Wall clock time and date at job start Tue Mar 31 2020 21:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47238 * 2 1 4 4 C 1.50700 * 109.47371 * 119.99871 * 2 1 3 5 5 O 1.21284 * 120.00103 * 119.99560 * 4 2 1 6 6 N 1.34781 * 119.99975 * 299.99960 * 4 2 1 7 7 C 1.46498 * 119.99856 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.46772 * 180.02562 * 7 6 4 9 9 H 1.09001 * 110.64049 * 51.86238 * 8 7 6 10 10 C 1.55161 * 110.71792 * 175.00085 * 8 7 6 11 11 C 1.54906 * 101.58234 * 154.04027 * 10 8 7 12 12 N 1.47429 * 104.83197 * 322.99300 * 11 10 8 13 13 C 1.36932 * 125.64423 * 203.86284 * 12 11 10 14 14 H 1.08001 * 119.99878 * 161.55253 * 13 12 11 15 15 C 1.38813 * 120.00440 * 341.54812 * 13 12 11 16 16 N 1.31620 * 120.00118 * 157.51485 * 15 13 12 17 17 Si 1.86799 * 119.99872 * 337.52274 * 15 13 12 18 18 H 1.48500 * 109.47046 * 84.53269 * 17 15 13 19 19 H 1.48499 * 109.47121 * 204.53230 * 17 15 13 20 20 H 1.48503 * 109.46914 * 324.53237 * 17 15 13 21 21 C 1.47022 * 108.70162 * 24.12376 * 12 11 10 22 22 C 1.50696 * 109.47254 * 239.99839 * 2 1 3 23 23 C 1.38259 * 119.96502 * 119.99983 * 22 2 1 24 24 C 1.38216 * 120.06885 * 180.02562 * 23 22 2 25 25 C 1.38409 * 120.00166 * 359.97438 * 24 23 22 26 26 F 1.35105 * 120.03262 * 180.02562 * 25 24 23 27 27 C 1.38644 * 119.92811 * 0.02562 * 25 24 23 28 28 F 1.35109 * 120.03422 * 179.97438 * 27 25 24 29 29 C 1.38213 * 119.96727 * 299.72882 * 22 2 1 30 30 H 1.09010 * 109.47025 * 300.00025 * 1 2 3 31 31 H 1.09004 * 109.47524 * 59.99895 * 1 2 3 32 32 H 1.08994 * 109.47572 * 180.02562 * 1 2 3 33 33 H 0.96990 * 119.99656 * 0.02562 * 6 4 2 34 34 H 1.08997 * 109.47093 * 59.99674 * 7 6 4 35 35 H 1.09004 * 109.47148 * 300.00107 * 7 6 4 36 36 H 1.09003 * 111.00301 * 35.96301 * 10 8 7 37 37 H 1.09003 * 111.03613 * 272.12859 * 10 8 7 38 38 H 1.08994 * 110.36745 * 204.15164 * 11 10 8 39 39 H 1.09004 * 110.36572 * 81.83087 * 11 10 8 40 40 H 0.97002 * 119.99785 * 179.97438 * 16 15 13 41 41 H 1.09005 * 109.87768 * 118.36090 * 21 12 11 42 42 H 1.08999 * 109.88048 * 239.52247 * 21 12 11 43 43 H 1.07994 * 119.96563 * 359.97438 * 23 22 2 44 44 H 1.08004 * 119.99869 * 179.97438 * 24 23 22 45 45 H 1.08003 * 119.99600 * 359.97438 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1947 -0.9408 3.6507 8 6 1.6843 -0.2198 4.9000 9 1 0.6042 -0.0818 4.8496 10 6 2.0791 -0.9981 6.1828 11 6 2.1079 0.1356 7.2380 12 7 2.6527 1.3037 6.5222 13 6 3.2844 2.3714 7.1018 14 1 3.9035 3.0228 6.5028 15 6 3.1290 2.6167 8.4592 16 7 4.0306 3.3230 9.1078 17 14 1.6404 1.9443 9.3654 18 1 1.9062 0.5445 9.7837 19 1 1.3734 2.7773 10.5654 20 1 0.4580 1.9765 8.4674 21 6 2.3999 1.1350 5.0837 22 6 2.0323 -0.7104 -1.2304 23 6 2.8271 -0.0378 -2.1400 24 6 3.2886 -0.6872 -3.2695 25 6 2.9556 -2.0123 -3.4907 26 9 3.4068 -2.6477 -4.5943 27 6 2.1585 -2.6867 -2.5785 28 9 1.8317 -3.9801 -2.7925 29 6 1.7026 -2.0353 -1.4456 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.1488 0.5385 2.5435 34 1 3.2846 -0.9412 3.6508 35 1 1.8309 -1.9683 3.6506 36 1 3.0622 -1.4564 6.0747 37 1 1.3271 -1.7463 6.4336 38 1 2.7576 -0.1366 8.0697 39 1 1.1001 0.3463 7.5961 40 1 3.9218 3.4947 10.0563 41 1 1.7632 1.9426 4.7221 42 1 3.3441 1.1325 4.5392 43 1 3.0869 0.9962 -1.9682 44 1 3.9091 -0.1605 -3.9795 45 1 1.0856 -2.5610 -0.7319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567418993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:30 Heat of formation + Delta-G solvation = -104.005601 kcal Electronic energy + Delta-G solvation = -28546.708638 eV Core-core repulsion = 24199.627227 eV Total energy + Delta-G solvation = -4347.081412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.52877 -49.61620 -41.38345 -39.92317 -39.22858 -36.05770 -35.10355 -34.34392 -32.17072 -31.80110 -30.42957 -29.81478 -27.55260 -25.86166 -24.90871 -24.16034 -23.03429 -22.67808 -21.33124 -20.81873 -19.05719 -18.89121 -18.46914 -18.17595 -17.56107 -17.34265 -17.21379 -17.12343 -16.65946 -16.05991 -16.04226 -15.58821 -15.46555 -15.24498 -15.19517 -14.96474 -14.70907 -14.51169 -14.11310 -13.91310 -13.69419 -13.56262 -13.32352 -13.24169 -13.00957 -12.95772 -12.70992 -12.62820 -12.25492 -12.22401 -12.12087 -11.96827 -11.79701 -11.60585 -11.35329 -10.80774 -10.75007 -10.05792 -10.01836 -9.67376 -9.03302 -8.17550 -5.43776 -0.15253 0.03114 1.32047 1.39591 1.49022 1.67279 2.10210 2.42555 2.49276 2.77726 3.04429 3.26413 3.33003 3.40707 3.58620 3.70256 3.85131 3.89818 3.91894 4.01345 4.09442 4.22290 4.37582 4.40782 4.41714 4.58752 4.68457 4.79809 4.82017 4.84807 4.85997 4.86963 4.92073 4.97900 5.04541 5.05699 5.09221 5.21419 5.28839 5.37502 5.40012 5.51344 5.69665 5.73465 6.10792 6.59760 6.78209 7.28744 7.55519 8.12115 9.02403 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.002016 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.450708 B =13886.138778 C =14183.500364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 H 0.144 0.856 4 C 0.513 3.487 5 O -0.579 6.579 6 N -0.714 5.714 7 C 0.142 3.858 8 C -0.095 4.095 9 H 0.107 0.893 10 C -0.112 4.112 11 C 0.099 3.901 12 N -0.630 5.630 13 C -0.235 4.235 14 H 0.057 0.943 15 C -0.041 4.041 16 N -0.958 5.958 17 Si 0.950 3.050 18 H -0.271 1.271 19 H -0.310 1.310 20 H -0.264 1.264 21 C 0.135 3.865 22 C -0.053 4.053 23 C -0.082 4.082 24 C -0.120 4.120 25 C 0.046 3.954 26 F -0.142 7.142 27 C 0.039 3.961 28 F -0.146 7.146 29 C -0.099 4.099 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.416 0.584 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.035 0.965 39 H 0.028 0.972 40 H 0.262 0.738 41 H 0.039 0.961 42 H 0.026 0.974 43 H 0.178 0.822 44 H 0.173 0.827 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.500 -7.968 -25.219 28.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 H 0.162 0.838 4 C 0.300 3.700 5 O -0.458 6.458 6 N -0.366 5.366 7 C 0.018 3.982 8 C -0.114 4.114 9 H 0.125 0.875 10 C -0.151 4.151 11 C -0.025 4.025 12 N -0.358 5.358 13 C -0.364 4.364 14 H 0.075 0.925 15 C -0.236 4.236 16 N -0.605 5.605 17 Si 0.778 3.222 18 H -0.197 1.197 19 H -0.239 1.239 20 H -0.189 1.189 21 C 0.011 3.989 22 C -0.053 4.053 23 C -0.100 4.100 24 C -0.139 4.139 25 C 0.026 3.974 26 F -0.121 7.121 27 C 0.019 3.981 28 F -0.124 7.124 29 C -0.118 4.118 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.253 0.747 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.123 0.877 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.195 0.805 44 H 0.191 0.809 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.918 -8.614 -25.179 28.400 hybrid contribution -0.269 -0.220 0.803 0.875 sum -10.187 -8.834 -24.377 27.857 Atomic orbital electron populations 1.21871 0.89776 1.03258 1.05041 1.20403 0.99363 1.01246 0.87567 0.83828 1.20968 0.79510 0.84179 0.85351 1.90742 1.39528 1.28264 1.87280 1.45919 1.53385 1.32421 1.04906 1.21176 0.98490 0.96054 0.82464 1.22337 1.01259 0.94045 0.93741 0.87456 1.22694 1.02893 0.96322 0.93187 1.22102 0.96236 0.87973 0.96206 1.44921 1.68224 1.18966 1.03640 1.18578 1.20444 1.04654 0.92704 0.92521 1.25690 1.00875 0.99658 0.97332 1.69986 1.35153 1.46126 1.09266 0.85894 0.81751 0.77372 0.77135 1.19692 1.23907 1.18902 1.21596 0.97192 0.96055 0.84059 1.19488 0.97218 0.92622 0.96008 1.21413 0.94634 1.02107 0.91818 1.21382 1.01319 0.90976 1.00213 1.18033 1.00748 0.93268 0.85386 1.91491 1.87542 1.82334 1.50705 1.17936 1.02714 0.79678 0.97782 1.91479 1.91338 1.34673 1.94955 1.20902 1.00735 0.95552 0.94601 0.89588 0.89273 0.92673 0.74720 0.93012 0.90554 0.90882 0.87743 0.94658 0.95415 0.92939 0.94263 0.95593 0.80509 0.80928 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.90 71.98 0.64 -0.32 16 2 C -0.06 -0.69 2.90 -12.29 -0.04 -0.73 16 3 H 0.14 0.72 7.87 -2.38 -0.02 0.70 16 4 C 0.51 9.63 7.02 87.66 0.62 10.24 16 5 O -0.58 -16.29 15.09 -3.04 -0.05 -16.33 16 6 N -0.71 -11.89 5.36 -463.05 -2.48 -14.37 16 7 C 0.14 3.03 5.02 86.38 0.43 3.47 16 8 C -0.09 -2.26 2.95 -9.61 -0.03 -2.29 16 9 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 10 C -0.11 -3.08 6.53 31.99 0.21 -2.87 16 11 C 0.10 3.92 4.69 86.85 0.41 4.33 16 12 N -0.63 -28.81 3.21 -692.00 -2.22 -31.03 16 13 C -0.24 -13.32 10.57 84.03 0.89 -12.43 16 14 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 15 C -0.04 -2.41 5.43 84.86 0.46 -1.95 16 16 N -0.96 -60.39 13.97 21.65 0.30 -60.09 16 17 Si 0.95 45.96 24.27 68.60 1.66 47.62 16 18 H -0.27 -12.35 6.49 99.48 0.65 -11.70 16 19 H -0.31 -15.28 7.11 99.48 0.71 -14.58 16 20 H -0.26 -12.03 6.66 99.48 0.66 -11.36 16 21 C 0.14 4.58 6.76 86.73 0.59 5.16 16 22 C -0.05 -0.75 4.40 -19.87 -0.09 -0.84 16 23 C -0.08 -0.88 9.67 22.27 0.22 -0.66 16 24 C -0.12 -1.56 10.02 22.31 0.22 -1.34 16 25 C 0.05 0.90 7.31 22.41 0.16 1.06 16 26 F -0.14 -3.15 17.18 44.97 0.77 -2.38 16 27 C 0.04 0.86 7.31 22.41 0.16 1.02 16 28 F -0.15 -3.71 17.18 44.97 0.77 -2.94 16 29 C -0.10 -1.90 7.90 22.30 0.18 -1.72 16 30 H 0.09 0.34 7.56 -2.38 -0.02 0.33 16 31 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.05 0.50 7.40 -2.39 -0.02 0.48 16 33 H 0.42 4.73 7.89 -92.72 -0.73 3.99 16 34 H 0.05 1.35 7.95 -2.39 -0.02 1.33 16 35 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.07 2.03 8.05 -2.39 -0.02 2.01 16 37 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.04 1.55 6.66 -2.39 -0.02 1.53 16 39 H 0.03 1.10 5.56 -2.38 -0.01 1.09 16 40 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 41 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.03 0.92 7.70 -2.39 -0.02 0.90 16 43 H 0.18 0.64 7.94 -2.91 -0.02 0.61 16 44 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.14 2.66 7.51 -2.91 -0.02 2.64 16 Total: -1.00 -78.44 371.14 3.98 -74.46 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 0.18 Total: 4.92 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 5.03 Total: 0.13 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -4.40 Total: -105.49 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.05 Total: -16.33 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 1.55 Total: -5.31 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.66 Total: 47.62 kcal Total: -78.44 3.98 -74.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567418993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.544 kcal (2) G-P(sol) polarization free energy of solvation -78.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds