Wall clock time and date at job start Tue Mar 31 2020 21:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47052 * 2 1 4 4 C 1.50701 * 109.46914 * 240.00563 * 2 1 3 5 5 O 1.21278 * 119.99987 * 325.27308 * 4 2 1 6 6 N 1.34774 * 120.00056 * 145.55703 * 4 2 1 7 7 C 1.47087 * 120.87900 * 4.78523 * 6 4 2 8 8 C 1.53690 * 108.27438 * 128.76218 * 7 6 4 9 9 N 1.46897 * 109.26153 * 54.08106 * 8 7 6 10 10 C 1.46903 * 111.00044 * 172.60968 * 9 8 7 11 11 C 1.50703 * 109.46977 * 294.29736 * 10 9 8 12 12 H 1.07994 * 119.99704 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99651 * 180.02562 * 11 10 9 14 14 N 1.31506 * 120.00216 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99652 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47379 * 89.99983 * 15 13 11 17 17 H 1.48497 * 109.47127 * 210.00326 * 15 13 11 18 18 H 1.48505 * 109.47129 * 329.99828 * 15 13 11 19 19 C 1.46901 * 111.26550 * 296.75422 * 9 8 7 20 20 C 1.47076 * 120.88295 * 185.06659 * 6 4 2 21 21 C 1.50701 * 109.47249 * 120.00165 * 2 1 3 22 22 C 1.38251 * 119.96254 * 59.72543 * 21 2 1 23 23 C 1.38218 * 120.06726 * 179.72148 * 22 21 2 24 24 C 1.38407 * 120.00093 * 0.55695 * 23 22 21 25 25 F 1.35096 * 120.03533 * 179.74556 * 24 23 22 26 26 C 1.38652 * 119.92774 * 359.71703 * 24 23 22 27 27 F 1.35098 * 120.03285 * 180.02562 * 26 24 23 28 28 C 1.38210 * 119.96475 * 240.00152 * 21 2 1 29 29 H 1.09002 * 109.47418 * 304.97959 * 1 2 3 30 30 H 1.09003 * 109.47398 * 64.97639 * 1 2 3 31 31 H 1.09002 * 109.47090 * 184.98250 * 1 2 3 32 32 H 1.09007 * 109.62513 * 248.52644 * 7 6 4 33 33 H 1.08995 * 109.62994 * 9.10403 * 7 6 4 34 34 H 1.09005 * 109.64874 * 294.07246 * 8 7 6 35 35 H 1.09003 * 109.42404 * 173.94911 * 8 7 6 36 36 H 1.08997 * 109.47414 * 54.30051 * 10 9 8 37 37 H 1.09000 * 109.46798 * 174.30017 * 10 9 8 38 38 H 0.97003 * 120.00287 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.49913 * 303.14407 * 19 9 8 40 40 H 1.09007 * 109.48825 * 183.06214 * 19 9 8 41 41 H 1.09004 * 109.62747 * 350.89365 * 20 6 4 42 42 H 1.09002 * 109.62700 * 111.47227 * 20 6 4 43 43 H 1.08003 * 119.96954 * 0.02562 * 22 21 2 44 44 H 1.08007 * 119.99793 * 180.27638 * 23 22 21 45 45 H 1.07999 * 120.00043 * 0.02562 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 1.4205 -1.6581 -1.6758 6 7 3.1644 -0.2958 -1.8330 7 6 3.9806 0.7791 -1.2483 8 6 5.4343 0.2878 -1.1622 9 7 5.8701 -0.1712 -2.4878 10 6 7.3052 -0.4852 -2.4907 11 6 8.0960 0.7773 -2.2625 12 1 7.5837 1.7184 -2.1283 13 6 9.4735 0.7305 -2.2252 14 7 10.0972 -0.4156 -2.3891 15 14 10.4537 2.2951 -1.9416 16 1 10.6684 2.4876 -0.4849 17 1 11.7673 2.1871 -2.6256 18 1 9.7045 3.4547 -2.4890 19 6 5.0783 -1.3231 -2.9396 20 6 3.6132 -0.9021 -3.0956 21 6 2.0323 -0.7104 1.2304 22 6 1.6932 -2.0324 1.4513 23 6 2.1575 -2.6878 2.5762 24 6 2.9533 -2.0173 3.4887 25 9 3.4032 -2.6557 4.5910 26 6 3.2887 -0.6898 3.2701 27 9 4.0658 -0.0335 4.1591 28 6 2.8269 -0.0381 2.1397 29 1 -0.3634 0.5891 0.8420 30 1 -0.3634 0.4347 -0.9312 31 1 -0.3633 -1.0238 0.0893 32 1 3.9272 1.6649 -1.8813 33 1 3.6130 1.0163 -0.2500 34 1 5.5012 -0.5363 -0.4517 35 1 6.0745 1.1059 -0.8320 36 1 7.5227 -1.1988 -1.6961 37 1 7.5805 -0.9175 -3.4527 38 1 11.0663 -0.4484 -2.3632 39 1 5.1501 -2.1248 -2.2046 40 1 5.4602 -1.6732 -3.8987 41 1 3.0026 -1.7769 -3.3191 42 1 3.5251 -0.1747 -3.9026 43 1 1.0689 -2.5550 0.7417 44 1 1.8955 -3.7219 2.7453 45 1 3.0871 0.9960 1.9685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646098029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:12 Heat of formation + Delta-G solvation = -91.438799 kcal Electronic energy + Delta-G solvation = -29940.536690 eV Core-core repulsion = 25594.000216 eV Total energy + Delta-G solvation = -4346.536474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.64534 -48.72065 -40.70997 -39.03785 -37.58909 -34.54645 -34.16592 -32.43249 -31.20550 -30.82616 -29.37523 -28.33661 -25.93485 -24.68830 -23.65005 -23.28459 -22.62527 -21.64749 -20.36977 -18.77185 -18.14620 -17.79213 -17.20189 -16.65150 -16.49738 -16.41920 -15.78450 -15.61280 -15.12639 -14.91952 -14.71874 -14.66530 -14.47203 -14.19870 -13.88363 -13.85231 -13.61697 -13.40991 -13.11836 -12.93972 -12.49395 -12.35821 -12.21958 -11.95242 -11.86347 -11.73516 -11.34495 -11.28650 -11.11690 -10.97053 -10.80086 -10.65533 -10.57970 -9.94864 -9.81418 -9.33293 -9.31324 -8.85518 -8.57182 -8.48132 -7.38516 -6.09118 -4.11488 0.58279 0.71032 2.51822 2.93091 3.11922 3.27507 3.34375 3.37393 3.53239 4.04521 4.19296 4.27033 4.36152 4.43419 4.65555 4.69376 4.74240 4.83516 4.96400 5.20455 5.26580 5.31672 5.34631 5.42388 5.48974 5.50131 5.56107 5.59314 5.63475 5.69543 5.73747 5.80856 5.89274 5.95746 6.04945 6.22729 6.38401 6.40713 6.45212 6.59288 7.17107 7.23849 7.44233 7.70159 7.96680 8.07373 8.12667 8.42920 8.95414 9.53306 11.01696 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.003632 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.006124 B = 7708.439795 C = 9358.546177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 H 0.104 0.896 4 C 0.522 3.478 5 O -0.545 6.545 6 N -0.603 5.603 7 C 0.106 3.894 8 C 0.051 3.949 9 N -0.534 5.534 10 C 0.194 3.806 11 C -0.511 4.511 12 H 0.064 0.936 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.041 3.959 20 C 0.117 3.883 21 C -0.058 4.058 22 C -0.085 4.085 23 C -0.123 4.123 24 C 0.067 3.933 25 F -0.129 7.129 26 C 0.072 3.928 27 F -0.126 7.126 28 C -0.117 4.117 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.025 0.975 35 H 0.098 0.902 36 H -0.009 1.009 37 H 0.032 0.968 38 H 0.262 0.738 39 H 0.026 0.974 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.815 0.076 8.086 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.094 4.094 3 H 0.123 0.877 4 C 0.310 3.690 5 O -0.423 6.423 6 N -0.336 5.336 7 C -0.017 4.017 8 C -0.078 4.078 9 N -0.259 5.259 10 C 0.069 3.931 11 C -0.549 4.549 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.089 4.089 20 C -0.005 4.005 21 C -0.059 4.059 22 C -0.103 4.103 23 C -0.142 4.142 24 C 0.047 3.953 25 F -0.107 7.107 26 C 0.052 3.948 27 F -0.105 7.105 28 C -0.136 4.136 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.116 0.884 36 H 0.009 0.991 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.165 0.835 44 H 0.165 0.835 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.960 -0.126 7.570 21.347 hybrid contribution 1.347 0.140 1.132 1.765 sum -18.613 0.014 8.702 20.546 Atomic orbital electron populations 1.21684 0.91024 1.03556 1.02547 1.20360 0.98544 1.00149 0.90344 0.87745 1.20287 0.80387 0.83911 0.84449 1.90657 1.57654 1.27919 1.66028 1.48246 1.23131 1.37588 1.24620 1.22193 0.91431 0.89960 0.98113 1.22390 0.93459 1.00721 0.91247 1.62092 1.06875 1.32417 1.24564 1.19729 0.80229 0.96521 0.96633 1.21115 0.90704 0.94096 1.48997 0.91810 1.24987 0.97846 0.96298 0.95361 1.69950 1.08826 1.24749 1.50086 0.86507 0.79416 0.83365 0.78201 1.20707 1.21228 1.19717 1.22402 0.92652 0.92962 1.00851 1.21786 0.95058 0.98775 0.84864 1.19331 0.97294 0.94303 0.94951 1.21094 0.98922 0.93794 0.96508 1.21093 0.97940 1.01269 0.93860 1.17749 1.00756 0.90023 0.86801 1.91534 1.87486 1.81359 1.50364 1.17585 0.96725 0.89763 0.90742 1.91553 1.72095 1.80426 1.66379 1.20991 0.98528 1.01507 0.92560 0.91493 0.91604 0.91107 0.90336 0.90362 0.95679 0.88422 0.99130 0.94992 0.92831 0.95560 0.90025 0.89337 0.90795 0.83528 0.83491 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 8.65 37.16 0.32 -0.72 16 2 C -0.07 -0.69 2.13 -92.92 -0.20 -0.89 16 3 H 0.10 0.80 5.98 -51.93 -0.31 0.49 16 4 C 0.52 6.81 6.36 -10.99 -0.07 6.74 16 5 O -0.54 -8.45 15.32 5.56 0.09 -8.36 16 6 N -0.60 -8.32 3.00 -172.18 -0.52 -8.84 16 7 C 0.11 1.39 6.32 -3.36 -0.02 1.36 16 8 C 0.05 0.89 5.47 -3.47 -0.02 0.88 16 9 N -0.53 -10.74 4.62 -235.46 -1.09 -11.82 16 10 C 0.19 4.85 4.72 -4.97 -0.02 4.82 16 11 C -0.51 -13.69 8.41 -34.44 -0.29 -13.98 16 12 H 0.06 1.67 7.13 -52.49 -0.37 1.29 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 15 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 C 0.04 0.71 5.62 -3.70 -0.02 0.68 16 20 C 0.12 1.72 6.61 -3.60 -0.02 1.70 16 21 C -0.06 -0.58 4.71 -104.63 -0.49 -1.07 16 22 C -0.09 -0.85 8.74 -39.58 -0.35 -1.20 16 23 C -0.12 -1.21 10.02 -39.53 -0.40 -1.61 16 24 C 0.07 0.78 7.31 -39.37 -0.29 0.49 16 25 F -0.13 -1.64 17.18 2.25 0.04 -1.60 16 26 C 0.07 0.85 7.31 -39.37 -0.29 0.56 16 27 F -0.13 -1.64 17.18 2.25 0.04 -1.61 16 28 C -0.12 -1.17 9.10 -39.53 -0.36 -1.53 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.61 7.08 -51.93 -0.37 0.24 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.80 4.78 -51.93 -0.25 0.55 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.10 1.82 6.67 -51.93 -0.35 1.48 16 36 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 37 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 1.38 7.99 -51.93 -0.41 0.96 16 41 H 0.09 1.28 7.04 -51.93 -0.37 0.91 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.15 1.43 7.06 -52.48 -0.37 1.06 16 44 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 45 H 0.15 1.17 7.62 -52.49 -0.40 0.77 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -31.19 371.06 -8.87 -40.06 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.13 Total: -1.71 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -2.61 Total: -2.29 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.87 Total: -46.06 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.08 Total: -3.20 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.19 -8.87 -40.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646098029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.377 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds