Wall clock time and date at job start Tue Mar 31 2020 20:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.29341 * 2 1 4 4 C 1.54010 * 110.32721 * 237.86823 * 2 1 3 5 5 N 1.47483 * 107.08357 * 242.41145 * 4 2 1 6 6 C 1.34770 * 127.03465 * 154.51332 * 5 4 2 7 7 O 1.21357 * 119.99849 * 0.02562 * 6 5 4 8 8 C 1.49455 * 120.00299 * 180.28043 * 6 5 4 9 9 O 1.21347 * 119.99803 * 6.39480 * 8 6 5 10 10 N 1.34774 * 119.99883 * 186.40378 * 8 6 5 11 11 C 1.46923 * 120.63296 * 8.54896 * 10 8 6 12 12 C 1.53190 * 108.77392 * 126.37560 * 11 10 8 13 13 C 1.53035 * 109.31888 * 54.63279 * 12 11 10 14 14 C 1.53042 * 109.53554 * 298.63930 * 13 12 11 15 15 H 1.09004 * 109.49833 * 301.37258 * 14 13 12 16 16 C 1.50700 * 109.49687 * 181.31456 * 14 13 12 17 17 H 1.08005 * 119.99995 * 359.97438 * 16 14 13 18 18 C 1.37879 * 119.99950 * 179.97438 * 16 14 13 19 19 N 1.31508 * 120.00214 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99925 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46990 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47101 * 120.00014 * 20 18 16 23 23 H 1.48499 * 109.47113 * 240.00494 * 20 18 16 24 24 C 1.46927 * 120.62594 * 188.27267 * 10 8 6 25 25 C 1.48123 * 105.93063 * 334.78196 * 5 4 2 26 26 C 1.54592 * 103.42627 * 39.02088 * 25 5 4 27 27 H 1.09000 * 110.57215 * 81.17262 * 26 25 5 28 28 C 1.50698 * 110.83133 * 204.44866 * 26 25 5 29 29 O 1.20829 * 119.99803 * 113.56611 * 28 26 25 30 30 O 1.34231 * 120.00306 * 293.55937 * 28 26 25 31 31 H 1.08997 * 109.47085 * 180.68189 * 1 2 3 32 32 H 1.09006 * 109.47160 * 300.68114 * 1 2 3 33 33 H 1.09001 * 109.47290 * 60.67872 * 1 2 3 34 34 H 1.08996 * 109.91325 * 123.04657 * 4 2 1 35 35 H 1.08999 * 110.07112 * 1.86259 * 4 2 1 36 36 H 1.09007 * 109.58392 * 246.15688 * 11 10 8 37 37 H 1.08995 * 109.58784 * 6.58505 * 11 10 8 38 38 H 1.09004 * 109.49816 * 174.58802 * 12 11 10 39 39 H 1.09001 * 109.49292 * 294.64727 * 12 11 10 40 40 H 1.08999 * 109.45975 * 58.65269 * 13 12 11 41 41 H 1.08999 * 109.46565 * 178.61510 * 13 12 11 42 42 H 0.97001 * 120.00207 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.59164 * 353.41924 * 24 10 8 44 44 H 1.09004 * 109.58475 * 113.84291 * 24 10 8 45 45 H 1.08997 * 110.65993 * 157.50934 * 25 5 4 46 46 H 1.09007 * 110.65674 * 280.61668 * 25 5 4 47 47 H 0.96697 * 117.00272 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2230 5 7 2.8277 -1.9217 -0.7104 6 6 3.0613 -3.0872 -1.3455 7 8 2.6235 -3.2677 -2.4628 8 6 3.8548 -4.1595 -0.6715 9 8 4.1896 -4.0289 0.4875 10 7 4.1986 -5.2714 -1.3511 11 6 3.9665 -5.3657 -2.7989 12 6 5.2835 -5.7402 -3.4859 13 6 5.8387 -7.0185 -2.8538 14 6 6.1205 -6.7748 -1.3694 15 1 6.8319 -5.9558 -1.2638 16 6 6.6972 -8.0243 -0.7552 17 1 6.8476 -8.9047 -1.3624 18 6 7.0330 -8.0434 0.5820 19 7 6.8495 -6.9716 1.3215 20 14 7.7473 -9.5924 1.3435 21 1 7.8526 -10.6505 0.3068 22 1 9.0968 -9.2988 1.8891 23 1 6.8609 -10.0593 2.4396 24 6 4.8181 -6.4100 -0.6593 25 6 3.2788 -1.5397 0.6478 26 6 2.0671 -0.7735 1.2262 27 1 1.3175 -1.4700 1.6020 28 6 2.5030 0.1793 2.3093 29 8 2.4035 1.3717 2.1409 30 8 3.0015 -0.2965 3.4612 31 1 -0.3633 -1.0276 0.0122 32 1 -0.3634 0.5244 0.8839 33 1 -0.3634 0.5033 -0.8960 34 1 2.7180 -0.1226 -1.8103 35 1 1.2354 -1.1156 -1.8387 36 1 3.2186 -6.1328 -2.9998 37 1 3.6178 -4.4045 -3.1764 38 1 5.1050 -5.9074 -4.5482 39 1 6.0021 -4.9302 -3.3609 40 1 5.1090 -7.8215 -2.9577 41 1 6.7632 -7.3009 -3.3574 42 1 7.0853 -6.9852 2.2623 43 1 5.0310 -6.1376 0.3744 44 1 4.1410 -7.2639 -0.6823 45 1 3.4935 -2.4258 1.2451 46 1 4.1524 -0.8898 0.5942 47 1 3.2672 0.3533 4.1262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599848809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:52 Heat of formation + Delta-G solvation = -141.754220 kcal Electronic energy + Delta-G solvation = -30675.643319 eV Core-core repulsion = 26438.012520 eV Total energy + Delta-G solvation = -4237.630799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.15173 -40.33439 -38.79039 -37.63314 -36.85143 -36.32027 -33.48886 -32.94893 -31.76508 -30.63792 -29.79595 -27.48519 -25.63391 -25.14142 -24.63424 -22.80489 -21.94756 -21.62473 -20.04932 -19.69194 -18.64330 -18.38222 -17.48431 -16.87578 -16.78946 -16.22006 -15.94697 -15.61829 -15.43711 -14.66977 -14.51999 -14.16412 -14.05847 -13.77779 -13.71918 -13.37050 -13.35573 -13.16334 -12.89849 -12.63722 -12.46683 -12.40916 -12.18846 -11.85540 -11.81861 -11.52098 -11.43931 -11.27482 -11.03720 -10.96889 -10.83447 -10.64364 -10.46349 -10.29837 -10.06222 -9.85476 -9.21314 -9.13589 -9.01187 -8.56527 -8.46415 -7.86969 -6.03581 -4.12009 1.71150 1.87652 2.38072 2.78749 3.28060 3.36662 3.39934 3.55739 3.71492 3.99907 4.23558 4.40147 4.49217 4.58579 4.81730 4.92161 5.06747 5.15626 5.26645 5.33918 5.45751 5.48147 5.56719 5.62165 5.63234 5.66270 5.79019 5.87212 5.89814 6.04241 6.19787 6.22927 6.32199 6.40320 6.57741 6.67209 6.83249 6.96342 7.01645 7.14426 7.20242 7.55905 7.61440 7.75784 7.85405 7.93587 8.12072 8.32877 8.53566 8.92258 9.53776 11.01725 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.003217 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.173536 B = 8702.377653 C =10373.835021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.107 0.893 4 C 0.106 3.894 5 N -0.597 5.597 6 C 0.529 3.471 7 O -0.515 6.515 8 C 0.498 3.502 9 O -0.516 6.516 10 N -0.567 5.567 11 C 0.071 3.929 12 C -0.133 4.133 13 C -0.113 4.113 14 C 0.040 3.960 15 H 0.030 0.970 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.881 5.881 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.108 3.892 25 C 0.100 3.900 26 C -0.099 4.099 27 H 0.123 0.877 28 C 0.496 3.504 29 O -0.514 6.514 30 O -0.507 6.507 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.125 0.875 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.263 0.737 43 H 0.125 0.875 44 H 0.049 0.951 45 H 0.138 0.862 46 H 0.079 0.921 47 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.387 14.162 -1.635 18.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.125 0.875 4 C -0.016 4.016 5 N -0.331 5.331 6 C 0.315 3.685 7 O -0.392 6.392 8 C 0.279 3.721 9 O -0.393 6.393 10 N -0.298 5.298 11 C -0.051 4.051 12 C -0.172 4.172 13 C -0.151 4.151 14 C 0.021 3.979 15 H 0.048 0.952 16 C -0.557 4.557 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.519 5.519 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.011 4.011 25 C -0.023 4.023 26 C -0.119 4.119 27 H 0.141 0.859 28 C 0.337 3.663 29 O -0.402 6.402 30 O -0.318 6.318 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.143 0.857 44 H 0.067 0.933 45 H 0.156 0.844 46 H 0.097 0.903 47 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -11.534 14.097 -1.842 18.307 hybrid contribution 0.580 -0.366 0.921 1.148 sum -10.954 13.730 -0.921 17.589 Atomic orbital electron populations 1.21861 0.93228 1.02418 1.02592 1.22178 0.97227 1.00515 0.91589 0.87529 1.22272 0.96490 0.86700 0.96166 1.48525 1.52745 1.14101 1.17724 1.20473 0.81039 0.81658 0.85341 1.90489 1.51221 1.78750 1.18697 1.19684 0.82033 0.83347 0.87012 1.90646 1.54094 1.77701 1.16878 1.48445 1.56794 1.15373 1.09218 1.22700 0.97297 1.05454 0.79683 1.21959 0.96974 0.99601 0.98618 1.21658 0.99502 0.95171 0.98720 1.18893 0.92460 0.97314 0.89222 0.95207 1.21124 1.41960 0.98100 0.94563 0.92209 1.25056 0.95373 0.96215 0.97402 1.69881 1.47281 1.27539 1.07158 0.86525 0.78820 0.83366 0.79244 1.19784 1.21003 1.20955 1.22424 0.94234 0.83594 1.00868 1.22911 0.93942 1.02212 0.83225 1.22227 1.00721 0.96844 0.92146 0.85907 1.22953 0.73055 0.88150 0.82100 1.90709 1.51763 1.17695 1.80069 1.84593 1.74637 1.45496 1.27056 0.92083 0.92062 0.91628 0.90684 0.89493 0.92055 0.85766 0.92068 0.92424 0.93141 0.93017 0.92684 0.85688 0.93263 0.84446 0.90303 0.72922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.90 37.16 0.33 -0.71 16 2 C -0.10 -0.84 3.00 -89.25 -0.27 -1.11 16 3 H 0.11 0.97 6.86 -51.93 -0.36 0.61 16 4 C 0.11 1.08 6.62 -2.98 -0.02 1.06 16 5 N -0.60 -7.98 3.29 -170.48 -0.56 -8.54 16 6 C 0.53 8.74 7.81 -11.59 -0.09 8.65 16 7 O -0.51 -8.79 13.51 5.49 0.07 -8.71 16 8 C 0.50 9.78 7.70 -11.58 -0.09 9.69 16 9 O -0.52 -11.13 13.13 5.50 0.07 -11.06 16 10 N -0.57 -11.55 2.98 -173.54 -0.52 -12.07 16 11 C 0.07 1.24 5.99 -3.71 -0.02 1.22 16 12 C -0.13 -2.30 6.08 -26.61 -0.16 -2.47 16 13 C -0.11 -2.28 5.11 -26.69 -0.14 -2.41 16 14 C 0.04 0.98 2.24 -91.87 -0.21 0.78 16 15 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 16 C -0.52 -13.82 8.56 -34.44 -0.29 -14.12 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 19 N -0.88 -24.89 11.39 55.43 0.63 -24.26 16 20 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.11 2.56 5.39 -3.93 -0.02 2.54 16 25 C 0.10 1.23 6.12 -2.31 -0.01 1.21 16 26 C -0.10 -0.97 3.10 -90.09 -0.28 -1.25 16 27 H 0.12 1.10 7.86 -51.93 -0.41 0.69 16 28 C 0.50 4.98 7.63 36.00 0.27 5.26 16 29 O -0.51 -6.19 16.20 -18.75 -0.30 -6.49 16 30 O -0.51 -4.38 13.42 -39.26 -0.53 -4.91 16 31 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.87 7.60 -51.93 -0.39 0.47 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.13 2.13 4.31 -54.83 -0.24 1.89 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.13 3.38 5.11 -51.93 -0.27 3.11 16 44 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.14 2.03 5.33 -51.93 -0.28 1.76 16 46 H 0.08 0.93 8.04 -51.92 -0.42 0.51 16 47 H 0.41 1.74 9.10 45.56 0.41 2.16 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -31.79 374.14 -7.74 -39.53 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.13 Total: 5.12 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -1.09 Total: 9.92 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.45 Total: -44.87 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.68 Total: -31.17 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.79 -7.74 -39.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599848809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.228 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds