Wall clock time and date at job start Tue Mar 31 2020 21:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46544 * 2 1 4 4 C 1.50698 * 109.47005 * 240.00217 * 2 1 3 5 5 O 1.21293 * 119.99578 * 273.04926 * 4 2 1 6 6 N 1.34775 * 120.00286 * 93.04961 * 4 2 1 7 7 C 1.47025 * 125.64639 * 174.93398 * 6 4 2 8 8 C 1.54323 * 107.26588 * 181.10707 * 7 6 4 9 9 C 1.55159 * 102.94414 * 22.19863 * 8 7 6 10 10 H 1.08991 * 111.00799 * 82.60839 * 9 8 7 11 11 C 1.52999 * 111.00062 * 206.42349 * 9 8 7 12 12 N 1.46497 * 109.47111 * 293.54148 * 11 9 8 13 13 C 1.36939 * 120.00240 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99987 * 359.97438 * 13 12 11 15 15 C 1.38805 * 120.00414 * 180.02562 * 13 12 11 16 16 N 1.31623 * 120.00153 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00302 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46823 * 269.99816 * 17 15 13 19 19 H 1.48501 * 109.47056 * 29.99822 * 17 15 13 20 20 H 1.48498 * 109.47090 * 149.99898 * 17 15 13 21 21 C 1.47426 * 125.64747 * 354.99296 * 6 4 2 22 22 C 1.50696 * 109.47154 * 120.00108 * 2 1 3 23 23 C 1.38229 * 119.99237 * 59.72583 * 22 2 1 24 24 C 1.38186 * 120.05295 * 179.72877 * 23 22 2 25 25 C 1.38496 * 120.02443 * 0.54500 * 24 23 22 26 26 F 1.35097 * 120.01027 * 179.74975 * 25 24 23 27 27 C 1.38394 * 119.97483 * 359.73064 * 25 24 23 28 28 C 1.38444 * 119.94966 * 0.02562 * 27 25 24 29 29 F 1.35096 * 120.01433 * 179.97438 * 28 27 25 30 30 H 1.09002 * 109.46912 * 177.04574 * 1 2 3 31 31 H 1.09002 * 109.47333 * 297.04084 * 1 2 3 32 32 H 1.08997 * 109.47247 * 57.04568 * 1 2 3 33 33 H 1.08999 * 109.87921 * 61.69566 * 7 6 4 34 34 H 1.08994 * 110.01366 * 300.59748 * 7 6 4 35 35 H 1.09003 * 110.72193 * 263.83073 * 8 7 6 36 36 H 1.09005 * 110.87261 * 140.63053 * 8 7 6 37 37 H 1.09008 * 109.47054 * 173.54177 * 11 9 8 38 38 H 1.09004 * 109.47550 * 53.54639 * 11 9 8 39 39 H 0.97002 * 120.00534 * 0.02562 * 12 11 9 40 40 H 0.96994 * 120.00752 * 180.02562 * 16 15 13 41 41 H 1.09000 * 110.36570 * 36.98525 * 21 6 4 42 42 H 1.08995 * 110.36627 * 274.66107 * 21 6 4 43 43 H 1.08007 * 119.96900 * 359.97438 * 23 22 2 44 44 H 1.08004 * 119.98450 * 180.25459 * 24 23 22 45 45 H 1.08002 * 120.02623 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1818 -1.9140 -1.2173 6 7 2.3155 -0.0083 -2.3456 7 6 2.9086 -0.5550 -3.5748 8 6 3.0741 0.6176 -4.5643 9 6 3.0894 1.8586 -3.6331 10 1 4.0823 2.0199 -3.2134 11 6 2.6008 3.1054 -4.3732 12 7 3.5595 3.4567 -5.4237 13 6 3.3318 4.5458 -6.2222 14 1 2.4452 5.1454 -6.0776 15 6 4.2397 4.8784 -7.2179 16 7 5.3200 4.1473 -7.3945 17 14 3.9287 6.3635 -8.3075 18 1 3.1502 5.9470 -9.5015 19 1 3.1619 7.3831 -7.5475 20 1 5.2268 6.9409 -8.7396 21 6 2.0831 1.4352 -2.5342 22 6 2.0324 -0.7104 1.2304 23 6 1.6937 -2.0321 1.4518 24 6 2.1582 -2.6864 2.5768 25 6 2.9546 -2.0151 3.4897 26 9 3.4044 -2.6536 4.5920 27 6 3.2897 -0.6901 3.2720 28 6 2.8279 -0.0371 2.1420 29 9 3.1537 1.2565 1.9284 30 1 -0.3633 -1.0263 -0.0530 31 1 -0.3634 0.4672 0.9153 32 1 -0.3633 0.5590 -0.8623 33 1 2.2476 -1.3095 -4.0014 34 1 3.8812 -0.9955 -3.3558 35 1 2.2307 0.6628 -5.2534 36 1 4.0132 0.5344 -5.1115 37 1 2.5123 3.9338 -3.6702 38 1 1.6279 2.9040 -4.8216 39 1 4.3556 2.9180 -5.5539 40 1 5.9547 4.3799 -8.0901 41 1 2.2823 1.9757 -1.6088 42 1 1.0606 1.6145 -2.8666 43 1 1.0687 -2.5550 0.7429 44 1 1.8963 -3.7204 2.7467 45 1 3.9103 -0.1657 3.9835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662727394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:30 Heat of formation + Delta-G solvation = -92.052610 kcal Electronic energy + Delta-G solvation = -28873.452973 eV Core-core repulsion = 24526.889882 eV Total energy + Delta-G solvation = -4346.563091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.35489 -49.33314 -40.61344 -39.13007 -37.65340 -34.69860 -34.41529 -32.20038 -31.16812 -30.44213 -29.43033 -29.01494 -25.65438 -25.05216 -23.63113 -23.20058 -22.53378 -21.66096 -20.04961 -19.19291 -18.57458 -17.90407 -17.17005 -16.87185 -16.65910 -16.31048 -16.03679 -15.87918 -15.61980 -15.16375 -14.81092 -14.72615 -14.36243 -14.29740 -13.77216 -13.56383 -13.30276 -13.24195 -13.09085 -13.02331 -12.74396 -12.57408 -12.34602 -12.22558 -12.13225 -11.72218 -11.55222 -11.49048 -11.18026 -10.88952 -10.74346 -10.53223 -10.42567 -10.11134 -9.89268 -9.72438 -9.39865 -8.97611 -8.92265 -8.69441 -6.97571 -5.80869 -3.10028 0.54163 0.68507 2.45024 2.78134 3.09744 3.40943 3.46191 3.47907 3.50316 4.00021 4.09240 4.17948 4.34835 4.49046 4.51275 4.66835 4.71336 4.80268 4.88546 4.93224 5.07135 5.25507 5.29804 5.40326 5.44446 5.45451 5.48500 5.54407 5.56949 5.58057 5.69514 5.78886 5.80820 5.91594 5.95302 6.01175 6.05793 6.17456 6.35835 6.39443 6.40778 6.63620 6.77108 7.41653 7.65798 8.00554 8.37777 9.49253 10.05884 10.40319 11.41909 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022705 B = 0.002131 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.912932 B =13133.346636 C =13520.381135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 H 0.106 0.894 4 C 0.536 3.464 5 O -0.540 6.540 6 N -0.612 5.612 7 C 0.107 3.893 8 C -0.121 4.121 9 C -0.106 4.106 10 H 0.085 0.915 11 C 0.165 3.835 12 N -0.731 5.731 13 C -0.241 4.241 14 H 0.071 0.929 15 C -0.013 4.013 16 N -0.933 5.933 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.282 1.282 20 H -0.291 1.291 21 C 0.102 3.898 22 C -0.120 4.120 23 C -0.025 4.025 24 C -0.167 4.167 25 C 0.130 3.870 26 F -0.133 7.133 27 C -0.197 4.197 28 C 0.138 3.862 29 F -0.127 7.127 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.150 0.850 44 H 0.143 0.857 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 -12.588 21.145 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.092 4.092 3 H 0.124 0.876 4 C 0.324 3.676 5 O -0.418 6.418 6 N -0.345 5.345 7 C -0.015 4.015 8 C -0.159 4.159 9 C -0.125 4.125 10 H 0.104 0.896 11 C 0.037 3.963 12 N -0.375 5.375 13 C -0.372 4.372 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.581 5.581 17 Si 0.738 3.262 18 H -0.217 1.217 19 H -0.207 1.207 20 H -0.218 1.218 21 C -0.021 4.021 22 C -0.121 4.121 23 C -0.043 4.043 24 C -0.186 4.186 25 C 0.110 3.890 26 F -0.111 7.111 27 C -0.216 4.216 28 C 0.118 3.882 29 F -0.105 7.105 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.168 0.832 44 H 0.161 0.839 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.273 -13.098 21.172 26.567 hybrid contribution 0.489 0.892 -0.542 1.152 sum -8.785 -12.206 20.630 25.529 Atomic orbital electron populations 1.21736 0.90878 1.03382 1.03369 1.20157 0.98544 1.00533 0.89927 0.87572 1.19928 0.77505 0.87067 0.83082 1.90679 1.53762 1.14000 1.83362 1.48521 1.61690 1.10310 1.13944 1.22026 0.98179 0.97099 0.84173 1.22661 1.04081 0.92362 0.96748 1.22565 0.99110 0.96046 0.94809 0.89628 1.20550 0.93248 0.92034 0.90507 1.42301 1.24931 1.33327 1.36970 1.19208 1.04998 1.03444 1.09525 0.91151 1.24746 0.97111 0.99393 0.99693 1.69651 1.12406 1.40590 1.35490 0.86186 0.76884 0.82387 0.80698 1.21708 1.20748 1.21770 1.22473 1.00077 0.79889 0.99702 1.19508 1.00875 0.95525 0.96202 1.20883 0.96347 0.92234 0.94809 1.21239 1.00587 1.01684 0.95045 1.17334 0.96767 0.90251 0.84625 1.91531 1.87338 1.81523 1.50727 1.20954 1.06172 0.94689 0.99795 1.17113 0.97158 0.79164 0.94719 1.91535 1.90780 1.33662 1.94547 0.91450 0.90940 0.91141 0.91525 0.91545 0.90193 0.89413 0.96024 0.95990 0.78194 0.93467 0.90477 0.90635 0.83206 0.83906 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.94 37.16 0.33 -0.69 16 2 C -0.07 -0.69 2.49 -92.92 -0.23 -0.92 16 3 H 0.11 1.00 5.43 -51.93 -0.28 0.71 16 4 C 0.54 6.78 6.86 -10.99 -0.08 6.71 16 5 O -0.54 -8.19 14.94 5.55 0.08 -8.10 16 6 N -0.61 -7.66 3.33 -170.52 -0.57 -8.22 16 7 C 0.11 1.39 6.87 -3.06 -0.02 1.37 16 8 C -0.12 -1.68 6.13 -24.90 -0.15 -1.84 16 9 C -0.11 -1.53 3.10 -88.47 -0.27 -1.80 16 10 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 11 C 0.16 3.00 5.71 -4.04 -0.02 2.97 16 12 N -0.73 -17.52 5.45 -59.91 -0.33 -17.85 16 13 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 14 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 17 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 C 0.10 1.17 6.20 -2.53 -0.02 1.16 16 22 C -0.12 -1.20 4.71 -104.55 -0.49 -1.70 16 23 C -0.02 -0.23 8.00 -39.60 -0.32 -0.55 16 24 C -0.17 -1.41 10.02 -39.51 -0.40 -1.81 16 25 C 0.13 1.19 7.30 -39.43 -0.29 0.90 16 26 F -0.13 -1.26 17.27 2.25 0.04 -1.22 16 27 C -0.20 -1.80 10.01 -39.45 -0.39 -2.19 16 28 C 0.14 1.40 7.25 -39.43 -0.29 1.11 16 29 F -0.13 -1.36 16.19 2.25 0.04 -1.33 16 30 H 0.07 0.50 7.48 -51.93 -0.39 0.11 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.02 0.40 8.11 -51.93 -0.42 -0.02 16 39 H 0.38 9.70 7.53 -40.82 -0.31 9.39 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.08 0.78 6.64 -51.93 -0.34 0.44 16 42 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 43 H 0.15 1.35 6.75 -52.48 -0.35 1.00 16 44 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 45 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -31.34 377.42 -8.51 -39.85 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.28 Total: 5.55 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -2.88 Total: -4.41 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.17 Total: -52.96 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.08 Total: -2.55 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.34 -8.51 -39.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662727394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.201 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds