Wall clock time and date at job start Tue Mar 31 2020 21:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 5 5 O 1.21279 * 120.00113 * 120.00322 * 4 2 1 6 6 N 1.34784 * 119.99961 * 300.00090 * 4 2 1 7 7 C 1.46494 * 119.99635 * 180.02562 * 6 4 2 8 8 C 1.53784 * 113.61384 * 254.13439 * 7 6 4 9 9 C 1.53958 * 87.02152 * 220.04933 * 8 7 6 10 10 C 1.53004 * 113.66316 * 139.93193 * 9 8 7 11 11 N 1.46500 * 109.47028 * 87.44235 * 10 9 8 12 12 C 1.36940 * 119.99974 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99574 * 0.02562 * 12 11 10 14 14 C 1.38809 * 120.00072 * 179.97438 * 12 11 10 15 15 N 1.31626 * 120.00031 * 0.02562 * 14 12 11 16 16 Si 1.86790 * 120.00170 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47183 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47040 * 120.00133 * 16 14 12 19 19 H 1.48497 * 109.47867 * 240.00486 * 16 14 12 20 20 C 1.53779 * 87.10895 * 25.36471 * 9 8 7 21 21 C 1.50697 * 109.47070 * 240.00003 * 2 1 3 22 22 C 1.38228 * 119.98705 * 299.99937 * 21 2 1 23 23 C 1.38190 * 120.04785 * 180.02562 * 22 21 2 24 24 C 1.38496 * 120.02445 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.01004 * 179.97438 * 24 23 22 26 26 C 1.38393 * 119.97798 * 0.02562 * 24 23 22 27 27 C 1.38448 * 119.94807 * 359.76821 * 26 24 23 28 28 F 1.35097 * 120.01288 * 180.22578 * 27 26 24 29 29 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 30 30 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 31 31 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 32 32 H 0.96995 * 120.00015 * 359.72695 * 6 4 2 33 33 H 1.08999 * 112.85608 * 25.33506 * 7 6 4 34 34 H 1.08999 * 113.61705 * 334.57508 * 8 7 6 35 35 H 1.09004 * 113.61473 * 105.47079 * 8 7 6 36 36 H 1.08997 * 113.61472 * 270.80349 * 9 8 7 37 37 H 1.08999 * 109.46948 * 207.44127 * 10 9 8 38 38 H 1.09003 * 109.47544 * 327.44279 * 10 9 8 39 39 H 0.97001 * 120.00042 * 0.02562 * 11 10 9 40 40 H 0.96998 * 119.99768 * 179.97438 * 15 14 12 41 41 H 1.09004 * 113.61387 * 220.08890 * 20 9 8 42 42 H 1.09002 * 113.69178 * 89.19449 * 20 9 8 43 43 H 1.08000 * 119.97700 * 359.97438 * 22 21 2 44 44 H 1.07995 * 119.98874 * 180.02562 * 23 22 21 45 45 H 1.07996 * 120.02506 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6507 8 6 1.1130 -1.7567 4.3763 9 6 1.7320 -1.2558 5.6940 10 6 0.6964 -0.8925 6.7600 11 7 0.3558 -2.0869 7.5370 12 6 -0.5569 -2.0045 8.5545 13 1 -1.0260 -1.0591 8.7838 14 6 -0.8800 -3.1362 9.2905 15 7 -0.3086 -4.2885 9.0106 16 14 -2.1245 -3.0237 10.6789 17 1 -2.6171 -1.6271 10.7901 18 1 -3.2664 -3.9297 10.3947 19 1 -1.4801 -3.4248 11.9552 20 6 2.2495 -0.0448 4.8999 21 6 2.0323 -0.7104 -1.2304 22 6 1.6982 -2.0338 -1.4489 23 6 2.1586 -2.6866 -2.5765 24 6 2.9549 -2.0152 -3.4894 25 9 3.4053 -2.6539 -4.5914 26 6 3.2901 -0.6902 -3.2717 27 6 2.8248 -0.0360 -2.1437 28 9 3.1473 1.2588 -1.9323 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.1523 0.5410 2.5436 33 1 3.1156 -1.4965 3.4722 34 1 0.1008 -1.3915 4.2028 35 1 1.2065 -2.8329 4.2302 36 1 2.5251 -1.8987 6.0759 37 1 1.1092 -0.1328 7.4236 38 1 -0.2010 -0.5048 6.2777 39 1 0.7774 -2.9359 7.3313 40 1 -0.5342 -5.0792 9.5251 41 1 3.2593 0.2591 5.1759 42 1 1.5496 0.7902 4.8691 43 1 1.0777 -2.5582 -0.7374 44 1 1.8967 -3.7204 -2.7465 45 1 3.9106 -0.1659 -3.9832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485109991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:21 Heat of formation + Delta-G solvation = -98.132092 kcal Electronic energy + Delta-G solvation = -28186.059608 eV Core-core repulsion = 23839.232891 eV Total energy + Delta-G solvation = -4346.826717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.10829 -50.04877 -41.48769 -40.19783 -39.11649 -36.32428 -35.31308 -34.34643 -32.75292 -31.84149 -30.13684 -28.43716 -26.61199 -26.03364 -25.12851 -24.25325 -23.62108 -22.32644 -21.28012 -20.49385 -19.32635 -19.05172 -18.55332 -17.81207 -17.53877 -17.00933 -16.81997 -16.71313 -16.37224 -16.35929 -16.18479 -15.94356 -15.53087 -15.34538 -15.09956 -15.02527 -14.71654 -14.55098 -13.85534 -13.84469 -13.42861 -13.33991 -13.19916 -13.01457 -12.99488 -12.90723 -12.79487 -12.72078 -12.27169 -12.22375 -12.10110 -12.04248 -11.83841 -11.37102 -11.27658 -10.89899 -10.74906 -10.09010 -9.97967 -9.68100 -8.97115 -7.94256 -5.22803 -0.14785 -0.01094 1.47735 1.48678 1.58783 1.59446 2.07705 2.43794 2.57023 2.79591 3.26374 3.38893 3.40159 3.50783 3.59880 3.62811 3.77115 3.90727 3.92203 3.95839 4.06973 4.13674 4.27199 4.32863 4.58089 4.66278 4.68252 4.76569 4.83587 4.84743 4.85310 4.90954 4.92401 4.98199 5.02069 5.04156 5.16274 5.20049 5.25999 5.28336 5.44472 5.51893 5.67323 5.70832 6.28550 6.58002 7.25396 7.34148 8.12691 8.34164 9.29699 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023209 B = 0.001852 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.162839 B =15111.084356 C =15607.459034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 H 0.126 0.874 4 C 0.517 3.483 5 O -0.574 6.574 6 N -0.702 5.702 7 C 0.131 3.869 8 C -0.137 4.137 9 C -0.116 4.116 10 C 0.164 3.836 11 N -0.747 5.747 12 C -0.242 4.242 13 H 0.078 0.922 14 C -0.081 4.081 15 N -0.971 5.971 16 Si 0.974 3.026 17 H -0.264 1.264 18 H -0.294 1.294 19 H -0.294 1.294 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.036 4.036 23 C -0.162 4.162 24 C 0.118 3.882 25 F -0.137 7.137 26 C -0.194 4.194 27 C 0.125 3.875 28 F -0.131 7.131 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.417 0.583 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.021 0.979 38 H 0.027 0.973 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.144 0.856 44 H 0.158 0.842 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 13.166 -27.316 30.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 H 0.143 0.857 4 C 0.304 3.696 5 O -0.453 6.453 6 N -0.353 5.353 7 C 0.026 3.974 8 C -0.176 4.176 9 C -0.135 4.135 10 C 0.038 3.962 11 N -0.390 5.390 12 C -0.374 4.374 13 H 0.096 0.904 14 C -0.273 4.273 15 N -0.623 5.623 16 Si 0.804 3.196 17 H -0.188 1.188 18 H -0.221 1.221 19 H -0.222 1.222 20 C -0.153 4.153 21 C -0.117 4.117 22 C -0.054 4.054 23 C -0.180 4.180 24 C 0.099 3.901 25 F -0.115 7.115 26 C -0.213 4.213 27 C 0.106 3.894 28 F -0.110 7.110 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.255 0.745 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.039 0.961 38 H 0.044 0.956 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.162 0.838 44 H 0.176 0.824 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.848 12.632 -27.327 30.493 hybrid contribution -0.335 -0.464 0.775 0.963 sum 4.514 12.168 -26.551 29.554 Atomic orbital electron populations 1.21856 0.89385 1.03644 1.04815 1.20248 0.99645 1.00660 0.88203 0.85651 1.20852 0.79323 0.84091 0.85377 1.90720 1.39436 1.27969 1.87213 1.45861 1.53087 1.31876 1.04453 1.22323 0.97270 0.94777 0.83051 1.23453 0.99365 0.99609 0.95182 1.22471 0.98065 0.99020 0.93930 1.20789 0.95000 0.88847 0.91553 1.42633 1.50182 1.07997 1.38149 1.19715 1.15179 0.94888 1.07657 0.90431 1.25613 1.03129 0.95470 1.03071 1.69838 1.48239 0.99848 1.44342 0.85052 0.78198 0.77740 0.78648 1.18795 1.22110 1.22175 1.23234 1.03018 0.96613 0.92437 1.19593 1.00332 0.95521 0.96284 1.20808 0.96793 0.92486 0.95349 1.21415 0.99713 1.02419 0.94498 1.17414 0.97340 0.90565 0.84811 1.91522 1.87436 1.81631 1.50934 1.21114 1.05733 0.94595 0.99880 1.17120 0.97878 0.79096 0.95306 1.91502 1.91036 1.33753 1.94680 0.89542 0.89708 0.92024 0.74538 0.88515 0.89363 0.93345 0.90359 0.96104 0.95557 0.79658 0.94097 0.89608 0.87375 0.83835 0.82395 0.81947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.90 71.98 0.64 -0.66 16 2 C -0.07 -0.93 2.88 -12.29 -0.04 -0.96 16 3 H 0.13 1.39 7.12 -2.39 -0.02 1.37 16 4 C 0.52 10.46 7.02 87.66 0.62 11.08 16 5 O -0.57 -16.68 14.73 -3.03 -0.04 -16.72 16 6 N -0.70 -11.94 5.25 -440.03 -2.31 -14.25 16 7 C 0.13 2.91 4.21 45.52 0.19 3.10 16 8 C -0.14 -3.80 7.45 31.18 0.23 -3.57 16 9 C -0.12 -3.44 3.75 -10.21 -0.04 -3.48 16 10 C 0.16 6.22 6.10 86.38 0.53 6.75 16 11 N -0.75 -37.93 5.60 -343.45 -1.92 -39.85 16 12 C -0.24 -13.53 9.99 84.03 0.84 -12.69 16 13 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 14 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 15 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 16 Si 0.97 46.14 29.55 68.60 2.03 48.16 16 17 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 19 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 20 C -0.11 -2.32 7.39 31.12 0.23 -2.09 16 21 C -0.12 -1.97 4.40 -19.82 -0.09 -2.06 16 22 C -0.04 -0.62 7.93 22.26 0.18 -0.44 16 23 C -0.16 -2.59 10.03 22.32 0.22 -2.36 16 24 C 0.12 2.00 7.30 22.37 0.16 2.17 16 25 F -0.14 -2.45 17.27 44.97 0.78 -1.67 16 26 C -0.19 -3.09 10.01 22.36 0.22 -2.87 16 27 C 0.13 2.14 7.25 22.37 0.16 2.30 16 28 F -0.13 -2.22 16.19 44.97 0.73 -1.49 16 29 H 0.09 0.54 7.57 -2.39 -0.02 0.53 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.67 7.39 -2.38 -0.02 0.66 16 32 H 0.42 4.36 8.13 -92.71 -0.75 3.61 16 33 H 0.10 2.53 7.50 -2.39 -0.02 2.51 16 34 H 0.09 2.36 7.90 -2.39 -0.02 2.34 16 35 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.03 0.97 7.85 -2.39 -0.02 0.95 16 39 H 0.37 20.36 7.67 -92.71 -0.71 19.64 16 40 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.11 1.75 8.07 -2.39 -0.02 1.73 16 43 H 0.14 2.37 7.51 -2.91 -0.02 2.34 16 44 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 45 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -71.85 382.77 3.63 -68.22 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -0.43 Total: 27.50 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 4.53 Total: -10.00 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -3.95 Total: -113.99 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.04 Total: -16.72 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 1.50 Total: -3.17 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -71.85 3.63 -68.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485109991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.912 kcal (2) G-P(sol) polarization free energy of solvation -71.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds