Wall clock time and date at job start Tue Mar 31 2020 20:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 110.36779 * 2 1 4 4 C 1.54385 * 110.41003 * 237.65025 * 2 1 3 5 5 H 1.08995 * 110.32619 * 336.14440 * 4 2 1 6 6 N 1.46500 * 110.32284 * 98.25615 * 4 2 1 7 7 C 1.34777 * 119.99886 * 204.99976 * 6 4 2 8 8 O 1.21281 * 119.99591 * 359.97438 * 7 6 4 9 9 C 1.50696 * 119.99925 * 179.97438 * 7 6 4 10 10 S 1.81002 * 109.46783 * 179.97438 * 9 7 6 11 11 C 1.76206 * 99.99712 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00369 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99997 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00128 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99726 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47163 * 90.00144 * 15 13 11 17 17 H 1.48503 * 109.47177 * 209.99645 * 15 13 11 18 18 H 1.48501 * 109.47474 * 329.99828 * 15 13 11 19 19 C 1.54266 * 105.05754 * 217.24911 * 4 2 1 20 20 C 1.54375 * 105.06062 * 0.02562 * 19 4 2 21 21 N 1.48556 * 110.50984 * 122.41953 * 2 1 3 22 22 C 1.46901 * 110.99998 * 277.86739 * 21 2 1 23 23 C 1.50701 * 109.47218 * 169.99964 * 22 21 2 24 24 C 1.34677 * 126.58929 * 95.02455 * 23 22 21 25 25 N 1.34127 * 108.02109 * 179.97438 * 24 23 22 26 26 C 1.30502 * 109.25636 * 0.02562 * 25 24 23 27 27 N 1.35046 * 108.69564 * 359.76668 * 26 25 24 28 28 C 1.46506 * 126.39161 * 180.26935 * 27 26 25 29 29 H 1.09003 * 109.47098 * 180.70062 * 1 2 3 30 30 H 1.08995 * 109.47051 * 300.70134 * 1 2 3 31 31 H 1.08997 * 109.46789 * 60.70435 * 1 2 3 32 32 H 0.96999 * 120.00349 * 24.99198 * 6 4 2 33 33 H 1.08998 * 109.47292 * 299.99878 * 9 7 6 34 34 H 1.09000 * 109.47260 * 59.99892 * 9 7 6 35 35 H 0.97005 * 119.99597 * 180.02562 * 14 13 11 36 36 H 1.09001 * 110.32231 * 118.89861 * 19 4 2 37 37 H 1.08997 * 110.32144 * 241.10248 * 19 4 2 38 38 H 1.08996 * 110.41381 * 142.63179 * 20 19 4 39 39 H 1.09007 * 110.41242 * 265.07073 * 20 19 4 40 40 H 1.09001 * 109.47468 * 290.00034 * 22 21 2 41 41 H 1.08996 * 109.47029 * 50.00191 * 22 21 2 42 42 H 1.08000 * 125.98419 * 359.96829 * 24 23 22 43 43 H 1.07991 * 125.65255 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47318 * 270.11659 * 28 27 26 45 45 H 1.08996 * 109.47509 * 30.12191 * 28 27 26 46 46 H 1.09003 * 109.46919 * 150.12265 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2224 5 1 1.3244 -1.4877 -1.5763 6 7 2.4308 0.1560 -2.2946 7 6 2.4364 -0.2619 -3.5759 8 8 2.1420 -1.4081 -3.8412 9 6 2.8086 0.6951 -4.6789 10 16 2.7232 -0.1587 -6.2726 11 6 3.1915 1.1554 -7.3491 12 1 3.4232 2.1292 -6.9436 13 6 3.2626 0.9391 -8.7183 14 7 3.6129 1.9206 -9.5224 15 14 2.8611 -0.7450 -9.4198 16 1 1.4116 -0.8174 -9.7345 17 1 3.6483 -0.9653 -10.6596 18 1 3.2041 -1.7911 -8.4232 19 6 3.3196 -1.5157 -0.7078 20 6 3.4314 -1.1276 0.7821 21 7 2.0506 -0.7459 1.1745 22 6 2.0592 0.1012 2.3746 23 6 2.3552 -0.7458 3.5854 24 6 3.5609 -0.9423 4.1523 25 7 3.3966 -1.7571 5.2050 26 6 2.1350 -2.0734 5.3117 27 7 1.4497 -1.4594 4.3232 28 6 0.0067 -1.5430 4.0841 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8836 31 1 -0.3633 0.5028 -0.8962 32 1 2.6665 1.0727 -2.0824 33 1 2.1154 1.5363 -4.6794 34 1 3.8227 1.0601 -4.5165 35 1 3.6622 1.7694 -10.4793 36 1 3.1896 -2.5931 -0.8093 37 1 4.2048 -1.1874 -1.2525 38 1 3.7733 -1.9781 1.3719 39 1 4.1083 -0.2820 0.9050 40 1 2.8262 0.8689 2.2720 41 1 1.0845 0.5748 2.4920 42 1 4.4961 -0.5182 3.8178 43 1 1.7089 -2.7160 6.0678 44 1 -0.2033 -2.3797 3.4177 45 1 -0.5104 -1.6944 5.0315 46 1 -0.3397 -0.6171 3.6249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566079980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:43 Heat of formation + Delta-G solvation = 9.735812 kcal Electronic energy + Delta-G solvation = -26507.354533 eV Core-core repulsion = 22751.338457 eV Total energy + Delta-G solvation = -3756.016076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.97607 -41.19879 -39.64735 -35.74996 -34.83225 -34.66931 -33.17021 -32.42271 -31.04013 -29.54294 -27.85946 -27.73531 -26.26474 -25.88754 -22.79295 -22.25322 -21.57537 -21.43935 -20.61774 -19.83806 -18.10626 -17.89894 -17.50056 -17.09448 -16.91637 -16.56627 -16.14130 -15.98042 -15.84324 -15.38969 -15.11785 -14.93586 -14.83430 -14.61475 -14.22148 -14.07932 -13.78731 -13.67473 -13.59170 -13.34635 -13.28862 -13.03976 -12.95690 -12.76949 -12.64390 -12.48497 -12.33757 -12.11745 -11.86437 -11.68540 -11.17085 -11.00602 -10.87357 -10.52982 -10.45706 -10.13796 -9.63713 -9.25940 -8.99216 -8.51516 -6.22037 0.98423 1.08434 1.31181 1.46788 1.55620 1.55947 1.99910 2.14660 2.23512 2.26072 2.71032 2.86789 3.04121 3.40505 3.56188 3.85482 3.87314 3.94820 3.99101 4.04913 4.14582 4.20245 4.24209 4.28076 4.42380 4.43717 4.47880 4.50888 4.58071 4.69891 4.77174 4.81269 4.85371 4.87927 5.00086 5.02359 5.09147 5.34255 5.36491 5.46296 5.70793 5.79168 5.82975 5.94259 6.11643 6.35769 6.45428 6.93861 7.16890 7.19625 8.60703 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033685 B = 0.001932 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.022414 B =14491.508197 C =14615.817864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.065 3.935 3 H 0.080 0.920 4 C 0.147 3.853 5 H 0.078 0.922 6 N -0.705 5.705 7 C 0.539 3.461 8 O -0.560 6.560 9 C -0.111 4.111 10 S -0.177 6.177 11 C -0.528 4.528 12 H 0.063 0.937 13 C 0.045 3.955 14 N -0.916 5.916 15 Si 0.914 3.086 16 H -0.262 1.262 17 H -0.260 1.260 18 H -0.237 1.237 19 C -0.135 4.135 20 C 0.047 3.953 21 N -0.506 5.506 22 C 0.122 3.878 23 C -0.011 4.011 24 C -0.048 4.048 25 N -0.539 5.539 26 C 0.175 3.825 27 N -0.449 5.449 28 C 0.070 3.930 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.416 0.584 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.277 0.723 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.167 0.833 43 H 0.232 0.768 44 H 0.079 0.921 45 H 0.108 0.892 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -2.753 31.908 33.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.044 4.044 3 H 0.097 0.903 4 C 0.042 3.958 5 H 0.096 0.904 6 N -0.359 5.359 7 C 0.324 3.676 8 O -0.438 6.438 9 C -0.262 4.262 10 S 0.050 5.950 11 C -0.676 4.676 12 H 0.081 0.919 13 C -0.160 4.160 14 N -0.554 5.554 15 Si 0.736 3.264 16 H -0.187 1.187 17 H -0.184 1.184 18 H -0.161 1.161 19 C -0.174 4.174 20 C -0.081 4.081 21 N -0.231 5.231 22 C -0.006 4.006 23 C -0.127 4.127 24 C -0.197 4.197 25 N -0.258 5.258 26 C -0.107 4.107 27 N -0.131 5.131 28 C -0.071 4.071 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.253 0.747 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.184 0.816 43 H 0.248 0.752 44 H 0.098 0.902 45 H 0.127 0.873 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.376 -5.305 31.938 33.442 hybrid contribution 0.556 2.182 -1.166 2.535 sum -7.820 -3.124 30.772 31.904 Atomic orbital electron populations 1.21702 0.92261 1.02574 1.02544 1.22790 0.97121 0.96324 0.88139 0.90253 1.21683 0.96533 0.91359 0.86267 0.90424 1.45804 1.70044 1.15627 1.04399 1.19933 0.76163 0.87591 0.83897 1.90700 1.48770 1.20753 1.83579 1.23271 1.06787 1.01637 0.94496 1.84744 1.90738 1.19632 0.99914 1.22462 1.52914 0.97741 0.94448 0.91875 1.25562 0.93377 1.00732 0.96375 1.70017 1.46878 1.33672 1.04860 0.85873 0.79723 0.80806 0.80000 1.18672 1.18445 1.16130 1.22708 0.98023 1.00778 0.95909 1.23003 0.89930 1.00923 0.94224 1.65320 1.18525 1.37147 1.02063 1.20606 1.03444 0.91746 0.84831 1.21112 0.90000 1.03162 0.98474 1.22256 0.97803 1.03200 0.96423 1.70226 1.17991 1.16770 1.20817 1.25498 0.87553 1.01763 0.95901 1.45458 1.09688 1.35313 1.22643 1.22264 0.75304 1.04795 1.04759 0.92466 0.90571 0.92130 0.74663 0.86696 0.86862 0.91400 0.91830 0.91065 0.90798 0.92034 0.90811 0.88245 0.81589 0.75168 0.90192 0.87305 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.32 71.98 0.67 -0.85 16 2 C 0.06 0.82 2.58 45.07 0.12 0.94 16 3 H 0.08 0.75 7.61 -2.39 -0.02 0.73 16 4 C 0.15 2.91 2.96 45.89 0.14 3.04 16 5 H 0.08 1.98 7.27 -2.39 -0.02 1.96 16 6 N -0.70 -15.05 5.03 -438.29 -2.20 -17.25 16 7 C 0.54 17.48 7.85 87.66 0.69 18.17 16 8 O -0.56 -23.19 15.51 -3.03 -0.05 -23.24 16 9 C -0.11 -3.99 6.16 71.23 0.44 -3.55 16 10 S -0.18 -8.78 18.55 -56.49 -1.05 -9.83 16 11 C -0.53 -30.37 10.04 67.95 0.68 -29.68 16 12 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 13 C 0.04 2.62 5.50 84.86 0.47 3.09 16 14 N -0.92 -55.41 13.97 21.65 0.30 -55.10 16 15 Si 0.91 44.77 27.74 68.60 1.90 46.68 16 16 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 19 C -0.13 -2.67 6.79 31.49 0.21 -2.46 16 20 C 0.05 0.72 6.09 86.45 0.53 1.24 16 21 N -0.51 -6.59 5.01 -861.28 -4.32 -10.91 16 22 C 0.12 1.24 5.02 85.56 0.43 1.67 16 23 C -0.01 -0.16 6.13 40.96 0.25 0.09 16 24 C -0.05 -0.90 11.77 83.53 0.98 0.08 16 25 N -0.54 -11.55 11.25 -200.31 -2.25 -13.81 16 26 C 0.18 2.55 12.56 180.26 2.26 4.81 16 27 N -0.45 -5.42 3.15 -537.88 -1.70 -7.12 16 28 C 0.07 0.31 11.01 127.77 1.41 1.72 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.55 7.35 -2.39 -0.02 0.53 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.42 6.08 8.38 -92.71 -0.78 5.30 16 33 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 34 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 35 H 0.28 15.48 8.31 -92.70 -0.77 14.71 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.51 7.95 -2.39 -0.02 1.49 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 0.79 7.75 -2.38 -0.02 0.77 16 40 H 0.07 0.64 7.77 -2.39 -0.02 0.62 16 41 H 0.10 0.69 6.44 -2.39 -0.02 0.67 16 42 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.23 1.54 8.06 -2.92 -0.02 1.52 16 44 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 46 H 0.09 0.24 7.30 -2.39 -0.02 0.23 16 Total: -1.00 -79.32 390.34 0.08 -79.24 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.17 Total: 13.03 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 9.27 Total: -1.69 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -10.17 Total: -104.19 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.24 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.68 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.83 kcal Total: -79.32 0.08 -79.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566079980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.972 kcal (2) G-P(sol) polarization free energy of solvation -79.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds