Wall clock time and date at job start Tue Mar 31 2020 21:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47238 * 2 1 4 4 C 1.50700 * 109.47371 * 119.99871 * 2 1 3 5 5 O 1.21284 * 120.00103 * 119.99560 * 4 2 1 6 6 N 1.34781 * 119.99975 * 299.99960 * 4 2 1 7 7 C 1.46498 * 119.99856 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.46772 * 180.02562 * 7 6 4 9 9 H 1.09001 * 110.64049 * 51.86238 * 8 7 6 10 10 C 1.55161 * 110.71792 * 175.00085 * 8 7 6 11 11 C 1.54906 * 101.58234 * 154.04027 * 10 8 7 12 12 N 1.47429 * 104.83197 * 322.99300 * 11 10 8 13 13 C 1.36932 * 125.64423 * 203.86284 * 12 11 10 14 14 H 1.08001 * 119.99878 * 161.55253 * 13 12 11 15 15 C 1.38813 * 120.00440 * 341.54812 * 13 12 11 16 16 N 1.31620 * 120.00118 * 157.51485 * 15 13 12 17 17 Si 1.86799 * 119.99872 * 337.52274 * 15 13 12 18 18 H 1.48500 * 109.47046 * 84.53269 * 17 15 13 19 19 H 1.48499 * 109.47121 * 204.53230 * 17 15 13 20 20 H 1.48503 * 109.46914 * 324.53237 * 17 15 13 21 21 C 1.47022 * 108.70162 * 24.12376 * 12 11 10 22 22 C 1.50696 * 109.47254 * 239.99839 * 2 1 3 23 23 C 1.38259 * 119.96502 * 119.99983 * 22 2 1 24 24 C 1.38216 * 120.06885 * 180.02562 * 23 22 2 25 25 C 1.38409 * 120.00166 * 359.97438 * 24 23 22 26 26 F 1.35105 * 120.03262 * 180.02562 * 25 24 23 27 27 C 1.38644 * 119.92811 * 0.02562 * 25 24 23 28 28 F 1.35109 * 120.03422 * 179.97438 * 27 25 24 29 29 C 1.38213 * 119.96727 * 299.72882 * 22 2 1 30 30 H 1.09010 * 109.47025 * 300.00025 * 1 2 3 31 31 H 1.09004 * 109.47524 * 59.99895 * 1 2 3 32 32 H 1.08994 * 109.47572 * 180.02562 * 1 2 3 33 33 H 0.96990 * 119.99656 * 0.02562 * 6 4 2 34 34 H 1.08997 * 109.47093 * 59.99674 * 7 6 4 35 35 H 1.09004 * 109.47148 * 300.00107 * 7 6 4 36 36 H 1.09003 * 111.00301 * 35.96301 * 10 8 7 37 37 H 1.09003 * 111.03613 * 272.12859 * 10 8 7 38 38 H 1.08994 * 110.36745 * 204.15164 * 11 10 8 39 39 H 1.09004 * 110.36572 * 81.83087 * 11 10 8 40 40 H 0.97002 * 119.99785 * 179.97438 * 16 15 13 41 41 H 1.09005 * 109.87768 * 118.36090 * 21 12 11 42 42 H 1.08999 * 109.88048 * 239.52247 * 21 12 11 43 43 H 1.07994 * 119.96563 * 359.97438 * 23 22 2 44 44 H 1.08004 * 119.99869 * 179.97438 * 24 23 22 45 45 H 1.08003 * 119.99600 * 359.97438 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1947 -0.9408 3.6507 8 6 1.6843 -0.2198 4.9000 9 1 0.6042 -0.0818 4.8496 10 6 2.0791 -0.9981 6.1828 11 6 2.1079 0.1356 7.2380 12 7 2.6527 1.3037 6.5222 13 6 3.2844 2.3714 7.1018 14 1 3.9035 3.0228 6.5028 15 6 3.1290 2.6167 8.4592 16 7 4.0306 3.3230 9.1078 17 14 1.6404 1.9443 9.3654 18 1 1.9062 0.5445 9.7837 19 1 1.3734 2.7773 10.5654 20 1 0.4580 1.9765 8.4674 21 6 2.3999 1.1350 5.0837 22 6 2.0323 -0.7104 -1.2304 23 6 2.8271 -0.0378 -2.1400 24 6 3.2886 -0.6872 -3.2695 25 6 2.9556 -2.0123 -3.4907 26 9 3.4068 -2.6477 -4.5943 27 6 2.1585 -2.6867 -2.5785 28 9 1.8317 -3.9801 -2.7925 29 6 1.7026 -2.0353 -1.4456 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.1488 0.5385 2.5435 34 1 3.2846 -0.9412 3.6508 35 1 1.8309 -1.9683 3.6506 36 1 3.0622 -1.4564 6.0747 37 1 1.3271 -1.7463 6.4336 38 1 2.7576 -0.1366 8.0697 39 1 1.1001 0.3463 7.5961 40 1 3.9218 3.4947 10.0563 41 1 1.7632 1.9426 4.7221 42 1 3.3441 1.1325 4.5392 43 1 3.0869 0.9962 -1.9682 44 1 3.9091 -0.1605 -3.9795 45 1 1.0856 -2.5610 -0.7319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567418993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:31 Heat of formation + Delta-G solvation = -81.625089 kcal Electronic energy + Delta-G solvation = -28545.738146 eV Core-core repulsion = 24199.627227 eV Total energy + Delta-G solvation = -4346.110920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.72862 -48.80453 -40.62288 -39.00872 -37.98446 -34.88876 -34.42907 -32.56567 -31.17998 -30.55251 -29.54006 -28.62445 -26.16899 -25.03080 -23.71559 -23.35305 -22.18623 -21.16485 -20.22117 -19.76270 -18.27642 -17.80505 -17.44341 -16.98119 -16.72749 -16.52482 -16.17685 -15.74525 -15.22726 -15.21914 -15.04556 -14.80293 -14.51628 -14.41033 -14.04252 -13.81281 -13.59513 -13.31775 -13.01158 -12.92563 -12.70103 -12.40690 -12.29783 -12.20131 -12.02454 -11.72426 -11.62820 -11.53598 -11.30816 -11.06396 -10.64625 -10.59218 -10.14990 -10.04926 -9.86832 -9.47446 -9.38376 -9.13915 -8.97771 -8.71774 -7.08611 -5.98261 -3.28855 0.52890 0.67466 2.46284 2.82806 3.20004 3.31259 3.44153 3.45198 3.46415 3.94305 4.05719 4.16325 4.47582 4.51127 4.57005 4.66764 4.74030 4.78534 4.86278 4.94703 5.03644 5.17182 5.17903 5.30005 5.39160 5.42919 5.48341 5.52230 5.56275 5.62800 5.65000 5.74662 5.79963 5.97146 5.97910 6.05499 6.22695 6.30220 6.38687 6.44923 6.56906 6.67387 6.71096 7.35643 7.67516 8.06081 8.27662 8.79663 9.65166 10.13870 11.17855 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.002016 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.450708 B =13886.138778 C =14183.500364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 H 0.114 0.886 4 C 0.515 3.485 5 O -0.534 6.534 6 N -0.722 5.722 7 C 0.132 3.868 8 C -0.116 4.116 9 H 0.080 0.920 10 C -0.122 4.122 11 C 0.110 3.890 12 N -0.609 5.609 13 C -0.244 4.244 14 H 0.091 0.909 15 C 0.021 3.979 16 N -0.908 5.908 17 Si 0.884 3.116 18 H -0.285 1.285 19 H -0.302 1.302 20 H -0.278 1.278 21 C 0.141 3.859 22 C -0.047 4.047 23 C -0.091 4.091 24 C -0.127 4.127 25 C 0.065 3.935 26 F -0.131 7.131 27 C 0.066 3.934 28 F -0.130 7.130 29 C -0.090 4.090 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.402 0.598 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.025 0.975 40 H 0.263 0.737 41 H 0.028 0.972 42 H 0.034 0.966 43 H 0.142 0.858 44 H 0.147 0.853 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.332 -8.075 -24.095 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.094 4.094 3 H 0.132 0.868 4 C 0.300 3.700 5 O -0.410 6.410 6 N -0.374 5.374 7 C 0.009 3.991 8 C -0.136 4.136 9 H 0.098 0.902 10 C -0.161 4.161 11 C -0.015 4.015 12 N -0.336 5.336 13 C -0.371 4.371 14 H 0.109 0.891 15 C -0.177 4.177 16 N -0.551 5.551 17 Si 0.715 3.285 18 H -0.212 1.212 19 H -0.230 1.230 20 H -0.204 1.204 21 C 0.015 3.985 22 C -0.048 4.048 23 C -0.109 4.109 24 C -0.146 4.146 25 C 0.045 3.955 26 F -0.109 7.109 27 C 0.046 3.954 28 F -0.108 7.108 29 C -0.109 4.109 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.237 0.763 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.160 0.840 44 H 0.164 0.836 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.706 -8.709 -24.017 26.684 hybrid contribution -1.035 -0.227 0.526 1.183 sum -8.741 -8.936 -23.491 26.610 Atomic orbital electron populations 1.21837 0.91447 1.03342 1.03502 1.20336 0.98127 1.00674 0.90312 0.86811 1.20343 0.80475 0.84763 0.84443 1.90749 1.37443 1.26170 1.86650 1.46026 1.53562 1.32192 1.05597 1.21435 0.99716 0.95614 0.82336 1.22468 1.00288 0.97019 0.93781 0.90171 1.22719 1.01466 0.97379 0.94495 1.21962 0.97195 0.87079 0.95273 1.44782 1.68305 1.19377 1.01141 1.18628 1.21357 1.04225 0.92849 0.89111 1.25010 0.98311 0.98184 0.96223 1.69849 1.33141 1.43149 1.08999 0.86955 0.85265 0.77604 0.78709 1.21189 1.23041 1.20361 1.21399 0.96772 0.93054 0.87246 1.19215 0.97257 0.93142 0.95195 1.20983 0.96281 1.00713 0.92926 1.21024 1.01847 0.92114 0.99601 1.17716 1.00066 0.92176 0.85540 1.91527 1.87333 1.81905 1.50174 1.17625 1.01232 0.79936 0.96597 1.91533 1.91000 1.33534 1.94747 1.20842 1.00411 0.94640 0.95032 0.91075 0.90854 0.91706 0.76310 0.90917 0.91456 0.90784 0.91371 0.92185 0.95716 0.92680 0.95396 0.94762 0.84032 0.83552 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 8.90 37.15 0.33 -0.41 16 2 C -0.07 -0.52 2.90 -92.93 -0.27 -0.79 16 3 H 0.11 0.57 7.87 -51.93 -0.41 0.16 16 4 C 0.51 5.47 7.02 -10.98 -0.08 5.40 16 5 O -0.53 -7.82 15.09 5.55 0.08 -7.74 16 6 N -0.72 -7.19 5.36 -60.29 -0.32 -7.51 16 7 C 0.13 1.60 5.02 -4.04 -0.02 1.58 16 8 C -0.12 -1.60 2.95 -88.79 -0.26 -1.87 16 9 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 10 C -0.12 -1.87 6.53 -24.58 -0.16 -2.03 16 11 C 0.11 2.29 4.69 -2.53 -0.01 2.28 16 12 N -0.61 -14.20 3.21 -170.08 -0.55 -14.75 16 13 C -0.24 -6.79 10.57 -15.06 -0.16 -6.95 16 14 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 15 C 0.02 0.61 5.43 -17.43 -0.09 0.52 16 16 N -0.91 -27.73 13.97 55.49 0.78 -26.95 16 17 Si 0.88 22.19 24.27 -169.99 -4.13 18.06 16 18 H -0.28 -6.87 6.49 56.52 0.37 -6.51 16 19 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 20 H -0.28 -6.82 6.66 56.52 0.38 -6.45 16 21 C 0.14 2.53 6.76 -3.07 -0.02 2.51 16 22 C -0.05 -0.39 4.40 -104.63 -0.46 -0.85 16 23 C -0.09 -0.64 9.67 -39.58 -0.38 -1.02 16 24 C -0.13 -0.96 10.02 -39.53 -0.40 -1.36 16 25 C 0.07 0.65 7.31 -39.37 -0.29 0.37 16 26 F -0.13 -1.43 17.18 2.25 0.04 -1.39 16 27 C 0.07 0.72 7.31 -39.37 -0.29 0.43 16 28 F -0.13 -1.56 17.18 2.25 0.04 -1.52 16 29 C -0.09 -0.88 7.90 -39.53 -0.31 -1.20 16 30 H 0.07 0.30 7.56 -51.92 -0.39 -0.09 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.37 7.40 -51.93 -0.38 -0.01 16 33 H 0.40 3.14 7.89 -40.82 -0.32 2.81 16 34 H 0.07 1.01 7.95 -51.93 -0.41 0.60 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.35 6.66 -51.93 -0.35 1.01 16 39 H 0.03 0.54 5.56 -51.93 -0.29 0.25 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.03 0.63 7.70 -51.93 -0.40 0.23 16 43 H 0.14 0.62 7.94 -52.49 -0.42 0.20 16 44 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 45 H 0.14 1.36 7.51 -52.48 -0.39 0.97 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -34.12 371.14 -7.68 -41.79 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.34 Total: -2.19 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.87 Total: -3.40 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.09 Total: -49.21 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.08 Total: -7.74 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.08 Total: -2.91 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.13 Total: 18.06 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.12 -7.68 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567418993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.832 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds