Wall clock time and date at job start Tue Mar 31 2020 21:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47052 * 2 1 4 4 C 1.50701 * 109.46914 * 240.00563 * 2 1 3 5 5 O 1.21278 * 119.99987 * 325.27308 * 4 2 1 6 6 N 1.34774 * 120.00056 * 145.55703 * 4 2 1 7 7 C 1.47087 * 120.87900 * 4.78523 * 6 4 2 8 8 C 1.53690 * 108.27438 * 128.76218 * 7 6 4 9 9 N 1.46897 * 109.26153 * 54.08106 * 8 7 6 10 10 C 1.46903 * 111.00044 * 172.60968 * 9 8 7 11 11 C 1.50703 * 109.46977 * 294.29736 * 10 9 8 12 12 H 1.07994 * 119.99704 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99651 * 180.02562 * 11 10 9 14 14 N 1.31506 * 120.00216 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99652 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47379 * 89.99983 * 15 13 11 17 17 H 1.48497 * 109.47127 * 210.00326 * 15 13 11 18 18 H 1.48505 * 109.47129 * 329.99828 * 15 13 11 19 19 C 1.46901 * 111.26550 * 296.75422 * 9 8 7 20 20 C 1.47076 * 120.88295 * 185.06659 * 6 4 2 21 21 C 1.50701 * 109.47249 * 120.00165 * 2 1 3 22 22 C 1.38251 * 119.96254 * 59.72543 * 21 2 1 23 23 C 1.38218 * 120.06726 * 179.72148 * 22 21 2 24 24 C 1.38407 * 120.00093 * 0.55695 * 23 22 21 25 25 F 1.35096 * 120.03533 * 179.74556 * 24 23 22 26 26 C 1.38652 * 119.92774 * 359.71703 * 24 23 22 27 27 F 1.35098 * 120.03285 * 180.02562 * 26 24 23 28 28 C 1.38210 * 119.96475 * 240.00152 * 21 2 1 29 29 H 1.09002 * 109.47418 * 304.97959 * 1 2 3 30 30 H 1.09003 * 109.47398 * 64.97639 * 1 2 3 31 31 H 1.09002 * 109.47090 * 184.98250 * 1 2 3 32 32 H 1.09007 * 109.62513 * 248.52644 * 7 6 4 33 33 H 1.08995 * 109.62994 * 9.10403 * 7 6 4 34 34 H 1.09005 * 109.64874 * 294.07246 * 8 7 6 35 35 H 1.09003 * 109.42404 * 173.94911 * 8 7 6 36 36 H 1.08997 * 109.47414 * 54.30051 * 10 9 8 37 37 H 1.09000 * 109.46798 * 174.30017 * 10 9 8 38 38 H 0.97003 * 120.00287 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.49913 * 303.14407 * 19 9 8 40 40 H 1.09007 * 109.48825 * 183.06214 * 19 9 8 41 41 H 1.09004 * 109.62747 * 350.89365 * 20 6 4 42 42 H 1.09002 * 109.62700 * 111.47227 * 20 6 4 43 43 H 1.08003 * 119.96954 * 0.02562 * 22 21 2 44 44 H 1.08007 * 119.99793 * 180.27638 * 23 22 21 45 45 H 1.07999 * 120.00043 * 0.02562 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 1.4205 -1.6581 -1.6758 6 7 3.1644 -0.2958 -1.8330 7 6 3.9806 0.7791 -1.2483 8 6 5.4343 0.2878 -1.1622 9 7 5.8701 -0.1712 -2.4878 10 6 7.3052 -0.4852 -2.4907 11 6 8.0960 0.7773 -2.2625 12 1 7.5837 1.7184 -2.1283 13 6 9.4735 0.7305 -2.2252 14 7 10.0972 -0.4156 -2.3891 15 14 10.4537 2.2951 -1.9416 16 1 10.6684 2.4876 -0.4849 17 1 11.7673 2.1871 -2.6256 18 1 9.7045 3.4547 -2.4890 19 6 5.0783 -1.3231 -2.9396 20 6 3.6132 -0.9021 -3.0956 21 6 2.0323 -0.7104 1.2304 22 6 1.6932 -2.0324 1.4513 23 6 2.1575 -2.6878 2.5762 24 6 2.9533 -2.0173 3.4887 25 9 3.4032 -2.6557 4.5910 26 6 3.2887 -0.6898 3.2701 27 9 4.0658 -0.0335 4.1591 28 6 2.8269 -0.0381 2.1397 29 1 -0.3634 0.5891 0.8420 30 1 -0.3634 0.4347 -0.9312 31 1 -0.3633 -1.0238 0.0893 32 1 3.9272 1.6649 -1.8813 33 1 3.6130 1.0163 -0.2500 34 1 5.5012 -0.5363 -0.4517 35 1 6.0745 1.1059 -0.8320 36 1 7.5227 -1.1988 -1.6961 37 1 7.5805 -0.9175 -3.4527 38 1 11.0663 -0.4484 -2.3632 39 1 5.1501 -2.1248 -2.2046 40 1 5.4602 -1.6732 -3.8987 41 1 3.0026 -1.7769 -3.3191 42 1 3.5251 -0.1747 -3.9026 43 1 1.0689 -2.5550 0.7417 44 1 1.8955 -3.7219 2.7453 45 1 3.0871 0.9960 1.9685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646098029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:11 Heat of formation + Delta-G solvation = -109.814572 kcal Electronic energy + Delta-G solvation = -29941.333523 eV Core-core repulsion = 25594.000216 eV Total energy + Delta-G solvation = -4347.333307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.57026 -49.65501 -41.70069 -40.01824 -38.90507 -35.98586 -35.09944 -34.32556 -32.13003 -31.97799 -30.22397 -29.93358 -27.47719 -25.72191 -24.69145 -24.32507 -23.99476 -23.02119 -21.63338 -19.84792 -19.03998 -18.76230 -18.49056 -18.10987 -17.63045 -17.41527 -16.78976 -16.68471 -16.59230 -16.07578 -16.01826 -15.84337 -15.60722 -15.32045 -15.25731 -15.03362 -14.86416 -14.33570 -14.20457 -13.95108 -13.85870 -13.52402 -13.29500 -13.14729 -12.90815 -12.75311 -12.63551 -12.60544 -12.54235 -12.38588 -12.29752 -12.11976 -11.95666 -11.73807 -11.27770 -10.85211 -10.62149 -10.14215 -9.77030 -9.71147 -9.07372 -8.20262 -6.30656 -0.26030 -0.08039 1.43662 1.44624 1.51095 1.56005 1.92403 2.26390 2.41107 2.71132 3.12486 3.18819 3.22309 3.39368 3.43142 3.57931 3.90410 3.93480 4.01714 4.03196 4.06675 4.22435 4.27268 4.32331 4.44086 4.52256 4.63309 4.72393 4.73991 4.78174 4.85116 4.91043 4.94239 4.94268 4.98606 5.01903 5.18261 5.21832 5.23631 5.34421 5.45586 5.63543 5.63957 6.01984 6.21756 6.42068 6.55300 6.85479 7.08726 7.39665 8.91216 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.003632 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.006124 B = 7708.439795 C = 9358.546177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 H 0.132 0.868 4 C 0.521 3.479 5 O -0.570 6.570 6 N -0.610 5.610 7 C 0.118 3.882 8 C 0.049 3.951 9 N -0.535 5.535 10 C 0.208 3.792 11 C -0.519 4.519 12 H 0.072 0.928 13 C 0.001 3.999 14 N -0.938 5.938 15 Si 0.969 3.031 16 H -0.274 1.274 17 H -0.287 1.287 18 H -0.259 1.259 19 C 0.042 3.958 20 C 0.127 3.873 21 C -0.059 4.059 22 C -0.087 4.087 23 C -0.119 4.119 24 C 0.048 3.952 25 F -0.140 7.140 26 C 0.052 3.948 27 F -0.138 7.138 28 C -0.110 4.110 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.008 0.992 35 H 0.086 0.914 36 H -0.045 1.045 37 H 0.004 0.996 38 H 0.263 0.737 39 H 0.010 0.990 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.150 0.850 44 H 0.166 0.834 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.572 2.389 8.318 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 H 0.149 0.851 4 C 0.310 3.690 5 O -0.449 6.449 6 N -0.342 5.342 7 C -0.005 4.005 8 C -0.079 4.079 9 N -0.259 5.259 10 C 0.082 3.918 11 C -0.558 4.558 12 H 0.090 0.910 13 C -0.197 4.197 14 N -0.578 5.578 15 Si 0.794 3.206 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.183 1.183 19 C -0.087 4.087 20 C 0.005 3.995 21 C -0.060 4.060 22 C -0.105 4.105 23 C -0.138 4.138 24 C 0.028 3.972 25 F -0.119 7.119 26 C 0.032 3.968 27 F -0.117 7.117 28 C -0.129 4.129 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.132 0.868 34 H 0.027 0.973 35 H 0.104 0.896 36 H -0.027 1.027 37 H 0.022 0.978 38 H 0.072 0.928 39 H 0.028 0.972 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.168 0.832 44 H 0.184 0.816 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -21.755 2.198 7.811 23.219 hybrid contribution 1.848 -0.684 1.040 2.228 sum -19.907 1.514 8.850 21.838 Atomic orbital electron populations 1.21707 0.89671 1.03555 1.03674 1.20423 0.99578 1.00780 0.87862 0.85066 1.20907 0.79651 0.83462 0.84961 1.90652 1.58301 1.29095 1.66884 1.48337 1.23646 1.37814 1.24391 1.22176 0.88051 0.89715 1.00533 1.22446 0.96537 0.99650 0.89309 1.62029 1.04354 1.33247 1.26303 1.19375 0.83598 0.95151 0.93711 1.21453 0.91211 0.94730 1.48371 0.90992 1.25933 0.99143 0.99645 0.95001 1.70096 1.09128 1.27228 1.51363 0.85379 0.77592 0.79376 0.78278 1.19977 1.21251 1.18255 1.22443 0.94405 0.91731 1.00104 1.21615 0.92526 0.99401 0.86007 1.19436 0.97130 0.94298 0.95120 1.21234 0.98761 0.94119 0.96403 1.21290 0.97110 1.02121 0.93277 1.18037 1.01681 0.90412 0.87060 1.91499 1.87773 1.81601 1.51024 1.17872 0.97405 0.90032 0.91452 1.91517 1.72577 1.80639 1.66937 1.21217 0.97573 1.02560 0.91527 0.89190 0.91412 0.91991 0.88804 0.86817 0.97340 0.89554 1.02731 0.97763 0.92801 0.97190 0.90219 0.89048 0.89566 0.83234 0.81644 0.80767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.65 71.98 0.62 -0.99 16 2 C -0.07 -1.01 2.13 -12.29 -0.03 -1.03 16 3 H 0.13 1.33 5.98 -2.39 -0.01 1.31 16 4 C 0.52 12.20 6.36 87.66 0.56 12.76 16 5 O -0.57 -16.59 15.32 -3.02 -0.05 -16.64 16 6 N -0.61 -15.33 3.00 -817.05 -2.45 -17.78 16 7 C 0.12 2.72 6.32 86.50 0.55 3.26 16 8 C 0.05 1.70 5.47 86.54 0.47 2.17 16 9 N -0.53 -21.63 4.62 -898.86 -4.15 -25.78 16 10 C 0.21 10.81 4.72 85.56 0.40 11.21 16 11 C -0.52 -28.13 8.41 25.60 0.22 -27.91 16 12 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 13 C 0.00 0.04 5.46 84.66 0.46 0.50 16 14 N -0.94 -55.96 13.29 21.45 0.28 -55.68 16 15 Si 0.97 42.88 29.54 68.60 2.03 44.90 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 19 C 0.04 1.48 5.62 86.38 0.49 1.97 16 20 C 0.13 3.55 6.61 86.35 0.57 4.12 16 21 C -0.06 -1.01 4.71 -19.87 -0.09 -1.11 16 22 C -0.09 -1.59 8.74 22.27 0.19 -1.39 16 23 C -0.12 -2.22 10.02 22.31 0.22 -2.00 16 24 C 0.05 1.10 7.31 22.41 0.16 1.26 16 25 F -0.14 -3.59 17.18 44.97 0.77 -2.81 16 26 C 0.05 1.18 7.31 22.41 0.16 1.34 16 27 F -0.14 -3.53 17.18 44.97 0.77 -2.76 16 28 C -0.11 -1.91 9.10 22.30 0.20 -1.71 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.90 7.08 -2.39 -0.02 0.88 16 32 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.11 1.82 4.78 -2.39 -0.01 1.81 16 34 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 35 H 0.09 3.15 6.67 -2.39 -0.02 3.13 16 36 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 37 H 0.00 0.24 7.97 -2.39 -0.02 0.22 16 38 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.08 2.77 7.99 -2.38 -0.02 2.75 16 41 H 0.09 2.53 7.04 -2.38 -0.02 2.52 16 42 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.15 2.67 7.06 -2.91 -0.02 2.65 16 44 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.17 2.03 7.62 -2.91 -0.02 2.01 16 Total: -1.00 -69.46 371.06 3.38 -66.07 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.01 Total: 8.03 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 5.17 Total: 2.45 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -6.32 Total: -99.25 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.05 Total: -16.64 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 1.55 Total: -5.57 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -69.46 3.38 -66.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646098029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.742 kcal (2) G-P(sol) polarization free energy of solvation -69.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds