Wall clock time and date at job start Tue Mar 31 2020 21:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47135 * 2 1 4 4 C 1.50697 * 109.47296 * 119.99870 * 2 1 3 5 5 O 1.21277 * 120.00279 * 120.00088 * 4 2 1 6 6 N 1.34779 * 120.00100 * 300.00088 * 4 2 1 7 7 C 1.46500 * 120.00319 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47369 * 175.67929 * 7 6 4 9 9 N 1.46506 * 112.90439 * 311.32063 * 8 7 6 10 10 C 1.36932 * 120.00014 * 292.59549 * 9 8 7 11 11 H 1.07996 * 120.00132 * 5.77764 * 10 9 8 12 12 C 1.38816 * 120.00018 * 185.77389 * 10 9 8 13 13 N 1.31619 * 119.99984 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00108 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47373 * 89.99916 * 14 12 10 16 16 H 1.48502 * 109.47055 * 210.00197 * 14 12 10 17 17 H 1.48505 * 109.47118 * 329.99852 * 14 12 10 18 18 C 1.53777 * 113.61686 * 180.02562 * 8 7 6 19 19 C 1.53777 * 87.08128 * 220.01627 * 18 8 7 20 20 C 1.53780 * 113.61634 * 82.57138 * 8 7 6 21 21 C 1.50696 * 109.47093 * 240.00157 * 2 1 3 22 22 C 1.38234 * 119.98661 * 299.71759 * 21 2 1 23 23 C 1.38188 * 120.04966 * 179.76841 * 22 21 2 24 24 C 1.38496 * 120.02623 * 0.51033 * 23 22 21 25 25 F 1.35099 * 120.01246 * 179.76485 * 24 23 22 26 26 C 1.38401 * 119.97135 * 359.75072 * 24 23 22 27 27 C 1.38437 * 119.95050 * 359.97438 * 26 24 23 28 28 F 1.35105 * 120.00930 * 180.02562 * 27 26 24 29 29 H 1.08997 * 109.47149 * 60.00045 * 1 2 3 30 30 H 1.08994 * 109.47126 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47355 * 300.00190 * 1 2 3 32 32 H 0.97002 * 119.99959 * 359.97438 * 6 4 2 33 33 H 1.09003 * 109.46774 * 55.67402 * 7 6 4 34 34 H 1.08999 * 109.47134 * 295.67843 * 7 6 4 35 35 H 0.97005 * 119.99601 * 112.59664 * 9 8 7 36 36 H 0.96993 * 120.00297 * 179.97438 * 13 12 10 37 37 H 1.09000 * 113.61571 * 105.46508 * 18 8 7 38 38 H 1.09000 * 113.61346 * 334.56590 * 18 8 7 39 39 H 1.09002 * 113.61200 * 139.97728 * 19 18 8 40 40 H 1.08996 * 113.61231 * 270.88098 * 19 18 8 41 41 H 1.08999 * 113.60997 * 25.43472 * 20 8 7 42 42 H 1.09002 * 113.69108 * 254.54312 * 20 8 7 43 43 H 1.07998 * 119.97570 * 0.02820 * 22 21 2 44 44 H 1.07994 * 119.98441 * 180.25841 * 23 22 21 45 45 H 1.08005 * 120.01972 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6964 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1947 -0.9408 3.6508 8 6 1.7755 -0.1595 4.8976 9 7 2.0796 1.2706 4.8035 10 6 3.3817 1.6941 4.7878 11 1 4.1839 0.9721 4.7506 12 6 3.6705 3.0515 4.8197 13 7 2.6927 3.9315 4.8654 14 14 5.4467 3.6293 4.7976 15 1 5.8873 3.8216 3.3925 16 1 5.5580 4.9153 5.5318 17 1 6.3069 2.6102 5.4510 18 6 2.2414 -0.8037 6.2139 19 6 0.8711 -0.4188 6.7959 20 6 0.3372 -0.4546 5.3550 21 6 2.0323 -0.7104 -1.2305 22 6 1.7030 -2.0355 -1.4460 23 6 2.1590 -2.6868 -2.5763 24 6 2.9552 -2.0155 -3.4892 25 9 3.4048 -2.6539 -4.5917 26 6 3.2900 -0.6903 -3.2717 27 6 2.8280 -0.0372 -2.1418 28 9 3.1536 1.2566 -1.9286 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.1494 0.5390 2.5436 33 1 3.2819 -1.0088 3.6130 34 1 1.7691 -1.9435 3.6902 35 1 1.3585 1.9174 4.7522 36 1 2.8945 4.8799 4.8880 37 1 3.0767 -0.2837 6.6829 38 1 2.3985 -1.8799 6.1417 39 1 0.4395 -1.1850 7.4401 40 1 0.8508 0.5740 7.2452 41 1 -0.0259 -1.4355 5.0480 42 1 -0.3669 0.3467 5.1306 43 1 1.0855 -2.5610 -0.7327 44 1 1.8976 -3.7208 -2.7457 45 1 3.9106 -0.1659 -3.9833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484664568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:46 Heat of formation + Delta-G solvation = -91.093863 kcal Electronic energy + Delta-G solvation = -29596.933861 eV Core-core repulsion = 25250.412345 eV Total energy + Delta-G solvation = -4346.521517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.11965 -50.03599 -41.31374 -40.26391 -39.29641 -35.41811 -35.19556 -34.96662 -31.91137 -31.81731 -30.28898 -28.58304 -26.67954 -25.91885 -25.49335 -24.23005 -23.54605 -22.57302 -20.97966 -19.67272 -19.31394 -19.09908 -18.58546 -17.93622 -17.31141 -17.01096 -16.82803 -16.71636 -16.36866 -16.25345 -16.03762 -15.86545 -15.54708 -15.46692 -15.16035 -14.98761 -14.72607 -14.20710 -13.99573 -13.82094 -13.58821 -13.31982 -13.03150 -12.98952 -12.97050 -12.92951 -12.75539 -12.52914 -12.25958 -12.15812 -12.11339 -11.97889 -11.61504 -11.41602 -10.97643 -10.84415 -10.65060 -10.07735 -9.87918 -9.66802 -8.98330 -7.94289 -5.20389 -0.13175 0.00188 1.42730 1.45515 1.50985 1.68832 2.17113 2.49310 2.56170 2.81367 3.29154 3.37887 3.43287 3.53303 3.77330 3.79393 3.84218 3.94112 4.00846 4.08865 4.13905 4.15205 4.25568 4.28587 4.64831 4.70112 4.78118 4.85949 4.86480 4.86883 4.91106 4.93369 4.94361 5.01371 5.03191 5.16060 5.21173 5.27057 5.35463 5.44294 5.51944 5.67660 5.72336 5.75163 6.30434 6.67876 7.31153 7.37163 8.10633 8.34608 9.27807 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012084 B = 0.003341 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.519387 B = 8377.564972 C = 9764.263365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 H 0.099 0.901 4 C 0.514 3.486 5 O -0.579 6.579 6 N -0.695 5.695 7 C 0.129 3.871 8 C 0.158 3.842 9 N -0.703 5.703 10 C -0.217 4.217 11 H 0.061 0.939 12 C -0.061 4.061 13 N -0.958 5.958 14 Si 0.949 3.051 15 H -0.296 1.296 16 H -0.295 1.295 17 H -0.277 1.277 18 C -0.151 4.151 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.031 4.031 23 C -0.155 4.155 24 C 0.120 3.880 25 F -0.134 7.134 26 C -0.195 4.195 27 C 0.114 3.886 28 F -0.140 7.140 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.407 0.593 33 H 0.029 0.971 34 H 0.077 0.923 35 H 0.379 0.621 36 H 0.249 0.751 37 H 0.042 0.958 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.153 0.847 44 H 0.169 0.831 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.884 -13.142 -12.038 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.093 4.093 3 H 0.117 0.883 4 C 0.301 3.699 5 O -0.460 6.460 6 N -0.344 5.344 7 C 0.003 3.997 8 C 0.067 3.933 9 N -0.343 5.343 10 C -0.349 4.349 11 H 0.079 0.921 12 C -0.254 4.254 13 N -0.609 5.609 14 Si 0.781 3.219 15 H -0.223 1.223 16 H -0.222 1.222 17 H -0.203 1.203 18 C -0.191 4.191 19 C -0.160 4.160 20 C -0.162 4.162 21 C -0.115 4.115 22 C -0.049 4.049 23 C -0.173 4.173 24 C 0.100 3.900 25 F -0.113 7.113 26 C -0.214 4.214 27 C 0.095 3.905 28 F -0.119 7.119 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.243 0.757 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.212 0.788 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.127 0.873 42 H 0.085 0.915 43 H 0.171 0.829 44 H 0.186 0.814 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.178 -13.784 -12.087 20.074 hybrid contribution 1.388 1.777 0.009 2.255 sum -6.790 -12.007 -12.077 18.334 Atomic orbital electron populations 1.21797 0.88823 1.04106 1.04277 1.20206 1.00284 0.99805 0.89018 0.88267 1.20674 0.79810 0.84278 0.85173 1.90648 1.39629 1.28409 1.87289 1.45705 1.52289 1.31572 1.04841 1.21687 0.97651 0.95399 0.84977 1.21127 0.96225 0.84552 0.91428 1.42076 1.04144 1.00775 1.87326 1.19195 0.85435 0.90310 1.39970 0.92130 1.25220 0.99588 0.96391 1.04197 1.69740 1.31018 1.00545 1.59595 0.85500 0.82062 0.77420 0.76958 1.22342 1.22151 1.20264 1.23315 0.97753 1.00310 0.97685 1.22537 0.96003 1.00950 0.96514 1.23126 0.94431 1.02636 0.95996 1.19603 1.00235 0.95997 0.95688 1.20832 0.96791 0.91715 0.95514 1.21441 0.99349 1.02558 0.93998 1.17371 0.97423 0.90219 0.84975 1.91519 1.87477 1.81476 1.50815 1.21080 1.05841 0.95006 0.99512 1.17332 0.98289 0.79082 0.95829 1.91505 1.91053 1.34546 1.94748 0.89898 0.90451 0.90593 0.75734 0.95269 0.90462 0.78784 0.94175 0.93864 0.88751 0.89722 0.92476 0.87347 0.91534 0.82923 0.81397 0.82249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.90 71.98 0.64 -1.72 16 2 C -0.07 -1.84 2.88 -12.29 -0.04 -1.88 16 3 H 0.10 2.80 7.13 -2.38 -0.02 2.78 16 4 C 0.51 16.37 7.02 87.66 0.62 16.98 16 5 O -0.58 -21.70 15.09 -3.02 -0.05 -21.75 16 6 N -0.70 -22.07 5.28 -463.07 -2.45 -24.51 16 7 C 0.13 4.33 5.06 86.38 0.44 4.76 16 8 C 0.16 5.37 0.91 4.13 0.00 5.37 16 9 N -0.70 -31.01 4.56 -300.97 -1.37 -32.38 16 10 C -0.22 -11.25 9.24 84.04 0.78 -10.48 16 11 H 0.06 3.22 7.83 -2.91 -0.02 3.19 16 12 C -0.06 -3.34 5.50 84.86 0.47 -2.88 16 13 N -0.96 -55.18 13.07 21.65 0.28 -54.90 16 14 Si 0.95 45.98 29.55 68.60 2.03 48.01 16 15 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 16 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 C -0.15 -4.84 7.27 31.12 0.23 -4.62 16 19 C -0.12 -3.46 7.99 31.09 0.25 -3.21 16 20 C -0.12 -3.26 7.36 31.09 0.23 -3.04 16 21 C -0.11 -2.86 4.41 -19.82 -0.09 -2.95 16 22 C -0.03 -0.65 7.92 22.26 0.18 -0.47 16 23 C -0.15 -2.90 10.03 22.32 0.22 -2.68 16 24 C 0.12 2.51 7.30 22.37 0.16 2.67 16 25 F -0.13 -2.80 17.27 44.97 0.78 -2.02 16 26 C -0.19 -4.39 10.01 22.36 0.22 -4.16 16 27 C 0.11 2.99 7.24 22.37 0.16 3.15 16 28 F -0.14 -4.09 16.19 44.97 0.73 -3.36 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.17 7.40 -2.39 -0.02 1.15 16 31 H 0.08 1.29 7.57 -2.39 -0.02 1.27 16 32 H 0.41 12.52 7.52 -92.71 -0.70 11.82 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 2.24 7.94 -2.39 -0.02 2.22 16 35 H 0.38 17.83 7.89 -92.70 -0.73 17.10 16 36 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 37 H 0.04 1.66 7.79 -2.39 -0.02 1.64 16 38 H 0.09 2.52 8.10 -2.39 -0.02 2.51 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.11 2.23 7.96 -2.39 -0.02 2.21 16 42 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 43 H 0.15 2.83 7.51 -2.91 -0.02 2.81 16 44 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -64.62 381.10 4.02 -60.60 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.40 Total: 35.46 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 4.47 Total: -5.13 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -3.54 Total: -111.79 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 1.50 Total: -5.39 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -64.62 4.02 -60.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484664568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.496 kcal (2) G-P(sol) polarization free energy of solvation -64.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds