Wall clock time and date at job start Tue Mar 31 2020 21:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46544 * 2 1 4 4 C 1.50698 * 109.47005 * 240.00217 * 2 1 3 5 5 O 1.21293 * 119.99578 * 273.04926 * 4 2 1 6 6 N 1.34775 * 120.00286 * 93.04961 * 4 2 1 7 7 C 1.47025 * 125.64639 * 174.93398 * 6 4 2 8 8 C 1.54323 * 107.26588 * 181.10707 * 7 6 4 9 9 C 1.55159 * 102.94414 * 22.19863 * 8 7 6 10 10 H 1.08991 * 111.00799 * 82.60839 * 9 8 7 11 11 C 1.52999 * 111.00062 * 206.42349 * 9 8 7 12 12 N 1.46497 * 109.47111 * 293.54148 * 11 9 8 13 13 C 1.36939 * 120.00240 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99987 * 359.97438 * 13 12 11 15 15 C 1.38805 * 120.00414 * 180.02562 * 13 12 11 16 16 N 1.31623 * 120.00153 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00302 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46823 * 269.99816 * 17 15 13 19 19 H 1.48501 * 109.47056 * 29.99822 * 17 15 13 20 20 H 1.48498 * 109.47090 * 149.99898 * 17 15 13 21 21 C 1.47426 * 125.64747 * 354.99296 * 6 4 2 22 22 C 1.50696 * 109.47154 * 120.00108 * 2 1 3 23 23 C 1.38229 * 119.99237 * 59.72583 * 22 2 1 24 24 C 1.38186 * 120.05295 * 179.72877 * 23 22 2 25 25 C 1.38496 * 120.02443 * 0.54500 * 24 23 22 26 26 F 1.35097 * 120.01027 * 179.74975 * 25 24 23 27 27 C 1.38394 * 119.97483 * 359.73064 * 25 24 23 28 28 C 1.38444 * 119.94966 * 0.02562 * 27 25 24 29 29 F 1.35096 * 120.01433 * 179.97438 * 28 27 25 30 30 H 1.09002 * 109.46912 * 177.04574 * 1 2 3 31 31 H 1.09002 * 109.47333 * 297.04084 * 1 2 3 32 32 H 1.08997 * 109.47247 * 57.04568 * 1 2 3 33 33 H 1.08999 * 109.87921 * 61.69566 * 7 6 4 34 34 H 1.08994 * 110.01366 * 300.59748 * 7 6 4 35 35 H 1.09003 * 110.72193 * 263.83073 * 8 7 6 36 36 H 1.09005 * 110.87261 * 140.63053 * 8 7 6 37 37 H 1.09008 * 109.47054 * 173.54177 * 11 9 8 38 38 H 1.09004 * 109.47550 * 53.54639 * 11 9 8 39 39 H 0.97002 * 120.00534 * 0.02562 * 12 11 9 40 40 H 0.96994 * 120.00752 * 180.02562 * 16 15 13 41 41 H 1.09000 * 110.36570 * 36.98525 * 21 6 4 42 42 H 1.08995 * 110.36627 * 274.66107 * 21 6 4 43 43 H 1.08007 * 119.96900 * 359.97438 * 23 22 2 44 44 H 1.08004 * 119.98450 * 180.25459 * 24 23 22 45 45 H 1.08002 * 120.02623 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1818 -1.9140 -1.2173 6 7 2.3155 -0.0083 -2.3456 7 6 2.9086 -0.5550 -3.5748 8 6 3.0741 0.6176 -4.5643 9 6 3.0894 1.8586 -3.6331 10 1 4.0823 2.0199 -3.2134 11 6 2.6008 3.1054 -4.3732 12 7 3.5595 3.4567 -5.4237 13 6 3.3318 4.5458 -6.2222 14 1 2.4452 5.1454 -6.0776 15 6 4.2397 4.8784 -7.2179 16 7 5.3200 4.1473 -7.3945 17 14 3.9287 6.3635 -8.3075 18 1 3.1502 5.9470 -9.5015 19 1 3.1619 7.3831 -7.5475 20 1 5.2268 6.9409 -8.7396 21 6 2.0831 1.4352 -2.5342 22 6 2.0324 -0.7104 1.2304 23 6 1.6937 -2.0321 1.4518 24 6 2.1582 -2.6864 2.5768 25 6 2.9546 -2.0151 3.4897 26 9 3.4044 -2.6536 4.5920 27 6 3.2897 -0.6901 3.2720 28 6 2.8279 -0.0371 2.1420 29 9 3.1537 1.2565 1.9284 30 1 -0.3633 -1.0263 -0.0530 31 1 -0.3634 0.4672 0.9153 32 1 -0.3633 0.5590 -0.8623 33 1 2.2476 -1.3095 -4.0014 34 1 3.8812 -0.9955 -3.3558 35 1 2.2307 0.6628 -5.2534 36 1 4.0132 0.5344 -5.1115 37 1 2.5123 3.9338 -3.6702 38 1 1.6279 2.9040 -4.8216 39 1 4.3556 2.9180 -5.5539 40 1 5.9547 4.3799 -8.0901 41 1 2.2823 1.9757 -1.6088 42 1 1.0606 1.6145 -2.8666 43 1 1.0687 -2.5550 0.7429 44 1 1.8963 -3.7204 2.7467 45 1 3.9103 -0.1657 3.9835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662727394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:29 Heat of formation + Delta-G solvation = -109.035642 kcal Electronic energy + Delta-G solvation = -28874.189412 eV Core-core repulsion = 24526.889882 eV Total energy + Delta-G solvation = -4347.299530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.12255 -50.05537 -41.54821 -39.97582 -38.72770 -36.38685 -35.20123 -33.81427 -32.00233 -31.73827 -30.53171 -29.93346 -27.09983 -26.00114 -24.59128 -24.24348 -23.93856 -22.55337 -21.29231 -20.13161 -19.32124 -19.13413 -18.69392 -17.80254 -17.57594 -17.05704 -17.00614 -16.64329 -16.51626 -16.36808 -16.07609 -15.59874 -15.49383 -15.28280 -15.05547 -14.91169 -14.81512 -14.16622 -14.05293 -13.87100 -13.81315 -13.67567 -13.24341 -13.05644 -12.99239 -12.87184 -12.82724 -12.69850 -12.33359 -12.27851 -12.15221 -12.05325 -11.76723 -11.66031 -11.60815 -10.90730 -10.86180 -10.10205 -9.75816 -9.66527 -8.95863 -7.92586 -5.20566 -0.18079 -0.01689 1.49466 1.50129 1.50964 1.59333 1.85790 2.34443 2.58274 2.78591 3.23940 3.34377 3.40447 3.41293 3.48311 3.58431 3.81825 3.83379 3.93158 4.01622 4.12871 4.22373 4.24207 4.33568 4.40483 4.58528 4.62351 4.66546 4.76133 4.79871 4.81814 4.86770 4.88056 4.89165 4.99514 5.03526 5.06877 5.17613 5.21974 5.25495 5.28278 5.42679 5.53684 5.69926 6.29808 6.43841 7.02367 7.36833 8.13699 8.35309 9.31010 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022705 B = 0.002131 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.912932 B =13133.346636 C =13520.381135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.065 4.065 3 H 0.112 0.888 4 C 0.534 3.466 5 O -0.569 6.569 6 N -0.614 5.614 7 C 0.113 3.887 8 C -0.114 4.114 9 C -0.100 4.100 10 H 0.075 0.925 11 C 0.164 3.836 12 N -0.745 5.745 13 C -0.240 4.240 14 H 0.078 0.922 15 C -0.077 4.077 16 N -0.970 5.970 17 Si 0.971 3.029 18 H -0.288 1.288 19 H -0.268 1.268 20 H -0.299 1.299 21 C 0.111 3.889 22 C -0.127 4.127 23 C -0.030 4.030 24 C -0.161 4.161 25 C 0.122 3.878 26 F -0.135 7.135 27 C -0.196 4.196 28 C 0.125 3.875 29 F -0.133 7.133 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.029 0.971 38 H 0.030 0.970 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.152 0.848 44 H 0.163 0.837 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.954 -12.323 22.371 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.086 4.086 3 H 0.130 0.870 4 C 0.323 3.677 5 O -0.448 6.448 6 N -0.346 5.346 7 C -0.010 4.010 8 C -0.153 4.153 9 C -0.119 4.119 10 H 0.094 0.906 11 C 0.038 3.962 12 N -0.387 5.387 13 C -0.372 4.372 14 H 0.096 0.904 15 C -0.270 4.270 16 N -0.621 5.621 17 Si 0.800 3.200 18 H -0.215 1.215 19 H -0.193 1.193 20 H -0.226 1.226 21 C -0.012 4.012 22 C -0.129 4.129 23 C -0.048 4.048 24 C -0.179 4.179 25 C 0.103 3.897 26 F -0.114 7.114 27 C -0.216 4.216 28 C 0.106 3.894 29 F -0.111 7.111 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.170 0.830 44 H 0.181 0.819 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.977 -12.820 22.432 28.072 hybrid contribution 0.978 0.751 -0.858 1.503 sum -9.999 -12.069 21.574 26.666 Atomic orbital electron populations 1.21766 0.89011 1.03758 1.04531 1.20188 0.99991 1.00192 0.88249 0.87005 1.20450 0.76828 0.86862 0.83550 1.90663 1.54989 1.15324 1.83839 1.48573 1.61583 1.10660 1.13811 1.21900 0.98127 0.96623 0.84305 1.22543 1.03127 0.92795 0.96787 1.22395 0.99442 0.94592 0.95516 0.90636 1.20697 0.92312 0.93771 0.89452 1.42532 1.25651 1.32576 1.37987 1.19636 1.04622 1.03763 1.09166 0.90379 1.25541 0.97361 1.02390 1.01669 1.69806 1.13499 1.42466 1.36352 0.85173 0.76339 0.79510 0.78946 1.21530 1.19312 1.22553 1.22458 0.99920 0.79361 0.99453 1.19628 1.01022 0.95919 0.96310 1.20957 0.96605 0.92112 0.95142 1.21462 0.99610 1.02558 0.94316 1.17432 0.97146 0.90386 0.84782 1.91525 1.87425 1.81555 1.50878 1.21115 1.05909 0.94803 0.99734 1.17208 0.97809 0.79114 0.95313 1.91516 1.90936 1.34043 1.94643 0.91473 0.89423 0.90362 0.91098 0.92162 0.90457 0.90992 0.95315 0.95170 0.79397 0.94136 0.88515 0.88824 0.83004 0.81913 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.94 71.98 0.64 -1.03 16 2 C -0.07 -1.15 2.49 -12.29 -0.03 -1.18 16 3 H 0.11 1.83 5.43 -2.39 -0.01 1.82 16 4 C 0.53 12.69 6.86 87.66 0.60 13.29 16 5 O -0.57 -16.67 14.94 -3.07 -0.05 -16.72 16 6 N -0.61 -14.36 3.33 -811.79 -2.70 -17.06 16 7 C 0.11 2.84 6.87 86.73 0.60 3.44 16 8 C -0.11 -3.16 6.13 31.78 0.19 -2.97 16 9 C -0.10 -2.78 3.10 -9.40 -0.03 -2.81 16 10 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 11 C 0.16 5.76 5.71 86.38 0.49 6.25 16 12 N -0.74 -35.58 5.45 -343.45 -1.87 -37.46 16 13 C -0.24 -12.86 9.99 84.03 0.84 -12.02 16 14 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 15 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 16 N -0.97 -58.35 13.06 21.65 0.28 -58.06 16 17 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 21 C 0.11 2.29 6.20 86.85 0.54 2.82 16 22 C -0.13 -2.37 4.71 -19.82 -0.09 -2.47 16 23 C -0.03 -0.52 8.00 22.26 0.18 -0.34 16 24 C -0.16 -2.47 10.02 22.32 0.22 -2.24 16 25 C 0.12 2.07 7.30 22.37 0.16 2.23 16 26 F -0.14 -2.39 17.27 44.97 0.78 -1.62 16 27 C -0.20 -3.34 10.01 22.36 0.22 -3.11 16 28 C 0.13 2.37 7.25 22.37 0.16 2.53 16 29 F -0.13 -2.69 16.19 44.97 0.73 -1.96 16 30 H 0.07 0.86 7.48 -2.39 -0.02 0.84 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 2.17 8.01 -2.39 -0.02 2.16 16 36 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.03 1.03 8.11 -2.38 -0.02 1.02 16 39 H 0.37 19.20 7.53 -92.71 -0.70 18.50 16 40 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.10 1.67 6.64 -2.39 -0.02 1.65 16 42 H 0.09 1.66 8.04 -2.39 -0.02 1.64 16 43 H 0.15 2.54 6.75 -2.91 -0.02 2.52 16 44 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -66.54 377.42 4.69 -61.85 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.32 Total: 25.35 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 5.17 Total: -1.48 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -4.29 Total: -112.59 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.05 Total: -16.72 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 1.50 Total: -3.58 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -66.54 4.69 -61.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662727394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.186 kcal (2) G-P(sol) polarization free energy of solvation -66.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds