Wall clock time and date at job start Tue Mar 31 2020 21:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46651 * 2 1 4 4 N 1.46505 * 109.47206 * 119.99347 * 2 1 3 5 5 C 1.34773 * 120.00065 * 275.00050 * 4 2 1 6 6 O 1.21282 * 120.00084 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00201 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47493 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.47462 * 180.02562 * 8 7 5 10 10 C 1.38238 * 119.98747 * 265.23450 * 9 8 7 11 11 C 1.38182 * 120.04926 * 180.23109 * 10 9 8 12 12 C 1.38497 * 120.02770 * 359.78734 * 11 10 9 13 13 F 1.35103 * 120.01374 * 180.02562 * 12 11 10 14 14 C 1.38397 * 119.97392 * 359.97438 * 12 11 10 15 15 C 1.38438 * 119.94948 * 0.02562 * 14 12 11 16 16 F 1.35104 * 120.01364 * 179.97438 * 15 14 12 17 17 C 1.52995 * 109.47568 * 239.99641 * 2 1 3 18 18 C 1.53943 * 113.74578 * 156.67022 * 17 2 1 19 19 N 1.47576 * 86.11818 * 222.04567 * 18 17 2 20 20 C 1.36936 * 134.49454 * 204.63494 * 19 18 17 21 21 H 1.08000 * 120.00285 * 180.02562 * 20 19 18 22 22 C 1.38809 * 119.99875 * 0.02562 * 20 19 18 23 23 N 1.31623 * 120.00146 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00164 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47386 * 89.99638 * 24 22 20 26 26 H 1.48499 * 109.47222 * 210.00169 * 24 22 20 27 27 H 1.48506 * 109.46618 * 329.99627 * 24 22 20 28 28 C 1.47585 * 91.01558 * 24.64305 * 19 18 17 29 29 H 1.09002 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47082 * 300.00248 * 1 2 3 31 31 H 1.08998 * 109.47627 * 60.00730 * 1 2 3 32 32 H 0.96993 * 119.99654 * 95.00219 * 4 2 1 33 33 H 1.09004 * 109.46785 * 60.00354 * 7 5 4 34 34 H 1.08993 * 109.47111 * 300.00423 * 7 5 4 35 35 H 1.08998 * 109.46960 * 59.99807 * 8 7 5 36 36 H 1.09007 * 109.47243 * 300.00323 * 8 7 5 37 37 H 1.08004 * 119.97328 * 359.97167 * 10 9 8 38 38 H 1.08004 * 119.98465 * 179.76793 * 11 10 9 39 39 H 1.07995 * 120.02726 * 180.02562 * 14 12 11 40 40 H 1.09001 * 112.94373 * 288.41227 * 17 2 1 41 41 H 1.08999 * 113.76491 * 336.35212 * 18 17 2 42 42 H 1.09003 * 113.76893 * 107.74673 * 18 17 2 43 43 H 0.96994 * 120.00214 * 180.02562 * 23 22 20 44 44 H 1.08995 * 113.76877 * 221.05861 * 28 19 18 45 45 H 1.08998 * 113.77128 * 89.65668 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1471 -0.0180 2.3572 6 8 1.8582 1.1586 2.4116 7 6 2.6489 -0.7284 3.5878 8 6 2.6999 0.2547 4.7591 9 6 3.2023 -0.4555 5.9896 10 6 2.3038 -0.9853 6.8968 11 6 2.7630 -1.6327 8.0279 12 6 4.1243 -1.7552 8.2518 13 9 4.5730 -2.3886 9.3576 14 6 5.0247 -1.2295 7.3418 15 6 4.5635 -0.5812 6.2088 16 9 5.4414 -0.0671 5.3199 17 6 2.0401 -0.7213 -1.2491 18 6 3.4666 -0.3146 -1.6607 19 7 2.9584 -0.3122 -3.0462 20 6 3.5329 -0.4680 -4.2794 21 1 2.9224 -0.4224 -5.1692 22 6 4.8998 -0.6847 -4.3859 23 7 5.6439 -0.7398 -3.3016 24 14 5.6837 -0.8965 -6.0682 25 1 6.1045 0.4290 -6.5888 26 1 6.8697 -1.7827 -5.9537 27 1 4.6997 -1.5046 -6.9997 28 6 1.5823 -0.0742 -2.5689 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 2.2491 -1.6316 1.1528 33 1 3.6481 -1.1209 3.3987 34 1 1.9760 -1.5502 3.8327 35 1 1.7006 0.6468 4.9480 36 1 3.3725 1.0768 4.5144 37 1 1.2420 -0.8896 6.7234 38 1 2.0601 -2.0429 8.7379 39 1 6.0864 -1.3249 7.5153 40 1 1.8828 -1.7992 -1.2113 41 1 3.7639 0.6701 -1.3000 42 1 4.2153 -1.0832 -1.4687 43 1 6.5991 -0.8908 -3.3760 44 1 0.8265 -0.6509 -3.1019 45 1 1.3262 0.9811 -2.4750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506668738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:54 Heat of formation + Delta-G solvation = -61.133661 kcal Electronic energy + Delta-G solvation = -28160.257463 eV Core-core repulsion = 23815.035118 eV Total energy + Delta-G solvation = -4345.222345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.38918 -49.28640 -39.96087 -39.27463 -38.07763 -34.88895 -34.13165 -32.21441 -31.29185 -30.75438 -29.30655 -27.51265 -25.35554 -24.59040 -23.83708 -23.60223 -21.98613 -21.07424 -20.23688 -18.98701 -18.57347 -17.63809 -17.12378 -16.76295 -16.34817 -16.20689 -16.04692 -15.63281 -15.59265 -15.35977 -14.87682 -14.76983 -14.34909 -14.08641 -13.83435 -13.66417 -13.47866 -13.06601 -12.85207 -12.77727 -12.46375 -12.11224 -12.10349 -11.91446 -11.71651 -11.66294 -11.31585 -11.28843 -11.21865 -10.91265 -10.71144 -10.35851 -9.97959 -9.74950 -9.68433 -9.49380 -9.39453 -8.97730 -8.79192 -8.77867 -6.86714 -5.75908 -3.08279 0.50921 0.57686 2.77297 2.89522 3.33844 3.39484 3.44050 3.46082 3.47250 4.00864 4.14921 4.26099 4.41833 4.45706 4.67404 4.75636 4.93023 4.97194 5.14349 5.28233 5.29403 5.34385 5.37514 5.40984 5.51799 5.53439 5.54747 5.63690 5.66556 5.81636 5.89185 5.94581 5.95090 6.03997 6.25109 6.34826 6.36480 6.41185 6.59711 6.67626 6.82535 7.24385 7.37325 7.56975 7.69075 7.99310 8.38225 9.05681 9.71725 10.61207 11.41102 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.002077 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.206295 B =13476.412221 C =14767.879741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.150 3.850 3 H 0.087 0.913 4 N -0.718 5.718 5 C 0.513 3.487 6 O -0.546 6.546 7 C -0.137 4.137 8 C -0.064 4.064 9 C -0.124 4.124 10 C -0.058 4.058 11 C -0.162 4.162 12 C 0.123 3.877 13 F -0.133 7.133 14 C -0.191 4.191 15 C 0.135 3.865 16 F -0.124 7.124 17 C -0.146 4.146 18 C 0.171 3.829 19 N -0.613 5.613 20 C -0.223 4.223 21 H 0.079 0.921 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.129 3.871 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.400 0.600 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.087 0.913 41 H 0.025 0.975 42 H 0.071 0.929 43 H 0.253 0.747 44 H 0.044 0.956 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.212 -3.536 24.336 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.105 0.895 4 N -0.368 5.368 5 C 0.299 3.701 6 O -0.423 6.423 7 C -0.178 4.178 8 C -0.102 4.102 9 C -0.125 4.125 10 C -0.076 4.076 11 C -0.181 4.181 12 C 0.104 3.896 13 F -0.112 7.112 14 C -0.210 4.210 15 C 0.115 3.885 16 F -0.102 7.102 17 C -0.166 4.166 18 C 0.045 3.955 19 N -0.339 5.339 20 C -0.350 4.350 21 H 0.097 0.903 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.003 3.997 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.233 0.767 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.166 0.834 40 H 0.106 0.894 41 H 0.043 0.957 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.092 -2.752 24.120 25.590 hybrid contribution 1.040 -0.558 -0.865 1.463 sum -7.052 -3.310 23.256 24.526 Atomic orbital electron populations 1.22124 0.95763 1.01651 1.02037 1.21087 0.93398 0.97598 0.83431 0.89526 1.46120 1.66830 1.14111 1.09747 1.20499 0.77571 0.87352 0.84637 1.90694 1.50463 1.15987 1.85205 1.21655 1.03715 0.99457 0.92929 1.20277 1.03497 0.97142 0.89266 1.20108 0.91373 1.01885 0.99100 1.20850 1.00220 0.94677 0.91878 1.21217 0.93741 1.03134 1.00028 1.17314 0.92192 0.95851 0.84272 1.91536 1.89925 1.79447 1.50264 1.21062 1.01620 1.03424 0.94928 1.17207 0.86701 0.96540 0.88027 1.91575 1.68112 1.84253 1.66284 1.23815 1.00937 0.99633 0.92262 1.22258 0.91713 0.98258 0.83234 1.45961 1.02484 1.83276 1.02171 1.19025 0.91100 1.41976 0.82925 0.90282 1.24791 0.95980 1.02460 0.97324 1.69817 1.05156 1.55673 1.26216 0.86126 0.78898 0.77568 0.83206 1.21628 1.21641 1.20626 1.22502 0.89699 0.96740 0.90777 0.92802 0.92844 0.91474 0.76651 0.88633 0.88735 0.89299 0.89403 0.83715 0.83984 0.83389 0.89440 0.95689 0.91062 0.93669 0.93785 0.94775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.29 37.16 0.35 -1.69 16 2 C 0.15 2.25 2.42 -67.93 -0.16 2.09 16 3 H 0.09 1.54 7.37 -51.93 -0.38 1.16 16 4 N -0.72 -9.18 5.08 -53.80 -0.27 -9.45 16 5 C 0.51 6.71 7.79 -10.99 -0.09 6.63 16 6 O -0.55 -9.15 15.64 5.56 0.09 -9.06 16 7 C -0.14 -1.26 5.68 -27.88 -0.16 -1.42 16 8 C -0.06 -0.59 4.41 -27.89 -0.12 -0.71 16 9 C -0.12 -1.00 5.14 -104.55 -0.54 -1.54 16 10 C -0.06 -0.36 9.68 -39.60 -0.38 -0.74 16 11 C -0.16 -1.01 10.02 -39.51 -0.40 -1.41 16 12 C 0.12 0.96 7.30 -39.43 -0.29 0.67 16 13 F -0.13 -1.14 17.27 2.25 0.04 -1.10 16 14 C -0.19 -1.56 10.01 -39.45 -0.39 -1.96 16 15 C 0.13 1.24 7.24 -39.43 -0.29 0.95 16 16 F -0.12 -1.36 16.56 2.25 0.04 -1.33 16 17 C -0.15 -2.58 3.50 -89.70 -0.31 -2.90 16 18 C 0.17 3.98 7.07 -2.98 -0.02 3.96 16 19 N -0.61 -15.76 3.70 -177.92 -0.66 -16.42 16 20 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 23 N -0.92 -27.53 11.38 55.49 0.63 -26.89 16 24 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.13 2.59 7.56 -2.97 -0.02 2.56 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.85 7.43 -51.93 -0.39 0.47 16 32 H 0.40 4.22 8.60 -40.82 -0.35 3.86 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.77 8.01 -51.93 -0.42 0.36 16 36 H 0.09 0.97 7.75 -51.93 -0.40 0.57 16 37 H 0.15 0.57 8.06 -52.48 -0.42 0.14 16 38 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 39 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.03 0.62 7.96 -51.93 -0.41 0.21 16 42 H 0.07 1.83 7.15 -51.93 -0.37 1.46 16 43 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -33.63 385.31 -8.93 -42.56 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.49 Total: 0.95 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -3.08 Total: -2.32 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.30 Total: -52.76 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.08 Total: -2.43 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.63 -8.93 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506668738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.572 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds