Wall clock time and date at job start Tue Mar 31 2020 21:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47026 * 2 1 4 4 C 1.50696 * 109.47294 * 239.99859 * 2 1 3 5 5 O 1.21286 * 119.99787 * 240.00023 * 4 2 1 6 6 N 1.34773 * 120.00224 * 59.99805 * 4 2 1 7 7 C 1.46500 * 120.00076 * 180.02562 * 6 4 2 8 8 C 1.53785 * 113.60895 * 254.13412 * 7 6 4 9 9 C 1.54053 * 86.98706 * 270.83727 * 8 7 6 10 10 C 1.53002 * 113.62057 * 220.02379 * 9 8 7 11 11 N 1.46503 * 109.47130 * 272.49600 * 10 9 8 12 12 C 1.36926 * 120.00188 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00040 * 0.02562 * 12 11 10 14 14 C 1.38813 * 120.00378 * 179.97438 * 12 11 10 15 15 N 1.31619 * 119.99379 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00082 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46926 * 90.00516 * 16 14 12 18 18 H 1.48498 * 109.47086 * 209.99749 * 16 14 12 19 19 H 1.48493 * 109.47305 * 330.00202 * 16 14 12 20 20 C 1.53778 * 87.07685 * 334.57130 * 9 8 7 21 21 C 1.50696 * 109.47033 * 119.99609 * 2 1 3 22 22 C 1.38230 * 119.98825 * 59.97940 * 21 2 1 23 23 C 1.38186 * 120.05312 * 179.97438 * 22 21 2 24 24 C 1.38503 * 120.02165 * 0.03870 * 23 22 21 25 25 F 1.35096 * 120.00694 * 180.02562 * 24 23 22 26 26 C 1.38390 * 119.97648 * 359.97438 * 24 23 22 27 27 C 1.38445 * 119.95081 * 359.97438 * 26 24 23 28 28 F 1.35101 * 120.01390 * 179.72859 * 27 26 24 29 29 H 1.09001 * 109.47150 * 60.00569 * 1 2 3 30 30 H 1.09002 * 109.47480 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47378 * 300.00266 * 1 2 3 32 32 H 0.97002 * 120.00058 * 0.02562 * 6 4 2 33 33 H 1.08997 * 112.85252 * 25.32823 * 7 6 4 34 34 H 1.09000 * 113.61795 * 25.43230 * 8 7 6 35 35 H 1.09004 * 113.61099 * 156.33660 * 8 7 6 36 36 H 1.08996 * 113.68647 * 89.12631 * 9 8 7 37 37 H 1.09001 * 109.47083 * 32.49623 * 10 9 8 38 38 H 1.08997 * 109.47129 * 152.49751 * 10 9 8 39 39 H 0.97002 * 119.99633 * 0.02562 * 11 10 9 40 40 H 0.97004 * 119.99001 * 179.97438 * 15 14 12 41 41 H 1.09001 * 113.61293 * 270.88020 * 20 9 8 42 42 H 1.08997 * 113.69050 * 139.98720 * 20 9 8 43 43 H 1.08000 * 119.97299 * 359.97438 * 22 21 2 44 44 H 1.07994 * 119.99243 * 180.02562 * 23 22 21 45 45 H 1.08000 * 120.02409 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 2.1947 -0.9410 -3.6506 8 6 3.3253 -0.1925 -4.3762 9 6 2.2241 0.5283 -5.1769 10 6 2.5649 0.7154 -6.6567 11 7 3.3123 1.9632 -6.8317 12 6 3.7274 2.3434 -8.0799 13 1 3.5035 1.7235 -8.9356 14 6 4.4351 3.5259 -8.2459 15 7 4.7076 4.2815 -7.2032 16 14 5.0020 4.0441 -9.9487 17 1 3.9503 4.8743 -10.5892 18 1 6.2545 4.8337 -9.8345 19 1 5.2517 2.8366 -10.7760 20 6 1.3325 -0.6936 -4.8998 21 6 2.0323 -0.7103 1.2305 22 6 1.6978 -2.0336 1.4493 23 6 2.1581 -2.6864 2.5769 24 6 2.9546 -2.0150 3.4897 25 9 3.4049 -2.6536 4.5917 26 6 3.2899 -0.6901 3.2718 27 6 2.8290 -0.0374 2.1412 28 9 3.1510 1.2576 1.9300 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.1494 0.5388 -2.5436 33 1 2.4126 -1.9940 -3.4720 34 1 3.8985 0.4688 -3.7264 35 1 3.9561 -0.8394 -4.9860 36 1 1.8683 1.4443 -4.7053 37 1 3.1721 -0.1228 -6.9985 38 1 1.6445 0.7585 -7.2388 39 1 3.5131 2.5201 -6.0632 40 1 5.2025 5.1078 -7.3192 41 1 1.4195 -1.4772 -5.6525 42 1 0.2976 -0.4381 -4.6724 43 1 1.0763 -2.5577 0.7384 44 1 1.8966 -3.7203 2.7467 45 1 3.9113 -0.1660 3.9828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485109992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:25 Heat of formation + Delta-G solvation = -96.030546 kcal Electronic energy + Delta-G solvation = -28353.606239 eV Core-core repulsion = 24006.870652 eV Total energy + Delta-G solvation = -4346.735587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.12080 -50.04579 -41.56048 -40.23597 -39.08873 -36.33499 -35.30208 -34.21716 -32.72828 -31.83663 -30.11349 -28.47377 -26.61371 -25.99973 -25.16242 -24.24846 -23.54258 -22.76711 -21.22067 -20.30522 -19.32002 -19.06029 -18.61791 -17.82411 -17.34902 -17.01487 -16.78241 -16.74266 -16.49382 -16.36857 -16.06423 -15.65052 -15.60916 -15.49344 -15.15500 -14.97837 -14.81067 -14.48665 -13.84122 -13.81138 -13.70855 -13.39131 -13.33110 -13.11322 -12.98941 -12.90076 -12.78030 -12.67713 -12.28526 -12.18378 -12.15303 -11.92455 -11.72297 -11.34122 -11.13497 -10.87158 -10.82280 -10.09148 -10.01268 -9.68207 -8.97785 -7.95386 -5.23454 -0.14550 -0.00657 1.46606 1.48426 1.56820 1.56958 2.03473 2.41833 2.55928 2.80461 3.26270 3.37700 3.40911 3.50971 3.60929 3.61802 3.75492 3.90762 3.95753 3.96834 4.08760 4.13198 4.27464 4.34189 4.58293 4.66812 4.76180 4.79180 4.85271 4.86097 4.86868 4.90408 4.93900 4.94357 5.00553 5.03321 5.16848 5.20006 5.27670 5.29329 5.38277 5.49393 5.69890 5.71298 6.27627 6.53280 7.21032 7.33420 8.11975 8.33823 9.28269 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019960 B = 0.001993 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.439408 B =14048.564913 C =14687.459959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 H 0.114 0.886 4 C 0.521 3.479 5 O -0.569 6.569 6 N -0.698 5.698 7 C 0.129 3.871 8 C -0.146 4.146 9 C -0.111 4.111 10 C 0.159 3.841 11 N -0.746 5.746 12 C -0.245 4.245 13 H 0.075 0.925 14 C -0.079 4.079 15 N -0.970 5.970 16 Si 0.974 3.026 17 H -0.285 1.285 18 H -0.296 1.296 19 H -0.270 1.270 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.032 4.032 23 C -0.158 4.158 24 C 0.118 3.882 25 F -0.136 7.136 26 C -0.197 4.197 27 C 0.119 3.881 28 F -0.136 7.136 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.414 0.586 33 H 0.096 0.904 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.019 0.981 38 H 0.023 0.977 39 H 0.373 0.627 40 H 0.251 0.749 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.153 0.847 44 H 0.165 0.835 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.035 -14.128 22.185 29.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.091 4.091 3 H 0.132 0.868 4 C 0.308 3.692 5 O -0.448 6.448 6 N -0.349 5.349 7 C 0.023 3.977 8 C -0.185 4.185 9 C -0.130 4.130 10 C 0.033 3.967 11 N -0.388 5.388 12 C -0.376 4.376 13 H 0.093 0.907 14 C -0.271 4.271 15 N -0.622 5.622 16 Si 0.803 3.197 17 H -0.212 1.212 18 H -0.223 1.223 19 H -0.195 1.195 20 C -0.152 4.152 21 C -0.118 4.118 22 C -0.050 4.050 23 C -0.177 4.177 24 C 0.099 3.901 25 F -0.115 7.115 26 C -0.216 4.216 27 C 0.100 3.900 28 F -0.115 7.115 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.251 0.749 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.036 0.964 38 H 0.041 0.959 39 H 0.204 0.796 40 H 0.059 0.941 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.171 0.829 44 H 0.182 0.818 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.504 -14.845 22.100 29.413 hybrid contribution 1.050 1.479 -0.517 1.886 sum -11.454 -13.366 21.583 27.851 Atomic orbital electron populations 1.21846 0.88760 1.04107 1.04696 1.20247 1.00213 1.00268 0.88394 0.86837 1.20746 0.79320 0.84056 0.85052 1.90708 1.38959 1.28036 1.87121 1.45595 1.52923 1.31965 1.04379 1.21740 0.94959 0.96638 0.84340 1.23483 0.96997 0.99348 0.98699 1.22738 0.97445 0.98307 0.94514 1.20846 0.93624 0.87484 0.94791 1.42591 1.66278 1.23748 1.06171 1.19666 1.27249 1.03318 0.87415 0.90686 1.25591 1.02397 0.98156 1.00987 1.69822 1.46751 1.15294 1.30283 0.85132 0.77042 0.77960 0.79594 1.21222 1.22309 1.19469 1.23202 0.98908 0.97248 0.95851 1.19602 1.00240 0.95861 0.96080 1.20846 0.96727 0.91991 0.95418 1.21447 0.99438 1.02516 0.94274 1.17428 0.97406 0.90360 0.84932 1.91520 1.87464 1.81538 1.50974 1.21107 1.05877 0.94936 0.99727 1.17256 0.98113 0.79087 0.95591 1.91507 1.91127 1.34120 1.94726 0.89683 0.90934 0.89981 0.74886 0.88582 0.93426 0.89936 0.89579 0.96351 0.95924 0.79593 0.94070 0.87662 0.88587 0.82899 0.81789 0.82361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.90 71.98 0.64 -0.59 16 2 C -0.07 -1.10 2.88 -12.29 -0.04 -1.14 16 3 H 0.11 1.78 7.12 -2.39 -0.02 1.77 16 4 C 0.52 11.07 7.02 87.66 0.62 11.69 16 5 O -0.57 -16.35 14.73 -3.05 -0.04 -16.39 16 6 N -0.70 -13.10 5.16 -440.03 -2.27 -15.37 16 7 C 0.13 2.85 4.30 45.52 0.20 3.04 16 8 C -0.15 -4.24 7.45 31.21 0.23 -4.01 16 9 C -0.11 -3.20 3.65 -10.17 -0.04 -3.23 16 10 C 0.16 6.10 6.10 86.38 0.53 6.63 16 11 N -0.75 -37.94 5.60 -343.45 -1.92 -39.86 16 12 C -0.24 -13.78 9.99 84.04 0.84 -12.94 16 13 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 14 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 15 N -0.97 -60.02 13.06 21.65 0.28 -59.74 16 16 Si 0.97 46.46 29.55 68.60 2.03 48.49 16 17 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 18 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 C -0.11 -2.24 7.38 31.12 0.23 -2.01 16 21 C -0.12 -2.09 4.40 -19.82 -0.09 -2.18 16 22 C -0.03 -0.50 7.92 22.26 0.18 -0.32 16 23 C -0.16 -2.33 10.03 22.32 0.22 -2.11 16 24 C 0.12 2.03 7.30 22.37 0.16 2.20 16 25 F -0.14 -2.46 17.27 44.97 0.78 -1.68 16 26 C -0.20 -3.50 10.01 22.36 0.22 -3.28 16 27 C 0.12 2.33 7.25 22.37 0.16 2.49 16 28 F -0.14 -2.91 16.19 44.97 0.73 -2.19 16 29 H 0.08 0.54 7.56 -2.39 -0.02 0.52 16 30 H 0.07 0.58 7.39 -2.39 -0.02 0.57 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.41 5.83 8.12 -92.71 -0.75 5.08 16 33 H 0.10 2.26 7.50 -2.39 -0.02 2.24 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 2.50 7.90 -2.38 -0.02 2.48 16 36 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.02 0.72 7.85 -2.39 -0.02 0.70 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.37 20.23 7.67 -92.71 -0.71 19.51 16 40 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 41 H 0.11 1.93 8.10 -2.39 -0.02 1.91 16 42 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.15 1.99 7.51 -2.91 -0.02 1.97 16 44 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 45 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -72.10 382.64 3.68 -68.41 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: -0.43 Total: 28.24 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 4.54 Total: -9.90 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -3.91 Total: -114.97 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.04 Total: -16.39 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 1.50 Total: -3.87 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -72.10 3.68 -68.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485109992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.617 kcal (2) G-P(sol) polarization free energy of solvation -72.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds