Wall clock time and date at job start Tue Mar 31 2020 21:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47190 * 2 1 4 4 C 1.50708 * 109.46951 * 120.00025 * 2 1 3 5 5 O 1.21279 * 120.00123 * 120.00083 * 4 2 1 6 6 N 1.34785 * 119.99625 * 299.99998 * 4 2 1 7 7 C 1.46496 * 119.99543 * 180.02562 * 6 4 2 8 8 H 1.09000 * 109.47337 * 35.00175 * 7 6 4 9 9 C 1.52998 * 109.47078 * 154.99826 * 7 6 4 10 10 N 1.46506 * 109.47237 * 304.99765 * 9 7 6 11 11 C 1.36939 * 120.00073 * 179.72302 * 10 9 7 12 12 H 1.08004 * 119.99859 * 0.02562 * 11 10 9 13 13 C 1.38805 * 119.99849 * 180.02562 * 11 10 9 14 14 N 1.31622 * 120.00455 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00168 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46615 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47374 * 119.99782 * 15 13 11 18 18 H 1.48495 * 109.47187 * 240.00172 * 15 13 11 19 19 C 1.52994 * 109.47150 * 274.99783 * 7 6 4 20 20 C 1.53011 * 117.50014 * 128.74789 * 19 7 6 21 21 C 1.53002 * 117.49791 * 60.08898 * 19 7 6 22 22 C 1.50700 * 109.46984 * 239.99699 * 2 1 3 23 23 C 1.38258 * 119.96627 * 299.72648 * 22 2 1 24 24 C 1.38210 * 120.06621 * 179.72798 * 23 22 2 25 25 C 1.38405 * 120.00392 * 0.54704 * 24 23 22 26 26 F 1.35103 * 120.03970 * 179.74829 * 25 24 23 27 27 C 1.38649 * 119.92730 * 359.72735 * 25 24 23 28 28 F 1.35100 * 120.03605 * 180.02562 * 27 25 24 29 29 C 1.38217 * 119.96119 * 120.00565 * 22 2 1 30 30 H 1.08998 * 109.47087 * 300.00252 * 1 2 3 31 31 H 1.08999 * 109.47306 * 60.00094 * 1 2 3 32 32 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99961 * 0.02562 * 6 4 2 34 34 H 1.09001 * 109.47671 * 185.00106 * 9 7 6 35 35 H 1.08998 * 109.47454 * 65.00103 * 9 7 6 36 36 H 0.97005 * 119.99811 * 0.02562 * 10 9 7 37 37 H 0.97000 * 120.00679 * 179.97438 * 14 13 11 38 38 H 1.09001 * 115.55265 * 274.41372 * 19 7 6 39 39 H 1.09000 * 117.49671 * 0.02562 * 20 19 7 40 40 H 1.08997 * 117.49621 * 145.02119 * 20 19 7 41 41 H 1.09003 * 117.49834 * 214.97943 * 21 19 7 42 42 H 1.09000 * 117.50079 * 359.97438 * 21 19 7 43 43 H 1.07996 * 119.96095 * 0.02562 * 23 22 2 44 44 H 1.08006 * 119.99488 * 180.27798 * 24 23 22 45 45 H 1.07996 * 119.99984 * 0.02562 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4547 7 6 2.1954 -0.9402 3.6508 8 1 3.1948 -1.3320 3.4614 9 6 2.2467 0.0431 4.8219 10 7 3.0547 1.2065 4.4477 11 6 3.2385 2.2282 5.3408 12 1 2.7882 2.1762 6.3210 13 6 4.0036 3.3307 4.9860 14 7 4.5529 3.3939 3.7916 15 14 4.2550 4.7242 6.2044 16 1 3.5388 4.4126 7.4674 17 1 5.7050 4.8825 6.4832 18 1 3.7206 5.9855 5.6311 19 6 1.2519 -2.0943 3.9949 20 6 1.8745 -3.4749 4.2131 21 6 1.0655 -3.1914 2.9449 22 6 2.0323 -0.7105 -1.2304 23 6 1.7025 -2.0358 -1.4456 24 6 2.1574 -2.6878 -2.5762 25 6 2.9533 -2.0173 -3.4887 26 9 3.4025 -2.6555 -4.5915 27 6 3.2887 -0.6899 -3.2700 28 9 4.0650 -0.0332 -4.1596 29 6 2.8270 -0.0381 -2.1397 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1487 0.5385 2.5436 34 1 2.6931 -0.4459 5.6877 35 1 1.2357 0.3671 5.0689 36 1 3.4558 1.2550 3.5658 37 1 5.0872 4.1645 3.5435 38 1 0.3883 -1.8297 4.6050 39 1 2.9564 -3.5607 4.1119 40 1 1.4203 -4.1184 4.9664 41 1 0.0793 -3.6488 2.8644 42 1 1.6147 -3.0908 2.0088 43 1 1.0849 -2.5606 -0.7319 44 1 1.8954 -3.7218 -2.7454 45 1 3.0879 0.9957 -1.9680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498871015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:48 Heat of formation + Delta-G solvation = -69.373484 kcal Electronic energy + Delta-G solvation = -29417.699653 eV Core-core repulsion = 25072.120003 eV Total energy + Delta-G solvation = -4345.579650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.54402 -48.62090 -40.45467 -38.93764 -37.16888 -35.06170 -34.16214 -33.31501 -31.16514 -31.01127 -29.27647 -27.93679 -24.94271 -24.04577 -23.41675 -22.49005 -22.10190 -21.53500 -20.27583 -19.92184 -18.07632 -17.61364 -17.28084 -17.04077 -16.49277 -16.35064 -16.00427 -15.52130 -15.04342 -15.02614 -14.74820 -14.57194 -14.51806 -14.08424 -13.96146 -13.63414 -13.20025 -13.13246 -13.01371 -12.88336 -12.55534 -12.23698 -11.99636 -11.78529 -11.71823 -11.61795 -11.26896 -11.14201 -11.05266 -10.94195 -10.86832 -10.20400 -10.16027 -9.97817 -9.74870 -9.55489 -9.15797 -8.97226 -8.72974 -8.67700 -7.02023 -5.83891 -3.13814 0.76903 0.88854 2.81123 3.09142 3.38386 3.44041 3.45648 3.46745 3.66808 4.06666 4.19993 4.29061 4.43265 4.50768 4.78374 4.84168 4.89666 4.92819 5.05919 5.09715 5.13008 5.23377 5.38095 5.47322 5.50359 5.58740 5.62948 5.68061 5.74041 5.77972 5.80182 5.85021 5.87722 5.95704 6.03279 6.17549 6.24783 6.31978 6.43893 6.46015 6.60479 6.63215 6.88727 7.63569 7.79561 8.33894 8.46045 9.46109 10.01063 10.36505 11.38426 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.003216 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.746010 B = 8704.962385 C =10604.857341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 H 0.114 0.886 4 C 0.523 3.477 5 O -0.538 6.538 6 N -0.703 5.703 7 C 0.169 3.831 8 H 0.088 0.912 9 C 0.148 3.852 10 N -0.732 5.732 11 C -0.242 4.242 12 H 0.071 0.929 13 C -0.011 4.011 14 N -0.931 5.931 15 Si 0.907 3.093 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.291 1.291 19 C -0.162 4.162 20 C -0.172 4.172 21 C -0.185 4.185 22 C -0.041 4.041 23 C -0.065 4.065 24 C -0.128 4.128 25 C 0.063 3.937 26 F -0.133 7.133 27 C 0.065 3.935 28 F -0.131 7.131 29 C -0.116 4.116 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.404 0.596 34 H 0.035 0.965 35 H 0.025 0.975 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.117 0.883 43 H 0.138 0.862 44 H 0.144 0.856 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.055 -11.725 -10.941 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.098 4.098 3 H 0.132 0.868 4 C 0.309 3.691 5 O -0.416 6.416 6 N -0.353 5.353 7 C 0.064 3.936 8 H 0.106 0.894 9 C 0.020 3.980 10 N -0.377 5.377 11 C -0.373 4.373 12 H 0.089 0.911 13 C -0.207 4.207 14 N -0.579 5.579 15 Si 0.738 3.262 16 H -0.206 1.206 17 H -0.218 1.218 18 H -0.219 1.219 19 C -0.181 4.181 20 C -0.209 4.209 21 C -0.222 4.222 22 C -0.041 4.041 23 C -0.083 4.083 24 C -0.147 4.147 25 C 0.043 3.957 26 F -0.111 7.111 27 C 0.045 3.955 28 F -0.109 7.109 29 C -0.135 4.135 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.239 0.761 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.135 0.865 43 H 0.155 0.845 44 H 0.162 0.838 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.503 -12.313 -10.919 19.523 hybrid contribution 0.411 1.281 0.155 1.354 sum -10.092 -11.032 -10.765 18.424 Atomic orbital electron populations 1.21799 0.91580 1.03038 1.03352 1.20340 0.97951 1.01059 0.90402 0.86835 1.20177 0.80071 0.84436 0.84440 1.90635 1.37918 1.26437 1.86622 1.45916 1.52941 1.31484 1.04920 1.20803 0.96709 0.91235 0.84856 0.89423 1.20917 0.95328 0.88113 0.93651 1.42350 1.60294 1.18081 1.16932 1.19250 1.26070 0.96420 0.95608 0.91082 1.24740 1.00345 0.98736 0.96912 1.69668 1.38174 1.30796 1.19258 0.86128 0.77541 0.82295 0.80256 1.20552 1.21839 1.21853 1.22643 1.01788 0.90030 1.03674 1.22895 0.99938 0.98070 1.00024 1.23259 1.01122 1.02235 0.95573 1.19234 0.96427 0.94011 0.94470 1.20853 0.98457 0.93507 0.95480 1.21017 0.98512 1.01103 0.94037 1.17693 1.01181 0.90041 0.86823 1.91512 1.87624 1.81451 1.50552 1.17572 0.97289 0.89777 0.90886 1.91525 1.72346 1.80533 1.66512 1.21006 0.98282 1.01617 0.92566 0.91095 0.91176 0.91782 0.76056 0.94735 0.95758 0.78032 0.93506 0.87936 0.88770 0.89262 0.89966 0.86484 0.84451 0.83817 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.91 37.16 0.33 -0.80 16 2 C -0.08 -0.82 2.90 -92.92 -0.27 -1.09 16 3 H 0.11 1.20 7.87 -51.93 -0.41 0.80 16 4 C 0.52 7.25 6.35 -10.98 -0.07 7.18 16 5 O -0.54 -8.84 12.11 5.56 0.07 -8.77 16 6 N -0.70 -9.89 4.39 -53.81 -0.24 -10.12 16 7 C 0.17 2.62 2.43 -67.94 -0.17 2.46 16 8 H 0.09 1.59 7.34 -51.93 -0.38 1.21 16 9 C 0.15 2.73 5.80 -4.04 -0.02 2.71 16 10 N -0.73 -17.31 5.43 -59.91 -0.33 -17.63 16 11 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 12 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 13 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 14 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 15 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 C -0.16 -2.09 5.36 -90.62 -0.49 -2.58 16 20 C -0.17 -2.11 10.18 -26.68 -0.27 -2.38 16 21 C -0.18 -2.26 9.74 -26.69 -0.26 -2.52 16 22 C -0.04 -0.46 4.40 -104.62 -0.46 -0.92 16 23 C -0.06 -0.68 7.92 -39.58 -0.31 -1.00 16 24 C -0.13 -1.32 10.02 -39.53 -0.40 -1.72 16 25 C 0.06 0.76 7.31 -39.37 -0.29 0.47 16 26 F -0.13 -1.70 17.18 2.25 0.04 -1.66 16 27 C 0.06 0.82 7.31 -39.37 -0.29 0.54 16 28 F -0.13 -1.78 17.18 2.25 0.04 -1.74 16 29 C -0.12 -1.35 9.65 -39.53 -0.38 -1.73 16 30 H 0.07 0.54 7.56 -51.93 -0.39 0.15 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.48 7.40 -51.93 -0.38 0.10 16 33 H 0.40 5.39 8.02 -40.82 -0.33 5.06 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.39 9.72 7.33 -40.82 -0.30 9.43 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.10 1.24 8.11 -51.93 -0.42 0.82 16 39 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.12 1.63 5.02 -51.93 -0.26 1.37 16 43 H 0.14 1.30 7.51 -52.49 -0.39 0.90 16 44 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 45 H 0.15 1.53 7.94 -52.49 -0.42 1.11 16 LS Contribution 381.06 15.07 5.74 5.74 Total: -1.00 -30.87 381.06 -8.75 -39.62 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -6.19 Total: 12.70 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -3.59 Total: -8.39 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.16 Total: -54.20 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.77 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.41 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.87 -8.75 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498871015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.754 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds