Wall clock time and date at job start Tue Mar 31 2020 21:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47026 * 2 1 4 4 C 1.50696 * 109.47294 * 239.99859 * 2 1 3 5 5 O 1.21286 * 119.99787 * 240.00023 * 4 2 1 6 6 N 1.34773 * 120.00224 * 59.99805 * 4 2 1 7 7 C 1.46500 * 120.00076 * 180.02562 * 6 4 2 8 8 C 1.53785 * 113.60895 * 254.13412 * 7 6 4 9 9 C 1.54053 * 86.98706 * 270.83727 * 8 7 6 10 10 C 1.53002 * 113.62057 * 220.02379 * 9 8 7 11 11 N 1.46503 * 109.47130 * 272.49600 * 10 9 8 12 12 C 1.36926 * 120.00188 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00040 * 0.02562 * 12 11 10 14 14 C 1.38813 * 120.00378 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99379 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00082 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46926 * 90.00516 * 16 14 12 18 18 H 1.48498 * 109.47086 * 209.99749 * 16 14 12 19 19 H 1.48493 * 109.47305 * 330.00202 * 16 14 12 20 20 C 1.53778 * 87.07685 * 334.57130 * 9 8 7 21 21 C 1.50696 * 109.47033 * 119.99609 * 2 1 3 22 22 C 1.38230 * 119.98825 * 59.97940 * 21 2 1 23 23 C 1.38186 * 120.05312 * 179.97438 * 22 21 2 24 24 C 1.38503 * 120.02165 * 0.03870 * 23 22 21 25 25 F 1.35096 * 120.00694 * 180.02562 * 24 23 22 26 26 C 1.38390 * 119.97648 * 359.97438 * 24 23 22 27 27 C 1.38445 * 119.95081 * 359.97438 * 26 24 23 28 28 F 1.35101 * 120.01390 * 179.72859 * 27 26 24 29 29 H 1.09001 * 109.47150 * 60.00569 * 1 2 3 30 30 H 1.09002 * 109.47480 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47378 * 300.00266 * 1 2 3 32 32 H 0.97002 * 120.00058 * 0.02562 * 6 4 2 33 33 H 1.08997 * 112.85252 * 25.32823 * 7 6 4 34 34 H 1.09000 * 113.61795 * 25.43230 * 8 7 6 35 35 H 1.09004 * 113.61099 * 156.33660 * 8 7 6 36 36 H 1.08996 * 113.68647 * 89.12631 * 9 8 7 37 37 H 1.09001 * 109.47083 * 32.49623 * 10 9 8 38 38 H 1.08997 * 109.47129 * 152.49751 * 10 9 8 39 39 H 0.97002 * 119.99633 * 0.02562 * 11 10 9 40 40 H 0.97004 * 119.99001 * 179.97438 * 15 14 12 41 41 H 1.09001 * 113.61293 * 270.88020 * 20 9 8 42 42 H 1.08997 * 113.69050 * 139.98720 * 20 9 8 43 43 H 1.08000 * 119.97299 * 359.97438 * 22 21 2 44 44 H 1.07994 * 119.99243 * 180.02562 * 23 22 21 45 45 H 1.08000 * 120.02409 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 2.1947 -0.9410 -3.6506 8 6 3.3253 -0.1925 -4.3762 9 6 2.2241 0.5283 -5.1769 10 6 2.5649 0.7154 -6.6567 11 7 3.3123 1.9632 -6.8317 12 6 3.7274 2.3434 -8.0799 13 1 3.5035 1.7235 -8.9356 14 6 4.4351 3.5259 -8.2459 15 7 4.7076 4.2815 -7.2032 16 14 5.0020 4.0441 -9.9487 17 1 3.9503 4.8743 -10.5892 18 1 6.2545 4.8337 -9.8345 19 1 5.2517 2.8366 -10.7760 20 6 1.3325 -0.6936 -4.8998 21 6 2.0323 -0.7103 1.2305 22 6 1.6978 -2.0336 1.4493 23 6 2.1581 -2.6864 2.5769 24 6 2.9546 -2.0150 3.4897 25 9 3.4049 -2.6536 4.5917 26 6 3.2899 -0.6901 3.2718 27 6 2.8290 -0.0374 2.1412 28 9 3.1510 1.2576 1.9300 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.1494 0.5388 -2.5436 33 1 2.4126 -1.9940 -3.4720 34 1 3.8985 0.4688 -3.7264 35 1 3.9561 -0.8394 -4.9860 36 1 1.8683 1.4443 -4.7053 37 1 3.1721 -0.1228 -6.9985 38 1 1.6445 0.7585 -7.2388 39 1 3.5131 2.5201 -6.0632 40 1 5.2025 5.1078 -7.3192 41 1 1.4195 -1.4772 -5.6525 42 1 0.2976 -0.4381 -4.6724 43 1 1.0763 -2.5577 0.7384 44 1 1.8966 -3.7203 2.7467 45 1 3.9113 -0.1660 3.9828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485109992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:26 Heat of formation + Delta-G solvation = -76.074433 kcal Electronic energy + Delta-G solvation = -28352.740877 eV Core-core repulsion = 24006.870652 eV Total energy + Delta-G solvation = -4345.870225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.35923 -49.33739 -40.67318 -39.35497 -38.14108 -34.61845 -34.48706 -33.02895 -31.18467 -30.84310 -29.43940 -26.89118 -25.53668 -25.22347 -23.71311 -23.38612 -22.54724 -21.41979 -20.41214 -19.13390 -18.60298 -17.87921 -17.10159 -17.00842 -16.48645 -16.27543 -16.02335 -15.71939 -15.62306 -15.15557 -14.85562 -14.75102 -14.48191 -14.34206 -14.12083 -13.78415 -13.37640 -13.26847 -13.13482 -12.83627 -12.72523 -12.41246 -12.37133 -12.15256 -12.08740 -11.70299 -11.63120 -11.53384 -11.03916 -10.83102 -10.50004 -10.36396 -10.09769 -9.95334 -9.84024 -9.61621 -9.41158 -9.05493 -8.98391 -8.84428 -6.90137 -5.75747 -3.03910 0.54578 0.66817 2.44368 2.81594 3.15412 3.43738 3.48793 3.49647 3.50716 3.94290 4.07323 4.16987 4.42176 4.54017 4.57845 4.63659 4.69425 4.74906 4.81132 4.88156 5.08883 5.11560 5.18836 5.33511 5.42641 5.46792 5.53443 5.58397 5.61421 5.70155 5.72031 5.83420 5.87136 5.91565 5.99348 6.09409 6.22237 6.29482 6.37699 6.41324 6.60592 6.77539 6.92653 7.36335 7.70440 8.06050 8.43536 9.54460 10.13611 10.47933 11.47247 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019960 B = 0.001993 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.439408 B =14048.564913 C =14687.459959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 H 0.113 0.887 4 C 0.522 3.478 5 O -0.532 6.532 6 N -0.705 5.705 7 C 0.116 3.884 8 C -0.139 4.139 9 C -0.113 4.113 10 C 0.162 3.838 11 N -0.732 5.732 12 C -0.239 4.239 13 H 0.070 0.930 14 C -0.016 4.016 15 N -0.934 5.934 16 Si 0.907 3.093 17 H -0.290 1.290 18 H -0.291 1.291 19 H -0.282 1.282 20 C -0.137 4.137 21 C -0.109 4.109 22 C -0.028 4.028 23 C -0.164 4.164 24 C 0.129 3.871 25 F -0.133 7.133 26 C -0.194 4.194 27 C 0.138 3.862 28 F -0.128 7.128 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.402 0.598 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.020 0.980 38 H 0.018 0.982 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.268 -13.053 22.407 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.096 4.096 3 H 0.131 0.869 4 C 0.307 3.693 5 O -0.409 6.409 6 N -0.356 5.356 7 C 0.011 3.989 8 C -0.178 4.178 9 C -0.132 4.132 10 C 0.035 3.965 11 N -0.376 5.376 12 C -0.370 4.370 13 H 0.088 0.912 14 C -0.212 4.212 15 N -0.583 5.583 16 Si 0.738 3.262 17 H -0.218 1.218 18 H -0.218 1.218 19 H -0.208 1.208 20 C -0.176 4.176 21 C -0.110 4.110 22 C -0.046 4.046 23 C -0.183 4.183 24 C 0.110 3.890 25 F -0.111 7.111 26 C -0.214 4.214 27 C 0.119 3.881 28 F -0.106 7.106 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.237 0.763 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.113 0.887 42 H 0.088 0.912 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.693 -13.749 22.332 28.321 hybrid contribution 0.489 1.205 -0.603 1.433 sum -10.204 -12.544 21.729 27.085 Atomic orbital electron populations 1.21814 0.91228 1.03279 1.03484 1.20229 0.98273 1.00957 0.90169 0.86892 1.20287 0.80149 0.84553 0.84302 1.90725 1.37302 1.26251 1.86575 1.45653 1.53210 1.31754 1.04979 1.21954 0.96187 0.97142 0.83635 1.23459 0.96483 0.99323 0.98500 1.22804 0.95898 0.96694 0.97762 1.20639 0.94427 0.90026 0.91458 1.42345 1.65760 1.22085 1.07389 1.19242 1.28177 1.03447 0.86122 0.91242 1.24748 1.01448 0.97710 0.97258 1.69664 1.45486 1.14923 1.28214 0.86186 0.77934 0.78219 0.83841 1.21756 1.21782 1.20783 1.23299 0.98309 0.99436 0.96523 1.19398 1.00376 0.95339 0.95934 1.20663 0.96566 0.92256 0.95087 1.21181 1.00519 1.01589 0.94981 1.17301 0.96824 0.90246 0.84669 1.91531 1.87329 1.81513 1.50750 1.20958 1.05986 0.94695 0.99731 1.17080 0.97133 0.79151 0.94768 1.91535 1.90904 1.33548 1.94600 0.91090 0.91573 0.90954 0.76314 0.88353 0.91328 0.89134 0.89429 0.96232 0.96421 0.78344 0.93556 0.88711 0.91246 0.84084 0.83943 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.90 37.16 0.33 -0.47 16 2 C -0.07 -0.64 2.88 -92.93 -0.27 -0.91 16 3 H 0.11 0.94 7.12 -51.93 -0.37 0.57 16 4 C 0.52 5.86 7.02 -10.99 -0.08 5.78 16 5 O -0.53 -7.83 14.73 5.55 0.08 -7.75 16 6 N -0.71 -7.25 5.16 -53.02 -0.27 -7.52 16 7 C 0.12 1.38 4.30 -67.11 -0.29 1.09 16 8 C -0.14 -2.03 7.45 -25.77 -0.19 -2.22 16 9 C -0.11 -1.69 3.65 -89.66 -0.33 -2.01 16 10 C 0.16 3.18 6.10 -4.04 -0.02 3.15 16 11 N -0.73 -18.52 5.60 -59.91 -0.34 -18.86 16 12 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 13 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 14 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 15 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 16 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.14 -1.55 7.38 -25.92 -0.19 -1.74 16 21 C -0.11 -1.03 4.40 -104.55 -0.46 -1.49 16 22 C -0.03 -0.24 7.92 -39.60 -0.31 -0.55 16 23 C -0.16 -1.32 10.03 -39.50 -0.40 -1.72 16 24 C 0.13 1.16 7.30 -39.43 -0.29 0.87 16 25 F -0.13 -1.24 17.27 2.25 0.04 -1.21 16 26 C -0.19 -1.75 10.01 -39.45 -0.39 -2.14 16 27 C 0.14 1.37 7.25 -39.43 -0.29 1.08 16 28 F -0.13 -1.35 16.19 2.25 0.04 -1.32 16 29 H 0.07 0.33 7.56 -51.93 -0.39 -0.06 16 30 H 0.07 0.36 7.39 -51.93 -0.38 -0.03 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.40 3.31 8.12 -40.82 -0.33 2.97 16 33 H 0.10 1.24 7.50 -51.93 -0.39 0.85 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.36 7.90 -51.93 -0.41 0.95 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.02 0.39 7.85 -51.93 -0.41 -0.01 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 40 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.14 1.05 7.51 -52.49 -0.39 0.66 16 44 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -33.31 382.64 -8.73 -42.03 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.32 Total: 7.76 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -3.42 Total: -8.71 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.12 Total: -54.11 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.08 Total: -7.75 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.08 Total: -2.52 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.31 -8.73 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485109992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.040 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds