Wall clock time and date at job start Tue Mar 31 2020 20:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 110.36779 * 2 1 4 4 C 1.54385 * 110.41003 * 237.65025 * 2 1 3 5 5 H 1.08995 * 110.32619 * 336.14440 * 4 2 1 6 6 N 1.46500 * 110.32284 * 98.25615 * 4 2 1 7 7 C 1.34777 * 119.99886 * 204.99976 * 6 4 2 8 8 O 1.21281 * 119.99591 * 359.97438 * 7 6 4 9 9 C 1.50696 * 119.99925 * 179.97438 * 7 6 4 10 10 S 1.81002 * 109.46783 * 179.97438 * 9 7 6 11 11 C 1.76206 * 99.99712 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00369 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99997 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00128 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99726 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47163 * 90.00144 * 15 13 11 17 17 H 1.48503 * 109.47177 * 209.99645 * 15 13 11 18 18 H 1.48501 * 109.47474 * 329.99828 * 15 13 11 19 19 C 1.54266 * 105.05754 * 217.24911 * 4 2 1 20 20 C 1.54375 * 105.06062 * 0.02562 * 19 4 2 21 21 N 1.48556 * 110.50984 * 122.41953 * 2 1 3 22 22 C 1.46901 * 110.99998 * 277.86739 * 21 2 1 23 23 C 1.50701 * 109.47218 * 169.99964 * 22 21 2 24 24 C 1.34677 * 126.58929 * 95.02455 * 23 22 21 25 25 N 1.34127 * 108.02109 * 179.97438 * 24 23 22 26 26 C 1.30502 * 109.25636 * 0.02562 * 25 24 23 27 27 N 1.35046 * 108.69564 * 359.76668 * 26 25 24 28 28 C 1.46506 * 126.39161 * 180.26935 * 27 26 25 29 29 H 1.09003 * 109.47098 * 180.70062 * 1 2 3 30 30 H 1.08995 * 109.47051 * 300.70134 * 1 2 3 31 31 H 1.08997 * 109.46789 * 60.70435 * 1 2 3 32 32 H 0.96999 * 120.00349 * 24.99198 * 6 4 2 33 33 H 1.08998 * 109.47292 * 299.99878 * 9 7 6 34 34 H 1.09000 * 109.47260 * 59.99892 * 9 7 6 35 35 H 0.97005 * 119.99597 * 180.02562 * 14 13 11 36 36 H 1.09001 * 110.32231 * 118.89861 * 19 4 2 37 37 H 1.08997 * 110.32144 * 241.10248 * 19 4 2 38 38 H 1.08996 * 110.41381 * 142.63179 * 20 19 4 39 39 H 1.09007 * 110.41242 * 265.07073 * 20 19 4 40 40 H 1.09001 * 109.47468 * 290.00034 * 22 21 2 41 41 H 1.08996 * 109.47029 * 50.00191 * 22 21 2 42 42 H 1.08000 * 125.98419 * 359.96829 * 24 23 22 43 43 H 1.07991 * 125.65255 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47318 * 270.11659 * 28 27 26 45 45 H 1.08996 * 109.47509 * 30.12191 * 28 27 26 46 46 H 1.09003 * 109.46919 * 150.12265 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2224 5 1 1.3244 -1.4877 -1.5763 6 7 2.4308 0.1560 -2.2946 7 6 2.4364 -0.2619 -3.5759 8 8 2.1420 -1.4081 -3.8412 9 6 2.8086 0.6951 -4.6789 10 16 2.7232 -0.1587 -6.2726 11 6 3.1915 1.1554 -7.3491 12 1 3.4232 2.1292 -6.9436 13 6 3.2626 0.9391 -8.7183 14 7 3.6129 1.9206 -9.5224 15 14 2.8611 -0.7450 -9.4198 16 1 1.4116 -0.8174 -9.7345 17 1 3.6483 -0.9653 -10.6596 18 1 3.2041 -1.7911 -8.4232 19 6 3.3196 -1.5157 -0.7078 20 6 3.4314 -1.1276 0.7821 21 7 2.0506 -0.7459 1.1745 22 6 2.0592 0.1012 2.3746 23 6 2.3552 -0.7458 3.5854 24 6 3.5609 -0.9423 4.1523 25 7 3.3966 -1.7571 5.2050 26 6 2.1350 -2.0734 5.3117 27 7 1.4497 -1.4594 4.3232 28 6 0.0067 -1.5430 4.0841 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8836 31 1 -0.3633 0.5028 -0.8962 32 1 2.6665 1.0727 -2.0824 33 1 2.1154 1.5363 -4.6794 34 1 3.8227 1.0601 -4.5165 35 1 3.6622 1.7694 -10.4793 36 1 3.1896 -2.5931 -0.8093 37 1 4.2048 -1.1874 -1.2525 38 1 3.7733 -1.9781 1.3719 39 1 4.1083 -0.2820 0.9050 40 1 2.8262 0.8689 2.2720 41 1 1.0845 0.5748 2.4920 42 1 4.4961 -0.5182 3.8178 43 1 1.7089 -2.7160 6.0678 44 1 -0.2033 -2.3797 3.4177 45 1 -0.5104 -1.6944 5.0315 46 1 -0.3397 -0.6171 3.6249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566079980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:44 Heat of formation + Delta-G solvation = 34.648867 kcal Electronic energy + Delta-G solvation = -26506.274222 eV Core-core repulsion = 22751.338457 eV Total energy + Delta-G solvation = -3754.935765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.41209 -40.20547 -38.56893 -34.77651 -34.27919 -32.46181 -32.27822 -31.75928 -29.90125 -28.61632 -27.35244 -25.72323 -25.41799 -25.25566 -21.99553 -21.55229 -20.78026 -20.47619 -19.90731 -17.89441 -17.45294 -16.77739 -16.45028 -16.22457 -15.70649 -15.36335 -15.02861 -14.90600 -14.71652 -14.55332 -14.25875 -13.84477 -13.65122 -13.51628 -13.31663 -13.17197 -13.08560 -12.88644 -12.81310 -12.46959 -12.25436 -11.95625 -11.77743 -11.57496 -11.43617 -11.27884 -11.02537 -10.91071 -10.61933 -10.24465 -9.90605 -9.87598 -9.57240 -9.06647 -9.03186 -8.99529 -8.66123 -8.52528 -6.94134 -6.30839 -4.02798 1.64431 2.44231 2.70696 2.84393 2.91804 3.22824 3.31716 3.48975 3.54897 3.77304 4.13840 4.15794 4.29852 4.31360 4.39621 4.55542 4.59295 4.68621 4.71387 4.79629 4.86540 4.93161 4.99538 5.06835 5.08212 5.09582 5.11025 5.28511 5.36486 5.42361 5.46896 5.48691 5.71016 5.73424 5.85668 5.91445 5.94839 5.97869 6.00348 6.28132 6.39376 6.52985 6.62175 6.84887 7.54646 7.75875 7.92134 8.39472 8.44666 9.15306 10.78314 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033685 B = 0.001932 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.022414 B =14491.508197 C =14615.817864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.054 3.946 3 H 0.060 0.940 4 C 0.149 3.851 5 H 0.101 0.899 6 N -0.732 5.732 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.124 4.124 10 S -0.141 6.141 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 C -0.136 4.136 20 C 0.037 3.963 21 N -0.502 5.502 22 C 0.118 3.882 23 C -0.011 4.011 24 C -0.022 4.022 25 N -0.495 5.495 26 C 0.178 3.822 27 N -0.449 5.449 28 C 0.075 3.925 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.398 0.602 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.271 0.729 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.165 0.835 43 H 0.203 0.797 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.789 -3.076 30.015 30.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.055 4.055 3 H 0.078 0.922 4 C 0.043 3.957 5 H 0.119 0.881 6 N -0.386 5.386 7 C 0.319 3.681 8 O -0.390 6.390 9 C -0.275 4.275 10 S 0.085 5.915 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.516 5.516 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 C -0.176 4.176 20 C -0.091 4.091 21 N -0.226 5.226 22 C -0.010 4.010 23 C -0.126 4.126 24 C -0.171 4.171 25 N -0.212 5.212 26 C -0.104 4.104 27 N -0.132 5.132 28 C -0.068 4.068 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.232 0.768 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.182 0.818 43 H 0.220 0.780 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.124 -5.670 30.005 31.356 hybrid contribution 0.180 2.234 -0.750 2.363 sum -6.945 -3.436 29.255 30.264 Atomic orbital electron populations 1.21723 0.93025 1.02889 1.01723 1.22861 0.96676 0.96037 0.89878 0.92228 1.21606 0.96817 0.91449 0.85815 0.88058 1.46080 1.72013 1.14555 1.05940 1.20285 0.76326 0.88726 0.82804 1.90706 1.46348 1.19178 1.82780 1.23283 1.05096 1.01472 0.97659 1.84803 1.90782 1.19464 0.96427 1.22315 1.53445 0.97681 0.93505 0.89399 1.24718 0.93390 0.97359 0.95873 1.69941 1.45686 1.31762 1.04248 0.86733 0.79608 0.85063 0.80424 1.19211 1.19934 1.15923 1.22782 0.98593 1.01734 0.94453 1.23136 0.89104 1.00750 0.96075 1.65353 1.19112 1.36482 1.01685 1.20549 1.02097 0.92146 0.86257 1.20930 0.90222 1.03262 0.98220 1.22052 0.96813 1.02391 0.95861 1.70281 1.16070 1.15327 1.19546 1.24918 0.88033 1.02019 0.95410 1.45229 1.08501 1.36156 1.23306 1.22017 0.77167 1.04320 1.03248 0.91476 0.92813 0.91598 0.76807 0.88523 0.88493 0.91933 0.90277 0.90366 0.89794 0.93404 0.91832 0.90019 0.81767 0.78004 0.90049 0.89685 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.32 37.16 0.35 -0.62 16 2 C 0.05 0.42 2.58 -66.07 -0.17 0.25 16 3 H 0.06 0.41 7.61 -51.93 -0.40 0.02 16 4 C 0.15 1.58 2.96 -66.54 -0.20 1.39 16 5 H 0.10 1.31 7.27 -51.93 -0.38 0.94 16 6 N -0.73 -8.57 5.03 -52.46 -0.26 -8.84 16 7 C 0.53 8.97 7.85 -10.99 -0.09 8.89 16 8 O -0.52 -10.73 15.51 5.56 0.09 -10.64 16 9 C -0.12 -2.32 6.16 36.00 0.22 -2.10 16 10 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 11 C -0.52 -14.88 10.04 30.94 0.31 -14.57 16 12 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 13 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 14 N -0.88 -26.37 13.97 55.49 0.78 -25.59 16 15 Si 0.86 21.65 27.74 -169.99 -4.71 16.93 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.24 -5.94 6.74 56.52 0.38 -5.55 16 19 C -0.14 -1.41 6.79 -25.35 -0.17 -1.58 16 20 C 0.04 0.31 6.09 -2.20 -0.01 0.30 16 21 N -0.50 -3.89 5.01 -223.58 -1.12 -5.01 16 22 C 0.12 0.78 5.02 -4.97 -0.02 0.76 16 23 C -0.01 -0.09 6.13 -81.60 -0.50 -0.59 16 24 C -0.02 -0.21 11.77 -17.81 -0.21 -0.42 16 25 N -0.49 -5.40 11.25 -14.66 -0.16 -5.56 16 26 C 0.18 1.42 12.56 -90.37 -1.14 0.29 16 27 N -0.45 -3.18 3.15 -121.36 -0.38 -3.57 16 28 C 0.08 0.28 11.01 59.85 0.66 0.93 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.30 7.35 -51.93 -0.38 -0.08 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.40 3.56 8.38 -40.82 -0.34 3.22 16 33 H 0.10 1.67 8.14 -51.92 -0.42 1.24 16 34 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.87 7.95 -51.93 -0.41 0.45 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.36 7.75 -51.93 -0.40 -0.04 16 40 H 0.06 0.38 7.77 -51.93 -0.40 -0.02 16 41 H 0.08 0.45 6.44 -51.93 -0.33 0.12 16 42 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 43 H 0.20 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 46 H 0.08 0.26 7.30 -51.93 -0.38 -0.12 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -35.82 390.34 -10.20 -46.02 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.23 Total: 0.30 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -1.07 Total: -4.40 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -1.16 Total: -48.57 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.82 -10.20 -46.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566079980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.665 kcal (2) G-P(sol) polarization free energy of solvation -35.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds