Wall clock time and date at job start Tue Mar 31 2020 21:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47190 * 2 1 4 4 C 1.50708 * 109.46951 * 120.00025 * 2 1 3 5 5 O 1.21279 * 120.00123 * 120.00083 * 4 2 1 6 6 N 1.34785 * 119.99625 * 299.99998 * 4 2 1 7 7 C 1.46496 * 119.99543 * 180.02562 * 6 4 2 8 8 H 1.09000 * 109.47337 * 35.00175 * 7 6 4 9 9 C 1.52998 * 109.47078 * 154.99826 * 7 6 4 10 10 N 1.46506 * 109.47237 * 304.99765 * 9 7 6 11 11 C 1.36939 * 120.00073 * 179.72302 * 10 9 7 12 12 H 1.08004 * 119.99859 * 0.02562 * 11 10 9 13 13 C 1.38805 * 119.99849 * 180.02562 * 11 10 9 14 14 N 1.31622 * 120.00455 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00168 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46615 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47374 * 119.99782 * 15 13 11 18 18 H 1.48495 * 109.47187 * 240.00172 * 15 13 11 19 19 C 1.52994 * 109.47150 * 274.99783 * 7 6 4 20 20 C 1.53011 * 117.50014 * 128.74789 * 19 7 6 21 21 C 1.53002 * 117.49791 * 60.08898 * 19 7 6 22 22 C 1.50700 * 109.46984 * 239.99699 * 2 1 3 23 23 C 1.38258 * 119.96627 * 299.72648 * 22 2 1 24 24 C 1.38210 * 120.06621 * 179.72798 * 23 22 2 25 25 C 1.38405 * 120.00392 * 0.54704 * 24 23 22 26 26 F 1.35103 * 120.03970 * 179.74829 * 25 24 23 27 27 C 1.38649 * 119.92730 * 359.72735 * 25 24 23 28 28 F 1.35100 * 120.03605 * 180.02562 * 27 25 24 29 29 C 1.38217 * 119.96119 * 120.00565 * 22 2 1 30 30 H 1.08998 * 109.47087 * 300.00252 * 1 2 3 31 31 H 1.08999 * 109.47306 * 60.00094 * 1 2 3 32 32 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99961 * 0.02562 * 6 4 2 34 34 H 1.09001 * 109.47671 * 185.00106 * 9 7 6 35 35 H 1.08998 * 109.47454 * 65.00103 * 9 7 6 36 36 H 0.97005 * 119.99811 * 0.02562 * 10 9 7 37 37 H 0.97000 * 120.00679 * 179.97438 * 14 13 11 38 38 H 1.09001 * 115.55265 * 274.41372 * 19 7 6 39 39 H 1.09000 * 117.49671 * 0.02562 * 20 19 7 40 40 H 1.08997 * 117.49621 * 145.02119 * 20 19 7 41 41 H 1.09003 * 117.49834 * 214.97943 * 21 19 7 42 42 H 1.09000 * 117.50079 * 359.97438 * 21 19 7 43 43 H 1.07996 * 119.96095 * 0.02562 * 23 22 2 44 44 H 1.08006 * 119.99488 * 180.27798 * 24 23 22 45 45 H 1.07996 * 119.99984 * 0.02562 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4547 7 6 2.1954 -0.9402 3.6508 8 1 3.1948 -1.3320 3.4614 9 6 2.2467 0.0431 4.8219 10 7 3.0547 1.2065 4.4477 11 6 3.2385 2.2282 5.3408 12 1 2.7882 2.1762 6.3210 13 6 4.0036 3.3307 4.9860 14 7 4.5529 3.3939 3.7916 15 14 4.2550 4.7242 6.2044 16 1 3.5388 4.4126 7.4674 17 1 5.7050 4.8825 6.4832 18 1 3.7206 5.9855 5.6311 19 6 1.2519 -2.0943 3.9949 20 6 1.8745 -3.4749 4.2131 21 6 1.0655 -3.1914 2.9449 22 6 2.0323 -0.7105 -1.2304 23 6 1.7025 -2.0358 -1.4456 24 6 2.1574 -2.6878 -2.5762 25 6 2.9533 -2.0173 -3.4887 26 9 3.4025 -2.6555 -4.5915 27 6 3.2887 -0.6899 -3.2700 28 9 4.0650 -0.0332 -4.1596 29 6 2.8270 -0.0381 -2.1397 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1487 0.5385 2.5436 34 1 2.6931 -0.4459 5.6877 35 1 1.2357 0.3671 5.0689 36 1 3.4558 1.2550 3.5658 37 1 5.0872 4.1645 3.5435 38 1 0.3883 -1.8297 4.6050 39 1 2.9564 -3.5607 4.1119 40 1 1.4203 -4.1184 4.9664 41 1 0.0793 -3.6488 2.8644 42 1 1.6147 -3.0908 2.0088 43 1 1.0849 -2.5606 -0.7319 44 1 1.8954 -3.7218 -2.7454 45 1 3.0879 0.9957 -1.9680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498871015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:47 Heat of formation + Delta-G solvation = -86.418224 kcal Electronic energy + Delta-G solvation = -29418.438768 eV Core-core repulsion = 25072.120003 eV Total energy + Delta-G solvation = -4346.318766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.52888 -49.61364 -41.49946 -39.93016 -38.27967 -36.58490 -35.20648 -34.66774 -32.89429 -31.92229 -30.30152 -29.31569 -26.08884 -25.55021 -24.29719 -23.61626 -23.06619 -22.95223 -21.37505 -21.02090 -19.26695 -18.98564 -18.47239 -18.10446 -17.56703 -17.35622 -17.07927 -16.64323 -16.61748 -16.04396 -15.83388 -15.77429 -15.51482 -15.25246 -15.13169 -14.96332 -14.64387 -14.47464 -14.03613 -13.80312 -13.70706 -13.26422 -13.16236 -12.96646 -12.81707 -12.66799 -12.58379 -12.48310 -12.42305 -12.14629 -12.02365 -11.96467 -11.83226 -11.18004 -11.03569 -10.97559 -10.61429 -10.05803 -9.85419 -9.65466 -8.99529 -7.93555 -5.22499 -0.14471 0.00970 1.49068 1.50395 1.59561 1.72548 2.10003 2.46982 2.57186 2.76417 3.08010 3.26641 3.40567 3.41438 3.57320 3.63476 3.85053 4.01863 4.06190 4.09770 4.17735 4.22656 4.23929 4.28787 4.40090 4.52500 4.69067 4.71242 4.77906 4.83520 4.87390 4.93581 4.94196 4.97607 5.04323 5.11293 5.16461 5.29388 5.34851 5.40185 5.45517 5.52548 5.65890 5.72361 6.27559 6.67868 7.35307 7.35620 8.08642 8.32542 9.29452 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.003216 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.746010 B = 8704.962385 C =10604.857341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 H 0.113 0.887 4 C 0.521 3.479 5 O -0.566 6.566 6 N -0.701 5.701 7 C 0.180 3.820 8 H 0.056 0.944 9 C 0.149 3.851 10 N -0.742 5.742 11 C -0.241 4.241 12 H 0.078 0.922 13 C -0.071 4.071 14 N -0.967 5.967 15 Si 0.969 3.031 16 H -0.265 1.265 17 H -0.299 1.299 18 H -0.293 1.293 19 C -0.163 4.163 20 C -0.172 4.172 21 C -0.174 4.174 22 C -0.046 4.046 23 C -0.063 4.063 24 C -0.119 4.119 25 C 0.049 3.951 26 F -0.140 7.140 27 C 0.046 3.954 28 F -0.142 7.142 29 C -0.122 4.122 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.409 0.591 34 H 0.032 0.968 35 H 0.042 0.958 36 H 0.375 0.625 37 H 0.250 0.750 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.153 0.847 44 H 0.171 0.829 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.286 -12.545 -10.006 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.091 4.091 3 H 0.131 0.869 4 C 0.308 3.692 5 O -0.445 6.445 6 N -0.351 5.351 7 C 0.075 3.925 8 H 0.074 0.926 9 C 0.023 3.977 10 N -0.385 5.385 11 C -0.373 4.373 12 H 0.096 0.904 13 C -0.264 4.264 14 N -0.617 5.617 15 Si 0.799 3.201 16 H -0.190 1.190 17 H -0.227 1.227 18 H -0.220 1.220 19 C -0.183 4.183 20 C -0.210 4.210 21 C -0.211 4.211 22 C -0.046 4.046 23 C -0.081 4.081 24 C -0.138 4.138 25 C 0.029 3.971 26 F -0.118 7.118 27 C 0.026 3.974 28 F -0.121 7.121 29 C -0.141 4.141 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.245 0.755 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.207 0.793 37 H 0.058 0.942 38 H 0.138 0.862 39 H 0.096 0.904 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.118 0.882 43 H 0.170 0.830 44 H 0.188 0.812 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.774 -13.153 -9.959 20.865 hybrid contribution 1.105 1.456 -0.098 1.830 sum -11.670 -11.697 -10.056 19.342 Atomic orbital electron populations 1.21818 0.89069 1.03979 1.04408 1.20335 0.99933 1.00331 0.88508 0.86853 1.20673 0.79408 0.84126 0.84986 1.90627 1.39082 1.27814 1.87019 1.45873 1.52885 1.31595 1.04729 1.20495 0.96197 0.91392 0.84409 0.92606 1.21044 0.94975 0.86997 0.94732 1.42514 1.60880 1.19044 1.16087 1.19639 1.24777 0.96780 0.96068 0.90416 1.25487 1.01039 1.01305 0.98540 1.69816 1.39515 1.31326 1.21085 0.85136 0.76798 0.79365 0.78811 1.18976 1.22694 1.21998 1.22532 1.01740 0.89213 1.04781 1.22965 0.99281 0.97885 1.00869 1.23229 1.01932 1.01375 0.94567 1.19369 0.96328 0.94522 0.94416 1.21068 0.98204 0.93215 0.95613 1.21294 0.97226 1.02145 0.93127 1.17921 1.01923 0.90035 0.87180 1.91490 1.87839 1.81509 1.50993 1.17809 0.97987 0.90315 0.91309 1.91488 1.72788 1.80825 1.66950 1.21125 0.98391 1.02111 0.92483 0.90457 0.89724 0.90896 0.75518 0.95035 0.94047 0.79296 0.94159 0.86243 0.90416 0.87040 0.87601 0.88195 0.82986 0.81196 0.82827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.91 71.98 0.64 -1.22 16 2 C -0.07 -1.43 2.90 -12.28 -0.04 -1.47 16 3 H 0.11 2.34 7.87 -2.39 -0.02 2.32 16 4 C 0.52 14.08 6.35 87.66 0.56 14.63 16 5 O -0.57 -18.45 12.11 -3.03 -0.04 -18.49 16 6 N -0.70 -19.16 4.39 -442.54 -1.94 -21.10 16 7 C 0.18 5.50 2.43 44.99 0.11 5.60 16 8 H 0.06 2.07 7.34 -2.39 -0.02 2.06 16 9 C 0.15 5.37 5.80 86.38 0.50 5.87 16 10 N -0.74 -35.03 5.43 -343.44 -1.87 -36.89 16 11 C -0.24 -12.71 9.99 84.03 0.84 -11.87 16 12 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 13 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 14 N -0.97 -57.22 13.06 21.65 0.28 -56.93 16 15 Si 0.97 44.64 29.55 68.60 2.03 46.66 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 17 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 18 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 19 C -0.16 -3.88 5.36 -10.79 -0.06 -3.94 16 20 C -0.17 -3.91 10.18 30.62 0.31 -3.60 16 21 C -0.17 -3.83 9.74 30.62 0.30 -3.54 16 22 C -0.05 -0.99 4.40 -19.86 -0.09 -1.07 16 23 C -0.06 -1.22 7.92 22.27 0.18 -1.05 16 24 C -0.12 -2.29 10.02 22.30 0.22 -2.06 16 25 C 0.05 1.18 7.31 22.41 0.16 1.35 16 26 F -0.14 -3.56 17.18 44.97 0.77 -2.79 16 27 C 0.05 1.18 7.31 22.41 0.16 1.34 16 28 F -0.14 -3.99 17.18 44.97 0.77 -3.22 16 29 C -0.12 -2.85 9.65 22.31 0.22 -2.64 16 30 H 0.08 0.98 7.56 -2.39 -0.02 0.96 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.89 7.40 -2.39 -0.02 0.87 16 33 H 0.41 10.43 8.02 -92.71 -0.74 9.69 16 34 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 36 H 0.37 19.18 7.33 -92.70 -0.68 18.50 16 37 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 38 H 0.12 2.49 8.11 -2.39 -0.02 2.47 16 39 H 0.08 2.02 8.05 -2.39 -0.02 2.00 16 40 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.10 2.63 5.02 -2.39 -0.01 2.62 16 43 H 0.15 2.51 7.51 -2.91 -0.02 2.48 16 44 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.15 3.25 7.94 -2.91 -0.02 3.22 16 Total: -1.00 -66.49 381.06 4.11 -62.38 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -0.38 Total: 37.50 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 4.49 Total: -7.12 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -3.53 Total: -114.93 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.04 Total: -18.49 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 1.55 Total: -6.00 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -66.49 4.11 -62.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498871015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.035 kcal (2) G-P(sol) polarization free energy of solvation -66.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds