Wall clock time and date at job start Tue Mar 31 2020 21:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47431 * 2 1 4 4 C 1.50703 * 109.47163 * 240.00244 * 2 1 3 5 5 O 1.21286 * 119.99712 * 334.46079 * 4 2 1 6 6 N 1.34773 * 120.00092 * 154.45738 * 4 2 1 7 7 C 1.47021 * 125.64764 * 354.76367 * 6 4 2 8 8 C 1.54323 * 107.27076 * 181.10538 * 7 6 4 9 9 C 1.55154 * 102.94327 * 22.19462 * 8 7 6 10 10 H 1.08999 * 111.00600 * 82.60880 * 9 8 7 11 11 C 1.53005 * 111.00551 * 206.42676 * 9 8 7 12 12 N 1.46500 * 109.46576 * 293.54266 * 11 9 8 13 13 C 1.36939 * 119.99862 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99836 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00249 * 180.02562 * 13 12 11 16 16 N 1.31613 * 119.99779 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00090 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47237 * 269.99876 * 17 15 13 19 19 H 1.48502 * 109.46951 * 30.00175 * 17 15 13 20 20 H 1.48501 * 109.47051 * 149.99528 * 17 15 13 21 21 C 1.47425 * 125.64647 * 174.81950 * 6 4 2 22 22 C 1.50699 * 109.46956 * 120.00294 * 2 1 3 23 23 C 1.38262 * 119.96447 * 59.72680 * 22 2 1 24 24 C 1.38219 * 120.06790 * 179.76347 * 23 22 2 25 25 C 1.38413 * 119.99984 * 0.50920 * 24 23 22 26 26 F 1.35098 * 120.03650 * 179.72002 * 25 24 23 27 27 C 1.38649 * 119.92856 * 359.74459 * 25 24 23 28 28 F 1.35098 * 120.03536 * 180.02562 * 27 25 24 29 29 C 1.38209 * 119.96401 * 239.99571 * 22 2 1 30 30 H 1.09004 * 109.47385 * 184.88284 * 1 2 3 31 31 H 1.08998 * 109.47273 * 304.88706 * 1 2 3 32 32 H 1.09001 * 109.47556 * 64.88609 * 1 2 3 33 33 H 1.08995 * 109.88294 * 61.68573 * 7 6 4 34 34 H 1.09004 * 109.88338 * 300.52385 * 7 6 4 35 35 H 1.09001 * 110.71908 * 263.82906 * 8 7 6 36 36 H 1.09002 * 110.87553 * 140.62777 * 8 7 6 37 37 H 1.09002 * 109.46788 * 173.54985 * 11 9 8 38 38 H 1.08995 * 109.47068 * 53.54033 * 11 9 8 39 39 H 0.96994 * 120.00545 * 359.97438 * 12 11 9 40 40 H 0.97007 * 120.00152 * 179.97438 * 16 15 13 41 41 H 1.08996 * 110.37158 * 36.98610 * 21 6 4 42 42 H 1.09002 * 110.36591 * 274.65911 * 21 6 4 43 43 H 1.07995 * 119.96535 * 0.02562 * 23 22 2 44 44 H 1.07998 * 119.99902 * 180.25199 * 24 23 22 45 45 H 1.07998 * 120.00279 * 359.96274 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.3409 -1.5463 -1.7728 6 7 3.2498 -0.4167 -1.7283 7 6 4.1421 0.6447 -1.2396 8 6 5.4049 0.6261 -2.1265 9 6 4.9098 -0.0704 -3.4215 10 1 4.4089 0.6393 -4.0799 11 6 6.0643 -0.7656 -4.1461 12 7 7.0071 0.2408 -4.6404 13 6 8.1268 -0.1482 -5.3261 14 1 8.3150 -1.1971 -5.5021 15 6 9.0204 0.8053 -5.7941 16 7 8.7913 2.0834 -5.5792 17 14 10.5481 0.2745 -6.7288 18 1 11.6635 0.0588 -5.7725 19 1 10.2688 -0.9893 -7.4568 20 1 10.9264 1.3320 -7.7003 21 6 3.9068 -1.1057 -2.8539 22 6 2.0322 -0.7105 1.2304 23 6 1.6931 -2.0325 1.4513 24 6 2.1566 -2.6877 2.5766 25 6 2.9525 -2.0172 3.4892 26 9 3.4013 -2.6552 4.5922 27 6 3.2882 -0.6899 3.2703 28 9 4.0653 -0.0335 4.1594 29 6 2.8268 -0.0382 2.1397 30 1 -0.3634 -1.0240 0.0875 31 1 -0.3634 0.5878 0.8429 32 1 -0.3634 0.4362 -0.9305 33 1 4.4148 0.4512 -0.2022 34 1 3.6465 1.6122 -1.3205 35 1 6.1983 0.0457 -1.6556 36 1 5.7448 1.6396 -2.3396 37 1 5.6729 -1.3402 -4.9856 38 1 6.5765 -1.4349 -3.4549 39 1 6.8379 1.1828 -4.4827 40 1 9.4160 2.7498 -5.9059 41 1 3.1730 -1.3783 -3.6124 42 1 4.4351 -1.9912 -2.5003 43 1 1.0689 -2.5551 0.7416 44 1 1.8944 -3.7216 2.7459 45 1 3.0880 0.9956 1.9680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662729094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:43 Heat of formation + Delta-G solvation = -111.461967 kcal Electronic energy + Delta-G solvation = -28937.315574 eV Core-core repulsion = 24589.910830 eV Total energy + Delta-G solvation = -4347.404744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.55025 -49.63431 -41.59906 -40.02845 -38.80568 -36.43612 -35.02735 -33.83105 -31.97859 -31.78920 -30.33602 -30.08380 -27.46191 -25.69005 -24.40593 -24.37627 -23.91735 -22.68869 -21.35120 -20.09102 -19.17911 -19.02366 -18.64576 -18.11978 -17.52357 -17.43794 -17.35247 -16.66788 -16.47342 -16.05580 -15.92427 -15.55969 -15.42754 -15.28876 -14.97200 -14.97140 -14.67031 -14.18048 -14.10488 -13.91790 -13.87065 -13.69598 -13.26978 -13.00884 -12.96872 -12.92671 -12.74556 -12.62139 -12.49166 -12.22180 -12.12488 -12.03582 -11.75567 -11.66585 -11.60021 -10.97314 -10.92285 -10.13654 -9.71799 -9.67243 -8.98510 -7.94638 -5.22636 -0.24871 -0.06590 1.48937 1.49694 1.51369 1.58123 1.90310 2.27493 2.56797 2.72181 3.21187 3.34573 3.40037 3.40585 3.55384 3.65150 3.73036 3.89448 3.91182 4.01452 4.10638 4.28201 4.29833 4.32510 4.45026 4.55654 4.62477 4.66472 4.73355 4.79254 4.80606 4.84825 4.90849 4.93549 4.97945 5.02590 5.06729 5.22131 5.24186 5.25797 5.37637 5.42016 5.51107 5.64760 6.28081 6.49773 7.06995 7.35408 8.10226 8.34698 9.28684 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014314 B = 0.002410 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.600706 B =11614.749691 C =12609.147528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.059 4.059 3 H 0.130 0.870 4 C 0.532 3.468 5 O -0.573 6.573 6 N -0.614 5.614 7 C 0.102 3.898 8 C -0.118 4.118 9 C -0.097 4.097 10 H 0.079 0.921 11 C 0.164 3.836 12 N -0.741 5.741 13 C -0.246 4.246 14 H 0.073 0.927 15 C -0.072 4.072 16 N -0.966 5.966 17 Si 0.970 3.030 18 H -0.287 1.287 19 H -0.272 1.272 20 H -0.295 1.295 21 C 0.119 3.881 22 C -0.056 4.056 23 C -0.089 4.089 24 C -0.117 4.117 25 C 0.051 3.949 26 F -0.140 7.140 27 C 0.055 3.945 28 F -0.138 7.138 29 C -0.106 4.106 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.018 0.982 38 H 0.024 0.976 39 H 0.377 0.623 40 H 0.252 0.748 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.146 0.854 44 H 0.166 0.834 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.667 -3.787 19.213 27.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.080 4.080 3 H 0.148 0.852 4 C 0.322 3.678 5 O -0.453 6.453 6 N -0.347 5.347 7 C -0.020 4.020 8 C -0.156 4.156 9 C -0.116 4.116 10 H 0.097 0.903 11 C 0.037 3.963 12 N -0.384 5.384 13 C -0.378 4.378 14 H 0.091 0.909 15 C -0.265 4.265 16 N -0.617 5.617 17 Si 0.799 3.201 18 H -0.214 1.214 19 H -0.197 1.197 20 H -0.222 1.222 21 C -0.005 4.005 22 C -0.057 4.057 23 C -0.107 4.107 24 C -0.136 4.136 25 C 0.030 3.970 26 F -0.119 7.119 27 C 0.035 3.965 28 F -0.116 7.116 29 C -0.125 4.125 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.036 0.964 38 H 0.042 0.958 39 H 0.209 0.791 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.164 0.836 44 H 0.183 0.817 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -18.951 -4.378 18.967 27.167 hybrid contribution 1.436 0.049 -0.302 1.469 sum -17.515 -4.329 18.665 25.960 Atomic orbital electron populations 1.21708 0.90228 1.03499 1.03398 1.20324 0.99113 1.00728 0.87804 0.85208 1.20629 0.79200 0.82587 0.85422 1.90691 1.56342 1.36049 1.62177 1.48616 1.16848 1.35399 1.33789 1.22265 0.89853 0.91088 0.98750 1.22566 0.96746 1.02043 0.94265 1.22349 0.95120 0.97320 0.96857 0.90292 1.20648 0.89087 0.91428 0.95130 1.42460 1.24079 1.05258 1.66599 1.19604 0.99050 0.92670 1.26434 0.90893 1.25500 1.02284 0.95404 1.03272 1.69790 1.38914 1.00101 1.52902 0.85190 0.79811 0.77033 0.78029 1.21389 1.19681 1.22181 1.22074 0.94528 0.95100 0.88753 1.19365 0.97199 0.94170 0.94989 1.21205 0.98757 0.94140 0.96591 1.21265 0.97003 1.02134 0.93176 1.18014 1.01591 0.90420 0.86927 1.91507 1.87770 1.81632 1.50961 1.17833 0.97454 0.89909 0.91327 1.91522 1.72521 1.80631 1.66944 1.21182 0.97462 1.02432 0.91405 0.91998 0.89222 0.91922 0.89421 0.88759 0.91139 0.90053 0.96376 0.95783 0.79081 0.93967 0.91076 0.91141 0.83587 0.81690 0.80804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.53 71.98 0.61 -0.95 16 2 C -0.06 -0.78 2.46 -12.29 -0.03 -0.81 16 3 H 0.13 1.06 6.97 -2.39 -0.02 1.04 16 4 C 0.53 11.46 6.58 87.66 0.58 12.04 16 5 O -0.57 -16.41 16.43 -3.05 -0.05 -16.46 16 6 N -0.61 -13.37 3.33 -811.78 -2.70 -16.07 16 7 C 0.10 1.80 6.13 86.73 0.53 2.33 16 8 C -0.12 -2.95 6.13 31.78 0.19 -2.76 16 9 C -0.10 -2.81 3.10 -9.40 -0.03 -2.84 16 10 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 11 C 0.16 6.19 5.71 86.38 0.49 6.69 16 12 N -0.74 -36.10 5.45 -343.44 -1.87 -37.97 16 13 C -0.25 -13.45 9.99 84.03 0.84 -12.61 16 14 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 15 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 16 N -0.97 -57.61 13.06 21.65 0.28 -57.33 16 17 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 21 C 0.12 3.06 6.40 86.86 0.56 3.62 16 22 C -0.06 -0.76 4.77 -19.87 -0.09 -0.85 16 23 C -0.09 -1.28 8.76 22.27 0.20 -1.09 16 24 C -0.12 -1.68 10.02 22.31 0.22 -1.46 16 25 C 0.05 0.91 7.31 22.41 0.16 1.08 16 26 F -0.14 -2.95 17.18 44.97 0.77 -2.18 16 27 C 0.05 0.96 7.31 22.41 0.16 1.12 16 28 F -0.14 -2.82 17.18 44.97 0.77 -2.04 16 29 C -0.11 -1.35 9.52 22.31 0.21 -1.14 16 30 H 0.06 0.86 7.09 -2.38 -0.02 0.84 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.24 8.02 -2.39 -0.02 1.22 16 34 H 0.09 1.25 7.92 -2.38 -0.02 1.23 16 35 H 0.07 1.90 8.01 -2.39 -0.02 1.88 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.02 0.91 8.11 -2.39 -0.02 0.89 16 39 H 0.38 19.22 7.53 -92.71 -0.70 18.52 16 40 H 0.25 14.56 8.31 -92.70 -0.77 13.78 16 41 H 0.07 1.95 7.99 -2.39 -0.02 1.93 16 42 H 0.07 1.82 8.04 -2.39 -0.02 1.80 16 43 H 0.15 2.13 7.53 -2.91 -0.02 2.11 16 44 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.17 1.28 7.94 -2.91 -0.02 1.25 16 Total: -1.00 -68.88 381.78 4.62 -64.26 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.31 Total: 21.55 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 5.08 Total: -1.23 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -4.29 Total: -111.36 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.05 Total: -16.46 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 1.55 Total: -4.22 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -68.88 4.62 -64.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662729094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.203 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds