Wall clock time and date at job start Tue Mar 31 2020 20:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.29341 * 2 1 4 4 C 1.54010 * 110.32721 * 237.86823 * 2 1 3 5 5 N 1.47483 * 107.08357 * 242.41145 * 4 2 1 6 6 C 1.34770 * 127.03465 * 154.51332 * 5 4 2 7 7 O 1.21357 * 119.99849 * 0.02562 * 6 5 4 8 8 C 1.49455 * 120.00299 * 180.28043 * 6 5 4 9 9 O 1.21347 * 119.99803 * 6.39480 * 8 6 5 10 10 N 1.34774 * 119.99883 * 186.40378 * 8 6 5 11 11 C 1.46923 * 120.63296 * 8.54896 * 10 8 6 12 12 C 1.53190 * 108.77392 * 126.37560 * 11 10 8 13 13 C 1.53035 * 109.31888 * 54.63279 * 12 11 10 14 14 C 1.53042 * 109.53554 * 298.63930 * 13 12 11 15 15 H 1.09004 * 109.49833 * 301.37258 * 14 13 12 16 16 C 1.50700 * 109.49687 * 181.31456 * 14 13 12 17 17 H 1.08005 * 119.99995 * 359.97438 * 16 14 13 18 18 C 1.37879 * 119.99950 * 179.97438 * 16 14 13 19 19 N 1.31508 * 120.00214 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99925 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46990 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47101 * 120.00014 * 20 18 16 23 23 H 1.48499 * 109.47113 * 240.00494 * 20 18 16 24 24 C 1.46927 * 120.62594 * 188.27267 * 10 8 6 25 25 C 1.48123 * 105.93063 * 334.78196 * 5 4 2 26 26 C 1.54592 * 103.42627 * 39.02088 * 25 5 4 27 27 H 1.09000 * 110.57215 * 81.17262 * 26 25 5 28 28 C 1.50698 * 110.83133 * 204.44866 * 26 25 5 29 29 O 1.20829 * 119.99803 * 113.56611 * 28 26 25 30 30 O 1.34231 * 120.00306 * 293.55937 * 28 26 25 31 31 H 1.08997 * 109.47085 * 180.68189 * 1 2 3 32 32 H 1.09006 * 109.47160 * 300.68114 * 1 2 3 33 33 H 1.09001 * 109.47290 * 60.67872 * 1 2 3 34 34 H 1.08996 * 109.91325 * 123.04657 * 4 2 1 35 35 H 1.08999 * 110.07112 * 1.86259 * 4 2 1 36 36 H 1.09007 * 109.58392 * 246.15688 * 11 10 8 37 37 H 1.08995 * 109.58784 * 6.58505 * 11 10 8 38 38 H 1.09004 * 109.49816 * 174.58802 * 12 11 10 39 39 H 1.09001 * 109.49292 * 294.64727 * 12 11 10 40 40 H 1.08999 * 109.45975 * 58.65269 * 13 12 11 41 41 H 1.08999 * 109.46565 * 178.61510 * 13 12 11 42 42 H 0.97001 * 120.00207 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.59164 * 353.41924 * 24 10 8 44 44 H 1.09004 * 109.58475 * 113.84291 * 24 10 8 45 45 H 1.08997 * 110.65993 * 157.50934 * 25 5 4 46 46 H 1.09007 * 110.65674 * 280.61668 * 25 5 4 47 47 H 0.96697 * 117.00272 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2230 5 7 2.8277 -1.9217 -0.7104 6 6 3.0613 -3.0872 -1.3455 7 8 2.6235 -3.2677 -2.4628 8 6 3.8548 -4.1595 -0.6715 9 8 4.1896 -4.0289 0.4875 10 7 4.1986 -5.2714 -1.3511 11 6 3.9665 -5.3657 -2.7989 12 6 5.2835 -5.7402 -3.4859 13 6 5.8387 -7.0185 -2.8538 14 6 6.1205 -6.7748 -1.3694 15 1 6.8319 -5.9558 -1.2638 16 6 6.6972 -8.0243 -0.7552 17 1 6.8476 -8.9047 -1.3624 18 6 7.0330 -8.0434 0.5820 19 7 6.8495 -6.9716 1.3215 20 14 7.7473 -9.5924 1.3435 21 1 7.8526 -10.6505 0.3068 22 1 9.0968 -9.2988 1.8891 23 1 6.8609 -10.0593 2.4396 24 6 4.8181 -6.4100 -0.6593 25 6 3.2788 -1.5397 0.6478 26 6 2.0671 -0.7735 1.2262 27 1 1.3175 -1.4700 1.6020 28 6 2.5030 0.1793 2.3093 29 8 2.4035 1.3717 2.1409 30 8 3.0015 -0.2965 3.4612 31 1 -0.3633 -1.0276 0.0122 32 1 -0.3634 0.5244 0.8839 33 1 -0.3634 0.5033 -0.8960 34 1 2.7180 -0.1226 -1.8103 35 1 1.2354 -1.1156 -1.8387 36 1 3.2186 -6.1328 -2.9998 37 1 3.6178 -4.4045 -3.1764 38 1 5.1050 -5.9074 -4.5482 39 1 6.0021 -4.9302 -3.3609 40 1 5.1090 -7.8215 -2.9577 41 1 6.7632 -7.3009 -3.3574 42 1 7.0853 -6.9852 2.2623 43 1 5.0310 -6.1376 0.3744 44 1 4.1410 -7.2639 -0.6823 45 1 3.4935 -2.4258 1.2451 46 1 4.1524 -0.8898 0.5942 47 1 3.2672 0.3533 4.1262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599848809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:51 Heat of formation + Delta-G solvation = -162.830888 kcal Electronic energy + Delta-G solvation = -30676.557272 eV Core-core repulsion = 26438.012520 eV Total energy + Delta-G solvation = -4238.544752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.23932 -41.46380 -40.04283 -38.85048 -38.41218 -37.13957 -35.27746 -34.05547 -33.41180 -31.64295 -31.43940 -28.57818 -27.19677 -26.68130 -25.79223 -24.01581 -23.48007 -22.78116 -21.31007 -20.75783 -20.14518 -19.18642 -18.65339 -18.38274 -18.06969 -17.68820 -17.25290 -16.98725 -16.57158 -16.45508 -15.72148 -15.56293 -15.20904 -14.99863 -14.76801 -14.64590 -14.59007 -14.40919 -14.27187 -14.09120 -13.90332 -13.48534 -13.31841 -13.30039 -12.95839 -12.87966 -12.59817 -12.44306 -12.28850 -12.19883 -12.13434 -12.03827 -11.80179 -11.70670 -11.65974 -11.43964 -11.07483 -10.95641 -10.53634 -10.22931 -9.92485 -9.54048 -8.10213 -6.26701 0.31585 1.00291 1.20771 1.42088 1.44052 1.55397 1.97584 2.11183 2.39920 2.45901 3.03779 3.18366 3.26038 3.39815 3.78501 4.01684 4.09458 4.12580 4.17530 4.33042 4.36141 4.47703 4.55342 4.60305 4.62918 4.67678 4.72142 4.76308 4.82722 4.88356 4.97181 4.99628 5.07709 5.17439 5.23526 5.24806 5.31076 5.33676 5.50129 5.55833 5.59076 5.86465 5.94723 5.98776 6.27008 6.37197 6.62696 6.84493 6.94246 6.98190 7.43136 8.93637 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.003217 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.173536 B = 8702.377653 C =10373.835021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.109 0.891 4 C 0.104 3.896 5 N -0.589 5.589 6 C 0.537 3.463 7 O -0.520 6.520 8 C 0.489 3.511 9 O -0.544 6.544 10 N -0.575 5.575 11 C 0.071 3.929 12 C -0.126 4.126 13 C -0.107 4.107 14 C 0.039 3.961 15 H -0.011 1.011 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 0.957 3.043 21 H -0.264 1.264 22 H -0.283 1.283 23 H -0.281 1.281 24 C 0.123 3.877 25 C 0.098 3.902 26 C -0.094 4.094 27 H 0.132 0.868 28 C 0.503 3.497 29 O -0.533 6.533 30 O -0.510 6.510 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.136 0.864 38 H 0.100 0.900 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.261 0.739 43 H 0.088 0.912 44 H 0.045 0.955 45 H 0.111 0.889 46 H 0.084 0.916 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.655 14.773 -2.826 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.127 0.873 4 C -0.016 4.016 5 N -0.322 5.322 6 C 0.321 3.679 7 O -0.398 6.398 8 C 0.271 3.729 9 O -0.423 6.423 10 N -0.307 5.307 11 C -0.049 4.049 12 C -0.164 4.164 13 C -0.145 4.145 14 C 0.020 3.980 15 H 0.007 0.993 16 C -0.574 4.574 17 H 0.080 0.920 18 C -0.187 4.187 19 N -0.551 5.551 20 Si 0.783 3.217 21 H -0.188 1.188 22 H -0.209 1.209 23 H -0.207 1.207 24 C 0.001 3.999 25 C -0.024 4.024 26 C -0.114 4.114 27 H 0.150 0.850 28 C 0.345 3.655 29 O -0.423 6.423 30 O -0.324 6.324 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.153 0.847 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.129 0.871 46 H 0.102 0.898 47 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -12.812 14.741 -3.034 19.765 hybrid contribution 1.000 -0.492 1.364 1.761 sum -11.812 14.249 -1.670 18.584 Atomic orbital electron populations 1.21853 0.91770 1.02649 1.03501 1.22142 0.98297 0.99967 0.90077 0.87322 1.22547 0.96620 0.85483 0.96990 1.48509 1.51987 1.13780 1.17969 1.19617 0.81163 0.81923 0.85235 1.90467 1.51738 1.79011 1.18631 1.20353 0.81803 0.83868 0.86856 1.90646 1.55023 1.78431 1.18213 1.48455 1.56827 1.14925 1.10475 1.22901 0.97757 1.06572 0.77704 1.21925 0.96348 0.97527 1.00560 1.21553 1.00066 0.97069 0.95762 1.18824 0.91746 0.95096 0.92360 0.99257 1.21499 1.42004 0.98894 0.94958 0.92048 1.25845 0.95784 0.99050 0.97983 1.70052 1.48266 1.29535 1.07202 0.85515 0.77863 0.79915 0.78420 1.18765 1.20900 1.20663 1.21868 0.94116 0.84639 0.99246 1.22839 0.95524 1.01483 0.82601 1.22194 0.99623 0.96902 0.92668 0.85039 1.22860 0.72598 0.87668 0.82330 1.90706 1.52672 1.18378 1.80546 1.84563 1.74202 1.46428 1.27220 0.92161 0.91764 0.90182 0.89297 0.88687 0.90737 0.84666 0.88158 0.93359 0.92369 0.92804 0.92942 0.89390 0.93646 0.87098 0.89791 0.70724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.90 71.98 0.64 -1.04 16 2 C -0.09 -1.31 3.00 -9.90 -0.03 -1.34 16 3 H 0.11 1.71 6.86 -2.38 -0.02 1.69 16 4 C 0.10 1.88 6.62 86.53 0.57 2.46 16 5 N -0.59 -15.20 3.29 -811.64 -2.67 -17.87 16 6 C 0.54 17.38 7.81 87.27 0.68 18.07 16 7 O -0.52 -16.91 13.51 -3.27 -0.04 -16.95 16 8 C 0.49 19.66 7.70 87.27 0.67 20.33 16 9 O -0.54 -24.66 13.13 -3.24 -0.04 -24.71 16 10 N -0.58 -23.84 2.98 -821.32 -2.45 -26.29 16 11 C 0.07 2.41 5.99 86.36 0.52 2.93 16 12 C -0.13 -4.13 6.08 30.67 0.19 -3.95 16 13 C -0.11 -4.25 5.11 30.62 0.16 -4.09 16 14 C 0.04 1.96 2.24 -11.61 -0.03 1.93 16 15 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 16 C -0.54 -29.10 8.56 25.60 0.22 -28.88 16 17 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 18 C 0.01 0.72 5.31 84.66 0.45 1.17 16 19 N -0.91 -53.57 11.39 21.45 0.24 -53.32 16 20 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 24 C 0.12 6.02 5.39 86.22 0.46 6.49 16 25 C 0.10 2.39 6.12 86.61 0.53 2.92 16 26 C -0.09 -1.72 3.10 -10.45 -0.03 -1.75 16 27 H 0.13 2.19 7.86 -2.39 -0.02 2.17 16 28 C 0.50 9.51 7.63 71.24 0.54 10.05 16 29 O -0.53 -12.05 16.20 21.95 0.36 -11.70 16 30 O -0.51 -8.34 13.42 -51.43 -0.69 -9.03 16 31 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 32 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.09 1.63 7.60 -2.39 -0.02 1.61 16 36 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 37 H 0.14 4.37 4.31 -48.25 -0.21 4.17 16 38 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.09 5.02 5.11 -2.39 -0.01 5.01 16 44 H 0.05 2.20 8.14 -2.38 -0.02 2.19 16 45 H 0.11 3.41 5.33 -2.39 -0.01 3.40 16 46 H 0.08 1.96 8.04 -2.38 -0.02 1.94 16 47 H 0.43 3.13 9.10 -74.06 -0.67 2.45 16 Total: -1.00 -70.59 374.14 2.41 -68.18 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.13 Total: 20.96 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 5.55 Total: 25.29 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -4.87 Total: -97.48 kcal Atomic # 8 Polarization: -61.96 SS G_CDS: -0.42 Total: -62.38 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -70.59 2.41 -68.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599848809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.649 kcal (2) G-P(sol) polarization free energy of solvation -70.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds