 109.47296 * 119.99870 * 2 1 3 5 5 O 1.21277 * 120.00279 * 120.00088 * 4 2 1 6 6 N 1.34779 * 120.00100 * 300.00088 * 4 2 1 7 7 C 1.46500 * 120.00319 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47369 * 175.67929 * 7 6 4 9 9 N 1.46506 * 112.90439 * 311.32063 * 8 7 6 10 10 C 1.36932 * 120.00014 * 292.59549 * 9 8 7 11 11 H 1.07996 * 120.00132 * 5.77764 * 10 9 8 12 12 C 1.38816 * 120.00018 * 185.77389 * 10 9 8 13 13 N 1.31619 * 119.99984 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00108 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47373 * 89.99916 * 14 12 10 16 16 H 1.48502 * 109.47055 * 210.00197 * 14 12 10 17 17 H 1.48505 * 109.47118 * 329.99852 * 14 12 10 18 18 C 1.53777 * 113.61686 * 180.02562 * 8 7 6 19 19 C 1.53777 * 87.08128 * 220.01627 * 18 8 7 20 20 C 1.53780 * 113.61634 * 82.57138 * 8 7 6 21 21 C 1.50696 * 109.47093 * 240.00157 * 2 1 3 22 22 C 1.38234 * 119.98661 * 299.71759 * 21 2 1 23 23 C 1.38188 * 120.04966 * 179.76841 * 22 21 2 24 24 C 1.38496 * 120.02623 * 0.51033 * 23 22 21 25 25 F 1.35099 * 120.01246 * 179.76485 * 24 23 22 26 26 C 1.38401 * 119.97135 * 359.75072 * 24 23 22 27 27 C 1.38437 * 119.95050 * 359.97438 * 26 24 23 28 28 F 1.35105 * 120.00930 * 180.02562 * 27 26 24 29 29 H 1.08997 * 109.47149 * 60.00045 * 1 2 3 30 30 H 1.08994 * 109.47126 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47355 * 300.00190 * 1 2 3 32 32 H 0.97002 * 119.99959 * 359.97438 * 6 4 2 33 33 H 1.09003 * 109.46774 * 55.67402 * 7 6 4 34 34 H 1.08999 * 109.47134 * 295.67843 * 7 6 4 35 35 H 0.97005 * 119.99601 * 112.59664 * 9 8 7 36 36 H 0.96993 * 120.00297 * 179.97438 * 13 12 10 37 37 H 1.09000 * 113.61571 * 105.46508 * 18 8 7 38 38 H 1.09000 * 113.61346 * 334.56590 * 18 8 7 39 39 H 1.09002 * 113.61200 * 139.97728 * 19 18 8 40 40 H 1.08996 * 113.61231 * 270.88098 * 19 18 8 41 41 H 1.08999 * 113.60997 * 25.43472 * 20 8 7 42 42 H 1.09002 * 113.69108 * 254.54312 * 20 8 7 43 43 H 1.07998 * 119.97570 * 0.02820 * 22 21 2 44 44 H 1.07994 * 119.98441 * 180.25841 * 23 22 21 45 45 H 1.08005 * 120.01972 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6964 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1947 -0.9408 3.6508 8 6 1.7755 -0.1595 4.8976 9 7 2.0796 1.2706 4.8035 10 6 3.3817 1.6941 4.7878 11 1 4.1839 0.9721 4.7506 12 6 3.6705 3.0515 4.8197 13 7 2.6927 3.9315 4.8654 14 14 5.4467 3.6293 4.7976 15 1 5.8873 3.8216 3.3925 16 1 5.5580 4.9153 5.5318 17 1 6.3069 2.6102 5.4510 18 6 2.2414 -0.8037 6.2139 19 6 0.8711 -0.4188 6.7959 20 6 0.3372 -0.4546 5.3550 21 6 2.0323 -0.7104 -1.2305 22 6 1.7030 -2.0355 -1.4460 23 6 2.1590 -2.6868 -2.5763 24 6 2.9552 -2.0155 -3.4892 25 9 3.4048 -2.6539 -4.5917 26 6 3.2900 -0.6903 -3.2717 27 6 2.8280 -0.0372 -2.1418 28 9 3.1536 1.2566 -1.9286 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.1494 0.5390 2.5436 33 1 3.2819 -1.0088 3.6130 34 1 1.7691 -1.9435 3.6902 35 1 1.3585 1.9174 4.7522 36 1 2.8945 4.8799 4.8880 37 1 3.0767 -0.2837 6.6829 38 1 2.3985 -1.8799 6.1417 39 1 0.4395 -1.1850 7.4401 40 1 0.8508 0.5740 7.2452 41 1 -0.0259 -1.4355 5.0480 42 1 -0.3669 0.3467 5.1306 43 1 1.0855 -2.5610 -0.7327 44 1 1.8976 -3.7208 -2.7457 45 1 3.9106 -0.1659 -3.9833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484664568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:47 Heat of formation + Delta-G solvation = -74.672576 kcal Electronic energy + Delta-G solvation = -29596.221781 eV Core-core repulsion = 25250.412345 eV Total energy + Delta-G solvation = -4345.809436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.15298 -49.07606 -40.11646 -39.01019 -38.13374 -34.17461 -33.89085 -33.25058 -30.94893 -30.07727 -29.29557 -27.23886 -25.29359 -24.78989 -23.85416 -23.27853 -22.39607 -21.34632 -19.73412 -18.37203 -18.24701 -17.53942 -17.18316 -16.79100 -16.16442 -16.00961 -15.81081 -15.43621 -15.35145 -14.83023 -14.79926 -14.55666 -14.37220 -14.11401 -13.95099 -13.51917 -13.26157 -13.03274 -12.91639 -12.67425 -12.47650 -12.15353 -12.06323 -11.83695 -11.70913 -11.34744 -11.22533 -11.21471 -11.04692 -10.85641 -10.38790 -10.22406 -10.18810 -9.73418 -9.53980 -9.43930 -9.17095 -8.93327 -8.71787 -8.49589 -7.09805 -5.86763 -3.16918 0.79678 0.90460 2.97152 3.17180 3.39509 3.46121 3.46588 3.66404 3.74312 4.24805 4.36428 4.44037 4.51187 4.67723 4.92309 5.05435 5.08547 5.16233 5.19347 5.22288 5.28584 5.45125 5.47316 5.54104 5.66209 5.68419 5.73041 5.74350 5.79323 5.89003 5.99551 6.03057 6.10301 6.16938 6.17527 6.31660 6.36403 6.45837 6.62063 6.71730 6.84024 6.97336 7.06346 7.67666 7.98967 8.31724 8.61611 9.43428 9.95677 10.31110 11.35017 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012084 B = 0.003341 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.519387 B = 8377.564972 C = 9764.263365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 H 0.112 0.888 4 C 0.516 3.484 5 O -0.550 6.550 6 N -0.696 5.696 7 C 0.121 3.879 8 C 0.173 3.827 9 N -0.699 5.699 10 C -0.235 4.235 11 H 0.070 0.930 12 C -0.007 4.007 13 N -0.930 5.930 14 Si 0.903 3.097 15 H -0.290 1.290 16 H -0.291 1.291 17 H -0.282 1.282 18 C -0.150 4.150 19 C -0.129 4.129 20 C -0.144 4.144 21 C -0.102 4.102 22 C -0.027 4.027 23 C -0.165 4.165 24 C 0.125 3.875 25 F -0.135 7.135 26 C -0.195 4.195 27 C 0.137 3.863 28 F -0.127 7.127 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.404 0.596 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.463 -10.988 -11.559 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.098 4.098 3 H 0.130 0.870 4 C 0.301 3.699 5 O -0.429 6.429 6 N -0.345 5.345 7 C -0.005 4.005 8 C 0.079 3.921 9 N -0.340 5.340 10 C -0.365 4.365 11 H 0.088 0.912 12 C -0.203 4.203 13 N -0.578 5.578 14 Si 0.734 3.266 15 H -0.217 1.217 16 H -0.218 1.218 17 H -0.207 1.207 18 C -0.190 4.190 19 C -0.166 4.166 20 C -0.181 4.181 21 C -0.104 4.104 22 C -0.045 4.045 23 C -0.184 4.184 24 C 0.105 3.895 25 F -0.114 7.114 26 C -0.215 4.215 27 C 0.118 3.882 28 F -0.105 7.105 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.239 0.761 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.221 0.779 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.751 -11.594 -11.613 17.745 hybrid contribution 0.921 1.239 -0.119 1.548 sum -5.830 -10.355 -11.732 16.699 Atomic orbital electron populations 1.21781 0.91538 1.02893 1.03355 1.20236 0.98072 1.01134 0.90400 0.86970 1.20154 0.80564 0.84645 0.84537 1.90672 1.38398 1.26949 1.86831 1.45690 1.52381 1.31563 1.04869 1.21816 0.99605 0.94232 0.84844 1.20832 0.93268 0.86986 0.90966 1.42056 1.05758 0.98746 1.87442 1.19076 0.84007 0.90676 1.42790 0.91241 1.24704 0.97166 0.95895 1.02535 1.69641 1.30005 1.00885 1.57290 0.86259 0.84756 0.78025 0.77584 1.21694 1.21771 1.20720 1.23278 0.97966 0.99156 0.98603 1.22615 0.97013 1.01382 0.95595 1.23170 0.96743 1.00958 0.97271 1.19481 0.99835 0.95214 0.95825 1.20665 0.96604 0.92295 0.94941 1.21150 1.00751 1.01475 0.95041 1.17276 0.97179 0.90293 0.84729 1.91514 1.87448 1.81572 1.50826 1.20927 1.06101 0.94658 0.99796 1.17115 0.97116 0.79260 0.94748 1.91544 1.90763 1.33643 1.94559 0.91301 0.91839 0.91006 0.76077 0.91847 0.92760 0.77909 0.93460 0.90616 0.91416 0.92806 0.89973 0.90530 0.91715 0.84100 0.84112 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.90 37.16 0.33 -1.03 16 2 C -0.08 -1.01 2.88 -92.93 -0.27 -1.28 16 3 H 0.11 1.56 7.13 -51.93 -0.37 1.19 16 4 C 0.52 8.39 7.02 -10.99 -0.08 8.32 16 5 O -0.55 -10.48 15.09 5.56 0.08 -10.40 16 6 N -0.70 -11.34 5.28 -60.30 -0.32 -11.65 16 7 C 0.12 2.10 5.06 -4.04 -0.02 2.08 16 8 C 0.17 3.03 0.91 -131.01 -0.12 2.91 16 9 N -0.70 -15.36 4.56 -46.48 -0.21 -15.57 16 10 C -0.23 -6.00 9.24 -15.06 -0.14 -6.14 16 11 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 12 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 13 N -0.93 -26.28 13.07 55.49 0.73 -25.56 16 14 Si 0.90 21.95 29.55 -169.99 -5.02 16.93 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 C -0.15 -2.52 7.27 -25.92 -0.19 -2.71 16 19 C -0.13 -1.96 7.99 -25.96 -0.21 -2.17 16 20 C -0.14 -2.10 7.36 -25.96 -0.19 -2.29 16 21 C -0.10 -1.32 4.41 -104.55 -0.46 -1.79 16 22 C -0.03 -0.31 7.92 -39.60 -0.31 -0.62 16 23 C -0.17 -1.74 10.03 -39.50 -0.40 -2.14 16 24 C 0.12 1.41 7.30 -39.43 -0.29 1.13 16 25 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 26 C -0.20 -2.28 10.01 -39.45 -0.39 -2.67 16 27 C 0.14 1.81 7.24 -39.43 -0.29 1.52 16 28 F -0.13 -1.81 16.19 2.25 0.04 -1.78 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.56 7.40 -51.93 -0.38 0.18 16 31 H 0.07 0.68 7.57 -51.93 -0.39 0.28 16 32 H 0.40 6.37 7.52 -40.82 -0.31 6.06 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 0.86 7.94 -51.93 -0.41 0.45 16 35 H 0.39 9.03 7.89 -40.82 -0.32 8.71 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.08 1.46 7.79 -51.93 -0.40 1.05 16 38 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.08 0.98 7.96 -51.93 -0.41 0.56 16 42 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 43 H 0.14 1.48 7.51 -52.49 -0.39 1.09 16 44 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -29.53 381.10 -8.37 -37.90 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -6.32 Total: 13.04 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -3.11 Total: -7.15 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.19 Total: -52.79 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.08 Total: -3.27 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.53 -8.37 -37.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484664568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.773 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds