Wall clock time and date at job start Tue Mar 31 2020 21:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47431 * 2 1 4 4 C 1.50703 * 109.47163 * 240.00244 * 2 1 3 5 5 O 1.21286 * 119.99712 * 334.46079 * 4 2 1 6 6 N 1.34773 * 120.00092 * 154.45738 * 4 2 1 7 7 C 1.47021 * 125.64764 * 354.76367 * 6 4 2 8 8 C 1.54323 * 107.27076 * 181.10538 * 7 6 4 9 9 C 1.55154 * 102.94327 * 22.19462 * 8 7 6 10 10 H 1.08999 * 111.00600 * 82.60880 * 9 8 7 11 11 C 1.53005 * 111.00551 * 206.42676 * 9 8 7 12 12 N 1.46500 * 109.46576 * 293.54266 * 11 9 8 13 13 C 1.36939 * 119.99862 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99836 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00249 * 180.02562 * 13 12 11 16 16 N 1.31613 * 119.99779 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00090 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47237 * 269.99876 * 17 15 13 19 19 H 1.48502 * 109.46951 * 30.00175 * 17 15 13 20 20 H 1.48501 * 109.47051 * 149.99528 * 17 15 13 21 21 C 1.47425 * 125.64647 * 174.81950 * 6 4 2 22 22 C 1.50699 * 109.46956 * 120.00294 * 2 1 3 23 23 C 1.38262 * 119.96447 * 59.72680 * 22 2 1 24 24 C 1.38219 * 120.06790 * 179.76347 * 23 22 2 25 25 C 1.38413 * 119.99984 * 0.50920 * 24 23 22 26 26 F 1.35098 * 120.03650 * 179.72002 * 25 24 23 27 27 C 1.38649 * 119.92856 * 359.74459 * 25 24 23 28 28 F 1.35098 * 120.03536 * 180.02562 * 27 25 24 29 29 C 1.38209 * 119.96401 * 239.99571 * 22 2 1 30 30 H 1.09004 * 109.47385 * 184.88284 * 1 2 3 31 31 H 1.08998 * 109.47273 * 304.88706 * 1 2 3 32 32 H 1.09001 * 109.47556 * 64.88609 * 1 2 3 33 33 H 1.08995 * 109.88294 * 61.68573 * 7 6 4 34 34 H 1.09004 * 109.88338 * 300.52385 * 7 6 4 35 35 H 1.09001 * 110.71908 * 263.82906 * 8 7 6 36 36 H 1.09002 * 110.87553 * 140.62777 * 8 7 6 37 37 H 1.09002 * 109.46788 * 173.54985 * 11 9 8 38 38 H 1.08995 * 109.47068 * 53.54033 * 11 9 8 39 39 H 0.96994 * 120.00545 * 359.97438 * 12 11 9 40 40 H 0.97007 * 120.00152 * 179.97438 * 16 15 13 41 41 H 1.08996 * 110.37158 * 36.98610 * 21 6 4 42 42 H 1.09002 * 110.36591 * 274.65911 * 21 6 4 43 43 H 1.07995 * 119.96535 * 0.02562 * 23 22 2 44 44 H 1.07998 * 119.99902 * 180.25199 * 24 23 22 45 45 H 1.07998 * 120.00279 * 359.96274 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.3409 -1.5463 -1.7728 6 7 3.2498 -0.4167 -1.7283 7 6 4.1421 0.6447 -1.2396 8 6 5.4049 0.6261 -2.1265 9 6 4.9098 -0.0704 -3.4215 10 1 4.4089 0.6393 -4.0799 11 6 6.0643 -0.7656 -4.1461 12 7 7.0071 0.2408 -4.6404 13 6 8.1268 -0.1482 -5.3261 14 1 8.3150 -1.1971 -5.5021 15 6 9.0204 0.8053 -5.7941 16 7 8.7913 2.0834 -5.5792 17 14 10.5481 0.2745 -6.7288 18 1 11.6635 0.0588 -5.7725 19 1 10.2688 -0.9893 -7.4568 20 1 10.9264 1.3320 -7.7003 21 6 3.9068 -1.1057 -2.8539 22 6 2.0322 -0.7105 1.2304 23 6 1.6931 -2.0325 1.4513 24 6 2.1566 -2.6877 2.5766 25 6 2.9525 -2.0172 3.4892 26 9 3.4013 -2.6552 4.5922 27 6 3.2882 -0.6899 3.2703 28 9 4.0653 -0.0335 4.1594 29 6 2.8268 -0.0382 2.1397 30 1 -0.3634 -1.0240 0.0875 31 1 -0.3634 0.5878 0.8429 32 1 -0.3634 0.4362 -0.9305 33 1 4.4148 0.4512 -0.2022 34 1 3.6465 1.6122 -1.3205 35 1 6.1983 0.0457 -1.6556 36 1 5.7448 1.6396 -2.3396 37 1 5.6729 -1.3402 -4.9856 38 1 6.5765 -1.4349 -3.4549 39 1 6.8379 1.1828 -4.4827 40 1 9.4160 2.7498 -5.9059 41 1 3.1730 -1.3783 -3.6124 42 1 4.4351 -1.9912 -2.5003 43 1 1.0689 -2.5551 0.7416 44 1 1.8944 -3.7216 2.7459 45 1 3.0880 0.9956 1.9680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662729094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:44 Heat of formation + Delta-G solvation = -93.714989 kcal Electronic energy + Delta-G solvation = -28936.546007 eV Core-core repulsion = 24589.910830 eV Total energy + Delta-G solvation = -4346.635177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.80415 -48.87971 -40.75081 -39.22604 -37.74420 -34.75245 -34.27082 -32.21482 -31.35153 -30.24747 -29.51638 -29.11386 -26.08870 -24.55467 -23.74443 -23.27592 -22.47509 -21.84812 -20.08531 -19.23555 -18.32645 -17.89133 -17.42123 -17.09249 -16.73825 -16.63652 -16.27828 -15.83730 -15.28785 -15.07753 -14.85239 -14.66596 -14.37104 -14.19017 -13.79391 -13.61170 -13.41211 -13.32685 -13.11643 -12.98839 -12.80197 -12.54089 -12.41640 -12.24265 -11.99992 -11.86994 -11.68313 -11.41737 -11.22001 -10.88857 -10.70970 -10.54805 -10.42789 -10.11480 -10.00980 -9.72910 -9.50189 -9.01095 -8.91393 -8.70816 -6.96657 -5.80532 -3.09235 0.42783 0.55036 2.39568 2.77113 2.96536 3.37442 3.41683 3.47181 3.48568 3.90123 4.05071 4.13158 4.28558 4.52261 4.54683 4.60304 4.67192 4.70164 4.79713 4.92676 5.03561 5.21739 5.24636 5.33176 5.36612 5.42129 5.47156 5.52519 5.53052 5.58021 5.60510 5.80891 5.83333 5.90982 5.96995 5.99262 6.07689 6.14677 6.29453 6.34377 6.38934 6.67290 6.79726 7.40954 7.67050 7.98576 8.38410 9.49989 10.06447 10.41364 11.42361 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014314 B = 0.002410 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.600706 B =11614.749691 C =12609.147528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.068 4.068 3 H 0.103 0.897 4 C 0.535 3.465 5 O -0.538 6.538 6 N -0.612 5.612 7 C 0.096 3.904 8 C -0.121 4.121 9 C -0.105 4.105 10 H 0.085 0.915 11 C 0.164 3.836 12 N -0.731 5.731 13 C -0.240 4.240 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.934 5.934 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.282 1.282 20 H -0.291 1.291 21 C 0.112 3.888 22 C -0.056 4.056 23 C -0.087 4.087 24 C -0.121 4.121 25 C 0.067 3.933 26 F -0.129 7.129 27 C 0.071 3.929 28 F -0.127 7.127 29 C -0.117 4.117 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.969 -3.993 18.398 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.089 4.089 3 H 0.121 0.879 4 C 0.323 3.677 5 O -0.415 6.415 6 N -0.345 5.345 7 C -0.027 4.027 8 C -0.159 4.159 9 C -0.125 4.125 10 H 0.103 0.897 11 C 0.036 3.964 12 N -0.375 5.375 13 C -0.371 4.371 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.582 5.582 17 Si 0.738 3.262 18 H -0.217 1.217 19 H -0.207 1.207 20 H -0.218 1.218 21 C -0.011 4.011 22 C -0.057 4.057 23 C -0.105 4.105 24 C -0.140 4.140 25 C 0.047 3.953 26 F -0.107 7.107 27 C 0.050 3.950 28 F -0.105 7.105 29 C -0.136 4.136 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.164 0.836 44 H 0.166 0.834 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.237 -4.559 18.131 26.117 hybrid contribution 1.273 0.189 -0.037 1.288 sum -16.964 -4.369 18.095 25.185 Atomic orbital electron populations 1.21687 0.90929 1.03593 1.02687 1.20301 0.98616 0.99994 0.89981 0.87863 1.19963 0.79896 0.83029 0.84824 1.90703 1.55487 1.34434 1.60922 1.48543 1.16478 1.35167 1.34300 1.22207 0.91461 0.90399 0.98608 1.22638 0.95475 1.02982 0.94758 1.22567 0.96302 0.97182 0.96438 0.89703 1.20545 0.88643 0.92126 0.95060 1.42295 1.23855 1.04639 1.66723 1.19224 0.98300 0.92512 1.27072 0.91166 1.24731 0.99258 0.95263 1.01671 1.69650 1.37916 0.99233 1.51435 0.86186 0.83266 0.77322 0.79402 1.21704 1.20744 1.21761 1.22291 0.95074 0.95498 0.88201 1.19342 0.97153 0.94221 0.94985 1.21099 0.98889 0.93829 0.96660 1.21105 0.97779 1.01354 0.93779 1.17750 1.00778 0.90028 0.86762 1.91540 1.87497 1.81374 1.50290 1.17598 0.96880 0.89754 0.90723 1.91551 1.72092 1.80442 1.66430 1.20996 0.98590 1.01465 0.92545 0.91115 0.91499 0.91399 0.91540 0.91317 0.90160 0.89343 0.95992 0.96001 0.78237 0.93500 0.90276 0.91132 0.83615 0.83397 0.83311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 8.53 37.15 0.32 -0.64 16 2 C -0.07 -0.55 2.46 -92.93 -0.23 -0.78 16 3 H 0.10 0.66 6.97 -51.93 -0.36 0.30 16 4 C 0.54 6.33 6.58 -10.99 -0.07 6.26 16 5 O -0.54 -8.00 16.43 5.55 0.09 -7.91 16 6 N -0.61 -7.33 3.33 -170.52 -0.57 -7.89 16 7 C 0.10 0.99 6.13 -3.07 -0.02 0.97 16 8 C -0.12 -1.59 6.13 -24.90 -0.15 -1.74 16 9 C -0.11 -1.56 3.10 -88.47 -0.27 -1.84 16 10 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 11 C 0.16 3.11 5.71 -4.04 -0.02 3.09 16 12 N -0.73 -17.71 5.45 -59.91 -0.33 -18.04 16 13 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 14 H 0.07 1.88 7.83 -52.48 -0.41 1.46 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 17 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 21 C 0.11 1.50 6.40 -2.53 -0.02 1.48 16 22 C -0.06 -0.46 4.77 -104.62 -0.50 -0.96 16 23 C -0.09 -0.71 8.76 -39.58 -0.35 -1.05 16 24 C -0.12 -0.96 10.02 -39.52 -0.40 -1.36 16 25 C 0.07 0.64 7.31 -39.37 -0.29 0.35 16 26 F -0.13 -1.38 17.18 2.25 0.04 -1.34 16 27 C 0.07 0.68 7.31 -39.36 -0.29 0.39 16 28 F -0.13 -1.37 17.18 2.25 0.04 -1.33 16 29 C -0.12 -0.92 9.52 -39.53 -0.38 -1.30 16 30 H 0.07 0.55 7.09 -51.93 -0.37 0.18 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.60 8.02 -51.93 -0.42 0.19 16 34 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 35 H 0.08 1.13 8.01 -51.93 -0.42 0.71 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.42 8.11 -51.93 -0.42 0.00 16 39 H 0.38 9.68 7.53 -40.82 -0.31 9.37 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.08 1.10 7.99 -51.93 -0.41 0.69 16 42 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 43 H 0.15 1.17 7.53 -52.49 -0.40 0.77 16 44 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 45 H 0.15 0.87 7.94 -52.49 -0.42 0.45 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -31.95 381.78 -8.61 -40.56 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.43 Total: 4.31 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -2.91 Total: -4.32 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.17 Total: -52.81 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.91 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.08 Total: -2.67 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.95 -8.61 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662729094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.154 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds