Wall clock time and date at job start Tue Mar 31 2020 21:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46651 * 2 1 4 4 N 1.46505 * 109.47206 * 119.99347 * 2 1 3 5 5 C 1.34773 * 120.00065 * 275.00050 * 4 2 1 6 6 O 1.21282 * 120.00084 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00201 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47493 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.47462 * 180.02562 * 8 7 5 10 10 C 1.38238 * 119.98747 * 265.23450 * 9 8 7 11 11 C 1.38182 * 120.04926 * 180.23109 * 10 9 8 12 12 C 1.38497 * 120.02770 * 359.78734 * 11 10 9 13 13 F 1.35103 * 120.01374 * 180.02562 * 12 11 10 14 14 C 1.38397 * 119.97392 * 359.97438 * 12 11 10 15 15 C 1.38438 * 119.94948 * 0.02562 * 14 12 11 16 16 F 1.35104 * 120.01364 * 179.97438 * 15 14 12 17 17 C 1.52995 * 109.47568 * 239.99641 * 2 1 3 18 18 C 1.53943 * 113.74578 * 156.67022 * 17 2 1 19 19 N 1.47576 * 86.11818 * 222.04567 * 18 17 2 20 20 C 1.36936 * 134.49454 * 204.63494 * 19 18 17 21 21 H 1.08000 * 120.00285 * 180.02562 * 20 19 18 22 22 C 1.38809 * 119.99875 * 0.02562 * 20 19 18 23 23 N 1.31623 * 120.00146 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00164 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47386 * 89.99638 * 24 22 20 26 26 H 1.48499 * 109.47222 * 210.00169 * 24 22 20 27 27 H 1.48506 * 109.46618 * 329.99627 * 24 22 20 28 28 C 1.47585 * 91.01558 * 24.64305 * 19 18 17 29 29 H 1.09002 * 109.47050 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47082 * 300.00248 * 1 2 3 31 31 H 1.08998 * 109.47627 * 60.00730 * 1 2 3 32 32 H 0.96993 * 119.99654 * 95.00219 * 4 2 1 33 33 H 1.09004 * 109.46785 * 60.00354 * 7 5 4 34 34 H 1.08993 * 109.47111 * 300.00423 * 7 5 4 35 35 H 1.08998 * 109.46960 * 59.99807 * 8 7 5 36 36 H 1.09007 * 109.47243 * 300.00323 * 8 7 5 37 37 H 1.08004 * 119.97328 * 359.97167 * 10 9 8 38 38 H 1.08004 * 119.98465 * 179.76793 * 11 10 9 39 39 H 1.07995 * 120.02726 * 180.02562 * 14 12 11 40 40 H 1.09001 * 112.94373 * 288.41227 * 17 2 1 41 41 H 1.08999 * 113.76491 * 336.35212 * 18 17 2 42 42 H 1.09003 * 113.76893 * 107.74673 * 18 17 2 43 43 H 0.96994 * 120.00214 * 180.02562 * 23 22 20 44 44 H 1.08995 * 113.76877 * 221.05861 * 28 19 18 45 45 H 1.08998 * 113.77128 * 89.65668 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1471 -0.0180 2.3572 6 8 1.8582 1.1586 2.4116 7 6 2.6489 -0.7284 3.5878 8 6 2.6999 0.2547 4.7591 9 6 3.2023 -0.4555 5.9896 10 6 2.3038 -0.9853 6.8968 11 6 2.7630 -1.6327 8.0279 12 6 4.1243 -1.7552 8.2518 13 9 4.5730 -2.3886 9.3576 14 6 5.0247 -1.2295 7.3418 15 6 4.5635 -0.5812 6.2088 16 9 5.4414 -0.0671 5.3199 17 6 2.0401 -0.7213 -1.2491 18 6 3.4666 -0.3146 -1.6607 19 7 2.9584 -0.3122 -3.0462 20 6 3.5329 -0.4680 -4.2794 21 1 2.9224 -0.4224 -5.1692 22 6 4.8998 -0.6847 -4.3859 23 7 5.6439 -0.7398 -3.3016 24 14 5.6837 -0.8965 -6.0682 25 1 6.1045 0.4290 -6.5888 26 1 6.8697 -1.7827 -5.9537 27 1 4.6997 -1.5046 -6.9997 28 6 1.5823 -0.0742 -2.5689 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 2.2491 -1.6316 1.1528 33 1 3.6481 -1.1209 3.3987 34 1 1.9760 -1.5502 3.8327 35 1 1.7006 0.6468 4.9480 36 1 3.3725 1.0768 4.5144 37 1 1.2420 -0.8896 6.7234 38 1 2.0601 -2.0429 8.7379 39 1 6.0864 -1.3249 7.5153 40 1 1.8828 -1.7992 -1.2113 41 1 3.7639 0.6701 -1.3000 42 1 4.2153 -1.0832 -1.4687 43 1 6.5991 -0.8908 -3.3760 44 1 0.8265 -0.6509 -3.1019 45 1 1.3262 0.9811 -2.4750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506668738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:53 Heat of formation + Delta-G solvation = -81.174784 kcal Electronic energy + Delta-G solvation = -28161.126511 eV Core-core repulsion = 23815.035118 eV Total energy + Delta-G solvation = -4346.091393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.04087 -50.00078 -41.06113 -40.04653 -39.54854 -36.19943 -34.92245 -34.16690 -32.05433 -31.76340 -30.14733 -29.31844 -26.71117 -25.89835 -25.36660 -24.18103 -23.07575 -22.18228 -21.37273 -20.48284 -19.20562 -18.77225 -18.27724 -18.09121 -17.38079 -16.98075 -16.91753 -16.82399 -16.42555 -16.34033 -16.17847 -15.74741 -15.50131 -15.29702 -14.87302 -14.78588 -14.64809 -14.36085 -13.94528 -13.62769 -13.58609 -13.35658 -13.22274 -13.08621 -12.90973 -12.76532 -12.63768 -12.56550 -12.49267 -12.37909 -12.00008 -11.94051 -11.73608 -11.47010 -11.23829 -10.89868 -10.76544 -10.06462 -9.96107 -9.60844 -8.92847 -7.91387 -5.25209 -0.08836 0.01781 1.44145 1.46507 1.55104 1.73712 2.22232 2.41823 2.46809 2.87039 3.29308 3.38204 3.41529 3.55330 3.60569 3.75433 3.89694 3.94419 4.00175 4.10465 4.25205 4.29324 4.33005 4.53335 4.61245 4.67613 4.72906 4.75524 4.83914 4.85602 4.90115 4.94152 4.96245 5.03224 5.08578 5.14528 5.18111 5.25760 5.31965 5.36770 5.50938 5.59563 5.69929 5.77735 5.93505 6.67070 6.91140 7.36154 7.60204 8.56134 9.25396 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.002077 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.206295 B =13476.412221 C =14767.879741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.158 3.842 3 H 0.055 0.945 4 N -0.713 5.713 5 C 0.510 3.490 6 O -0.586 6.586 7 C -0.128 4.128 8 C -0.060 4.060 9 C -0.125 4.125 10 C -0.048 4.048 11 C -0.151 4.151 12 C 0.112 3.888 13 F -0.139 7.139 14 C -0.197 4.197 15 C 0.111 3.889 16 F -0.143 7.143 17 C -0.108 4.108 18 C 0.167 3.833 19 N -0.645 5.645 20 C -0.234 4.234 21 H 0.085 0.915 22 C -0.071 4.071 23 N -0.955 5.955 24 Si 0.980 3.020 25 H -0.289 1.289 26 H -0.294 1.294 27 H -0.265 1.265 28 C 0.129 3.871 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.413 0.587 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.176 0.824 38 H 0.169 0.831 39 H 0.151 0.849 40 H 0.106 0.894 41 H 0.000 1.000 42 H 0.041 0.959 43 H 0.248 0.752 44 H 0.066 0.934 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.758 -5.066 25.089 27.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.053 3.947 3 H 0.073 0.927 4 N -0.365 5.365 5 C 0.298 3.702 6 O -0.467 6.467 7 C -0.168 4.168 8 C -0.098 4.098 9 C -0.126 4.126 10 C -0.066 4.066 11 C -0.169 4.169 12 C 0.093 3.907 13 F -0.118 7.118 14 C -0.217 4.217 15 C 0.092 3.908 16 F -0.121 7.121 17 C -0.128 4.128 18 C 0.041 3.959 19 N -0.372 5.372 20 C -0.363 4.363 21 H 0.103 0.897 22 C -0.264 4.264 23 N -0.604 5.604 24 Si 0.808 3.192 25 H -0.217 1.217 26 H -0.220 1.220 27 H -0.189 1.189 28 C 0.004 3.996 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.249 0.751 33 H 0.115 0.885 34 H 0.149 0.851 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.193 0.807 38 H 0.187 0.813 39 H 0.169 0.831 40 H 0.124 0.876 41 H 0.018 0.982 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.673 -4.304 24.879 27.412 hybrid contribution 1.800 -0.042 -1.053 2.086 sum -8.874 -4.347 23.827 25.794 Atomic orbital electron populations 1.22029 0.93227 1.03129 1.02189 1.20790 0.95135 0.95645 0.83168 0.92681 1.46044 1.66631 1.14718 1.09061 1.21161 0.76588 0.86930 0.85473 1.90679 1.52245 1.17871 1.85876 1.21663 1.04341 0.99920 0.90833 1.20181 1.03238 0.96496 0.89839 1.20080 0.91113 1.02202 0.99184 1.21161 1.01303 0.93260 0.90846 1.21534 0.93302 1.01899 1.00194 1.17504 0.92968 0.96159 0.84078 1.91523 1.90124 1.79610 1.50521 1.21131 1.02168 1.03479 0.94880 1.17455 0.87111 0.97824 0.88437 1.91525 1.68837 1.84771 1.67003 1.23435 0.96006 1.00598 0.92719 1.22145 0.94371 0.96156 0.83217 1.46414 1.05192 1.83468 1.02090 1.19465 0.91608 1.40791 0.84413 0.89694 1.25671 0.96684 1.03066 1.00966 1.70018 1.04887 1.57252 1.28282 0.85061 0.77852 0.77194 0.79134 1.21662 1.21998 1.18914 1.22701 0.87680 0.97649 0.91579 0.90584 0.92941 0.91139 0.75067 0.88527 0.85100 0.88476 0.92209 0.80659 0.81317 0.83106 0.87589 0.98219 0.94056 0.94359 0.91626 0.94026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.29 71.98 0.67 -2.76 16 2 C 0.16 4.60 2.42 44.99 0.11 4.71 16 3 H 0.05 1.99 7.37 -2.38 -0.02 1.97 16 4 N -0.71 -17.30 5.08 -442.53 -2.25 -19.54 16 5 C 0.51 12.92 7.79 87.66 0.68 13.61 16 6 O -0.59 -19.75 15.64 -3.04 -0.05 -19.79 16 7 C -0.13 -2.14 5.68 29.85 0.17 -1.98 16 8 C -0.06 -1.05 4.41 29.85 0.13 -0.91 16 9 C -0.12 -1.85 5.14 -19.81 -0.10 -1.95 16 10 C -0.05 -0.44 9.68 22.26 0.22 -0.22 16 11 C -0.15 -1.43 10.02 22.32 0.22 -1.21 16 12 C 0.11 1.59 7.30 22.37 0.16 1.76 16 13 F -0.14 -2.21 17.27 44.97 0.78 -1.44 16 14 C -0.20 -3.18 10.01 22.36 0.22 -2.96 16 15 C 0.11 2.04 7.24 22.37 0.16 2.20 16 16 F -0.14 -3.32 16.56 44.97 0.74 -2.58 16 17 C -0.11 -3.69 3.50 -10.14 -0.04 -3.73 16 18 C 0.17 7.99 7.07 86.48 0.61 8.61 16 19 N -0.65 -33.40 3.70 -716.82 -2.65 -36.05 16 20 C -0.23 -13.32 10.70 84.03 0.90 -12.42 16 21 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 22 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 23 N -0.96 -58.82 11.38 21.65 0.25 -58.57 16 24 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 28 C 0.13 4.99 7.56 86.48 0.65 5.64 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.60 7.43 -2.39 -0.02 1.58 16 32 H 0.41 7.84 8.60 -92.71 -0.80 7.04 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.52 8.01 -2.39 -0.02 1.50 16 36 H 0.06 1.38 7.75 -2.38 -0.02 1.36 16 37 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 38 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 39 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 41 H 0.00 0.00 7.96 -2.39 -0.02 -0.02 16 42 H 0.04 2.21 7.15 -2.39 -0.02 2.19 16 43 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.04 1.58 8.06 -2.39 -0.02 1.56 16 Total: -1.00 -76.00 385.31 4.31 -71.69 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.21 Total: 13.24 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 5.24 Total: 4.72 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -4.65 Total: -114.16 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.05 Total: -19.79 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 1.52 Total: -4.02 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -76.00 4.31 -71.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506668738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.485 kcal (2) G-P(sol) polarization free energy of solvation -75.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds