Wall clock time and date at job start Tue Mar 31 2020 21:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46805 * 2 1 4 4 C 1.50695 * 109.47170 * 119.99883 * 2 1 3 5 5 O 1.21283 * 119.99861 * 119.99868 * 4 2 1 6 6 N 1.34776 * 120.00438 * 300.00469 * 4 2 1 7 7 C 1.46490 * 120.00546 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.47457 * 185.13534 * 7 6 4 9 9 H 1.09004 * 109.87477 * 303.56877 * 8 7 6 10 10 C 1.54322 * 109.88512 * 64.58533 * 8 7 6 11 11 C 1.55159 * 102.94351 * 141.61119 * 10 8 7 12 12 C 1.54917 * 101.58027 * 324.50150 * 11 10 8 13 13 N 1.47027 * 109.88647 * 182.39759 * 8 7 6 14 14 C 1.36936 * 125.64719 * 61.61821 * 13 8 7 15 15 H 1.08005 * 119.99976 * 14.76069 * 14 13 8 16 16 C 1.38812 * 120.00102 * 194.76583 * 14 13 8 17 17 N 1.31627 * 120.00031 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00223 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47104 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47481 * 119.99309 * 18 16 14 21 21 H 1.48505 * 109.46776 * 239.99865 * 18 16 14 22 22 C 1.50699 * 109.47114 * 240.00402 * 2 1 3 23 23 C 1.38236 * 119.98582 * 300.27067 * 22 2 1 24 24 C 1.38187 * 120.04632 * 180.28109 * 23 22 2 25 25 C 1.38498 * 120.02680 * 359.70108 * 24 23 22 26 26 F 1.35095 * 120.00982 * 180.02562 * 25 24 23 27 27 C 1.38397 * 119.97336 * 0.02562 * 25 24 23 28 28 C 1.38436 * 119.95200 * 0.02562 * 27 25 24 29 29 F 1.35096 * 120.01147 * 179.97438 * 28 27 25 30 30 H 1.08997 * 109.47292 * 299.99611 * 1 2 3 31 31 H 1.09000 * 109.47131 * 60.00293 * 1 2 3 32 32 H 1.09000 * 109.46551 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99543 * 359.97438 * 6 4 2 34 34 H 1.09005 * 109.47125 * 305.13423 * 7 6 4 35 35 H 1.09002 * 109.47708 * 65.13207 * 7 6 4 36 36 H 1.08997 * 110.72630 * 259.97752 * 10 8 7 37 37 H 1.09002 * 110.71786 * 23.25676 * 10 8 7 38 38 H 1.08998 * 111.00534 * 82.57328 * 11 10 8 39 39 H 1.08997 * 111.00636 * 206.42793 * 11 10 8 40 40 H 1.09000 * 110.36232 * 155.84942 * 12 11 10 41 41 H 1.08998 * 110.36351 * 278.05730 * 12 11 10 42 42 H 0.96995 * 119.99889 * 180.02562 * 17 16 14 43 43 H 1.07992 * 119.97670 * 359.97438 * 23 22 2 44 44 H 1.07997 * 119.98311 * 179.72746 * 24 23 22 45 45 H 1.08000 * 120.02229 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 2.1955 -0.9402 3.6507 8 6 1.5827 -0.2976 4.8966 9 1 1.8117 0.7680 4.9147 10 6 0.0536 -0.5058 4.8965 11 6 -0.2611 -0.7712 6.3924 12 6 0.9920 -1.5658 6.8376 13 7 2.1115 -0.9463 6.1054 14 6 3.4262 -0.9713 6.4875 15 1 4.1355 -0.2999 6.0264 16 6 3.8474 -1.8597 7.4674 17 7 2.9830 -2.6777 8.0297 18 14 5.6407 -1.8934 7.9892 19 1 6.4016 -0.8827 7.2116 20 1 5.7408 -1.5821 9.4377 21 1 6.2056 -3.2427 7.7326 22 6 2.0323 -0.7103 -1.2305 23 6 1.6936 -2.0321 -1.4519 24 6 2.1583 -2.6864 -2.5769 25 6 2.9590 -2.0165 -3.4870 26 9 3.4127 -2.6564 -4.5870 27 6 3.2941 -0.6915 -3.2692 28 6 2.8288 -0.0374 -2.1413 29 9 3.1556 1.2559 -1.9273 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.1493 0.5388 2.5436 34 1 1.9097 -1.9912 3.6060 35 1 3.2816 -0.8608 3.6978 36 1 -0.4579 0.3915 4.5481 37 1 -0.2182 -1.3674 4.2866 38 1 -0.3475 0.1641 6.9455 39 1 -1.1639 -1.3723 6.5011 40 1 1.1412 -1.4674 7.9129 41 1 0.8922 -2.6161 6.5637 42 1 3.2772 -3.2982 8.7147 43 1 1.0694 -2.5552 -0.7427 44 1 1.8966 -3.7203 -2.7466 45 1 3.9187 -0.1685 -3.9782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663547954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:13 Heat of formation + Delta-G solvation = -84.998184 kcal Electronic energy + Delta-G solvation = -29143.038963 eV Core-core repulsion = 24796.781775 eV Total energy + Delta-G solvation = -4346.257188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.27272 -49.23642 -40.25050 -38.71500 -37.60776 -34.40134 -34.19578 -32.50051 -31.06762 -29.89652 -29.36710 -28.46505 -25.35075 -24.72833 -23.88304 -23.33924 -22.08708 -20.38329 -19.97968 -19.41825 -18.50478 -17.72360 -17.09661 -16.59103 -16.31667 -16.12752 -15.91181 -15.57279 -15.50909 -14.98405 -14.78414 -14.64439 -14.37865 -14.22914 -13.87901 -13.48753 -13.25829 -13.08965 -12.89833 -12.59962 -12.25204 -12.10118 -11.97941 -11.92621 -11.78507 -11.48708 -11.43579 -11.30655 -10.96134 -10.82572 -10.27930 -10.11180 -9.97106 -9.87800 -9.76566 -9.59921 -9.29078 -8.86005 -8.70993 -8.60551 -6.87030 -5.79854 -3.16598 0.67246 0.78685 2.77700 3.02545 3.37425 3.43959 3.46011 3.48015 3.60741 4.08930 4.20615 4.30511 4.46256 4.56955 4.74992 4.86131 4.92806 5.01462 5.28462 5.34212 5.36498 5.45642 5.49383 5.54457 5.59130 5.60351 5.66259 5.76319 5.77322 5.86026 6.01860 6.02119 6.09868 6.20029 6.42042 6.49018 6.51150 6.58205 6.66362 6.77706 7.01825 7.48175 7.58023 7.72346 7.76470 8.22330 8.41204 9.14520 9.75022 10.41973 11.32187 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.002614 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.751513 B =10708.452883 C =11573.000392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 H 0.109 0.891 4 C 0.512 3.488 5 O -0.534 6.534 6 N -0.719 5.719 7 C 0.109 3.891 8 C 0.152 3.848 9 H 0.037 0.963 10 C -0.125 4.125 11 C -0.149 4.149 12 C 0.172 3.828 13 N -0.588 5.588 14 C -0.234 4.234 15 H 0.076 0.924 16 C -0.001 4.001 17 N -0.915 5.915 18 Si 0.910 3.090 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.289 1.289 22 C -0.105 4.105 23 C -0.027 4.027 24 C -0.162 4.162 25 C 0.127 3.873 26 F -0.134 7.134 27 C -0.195 4.195 28 C 0.135 3.865 29 F -0.130 7.130 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.396 0.604 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.026 0.974 42 H 0.253 0.747 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.416 5.993 -20.302 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 H 0.127 0.873 4 C 0.296 3.704 5 O -0.411 6.411 6 N -0.370 5.370 7 C -0.016 4.016 8 C 0.043 3.957 9 H 0.055 0.945 10 C -0.163 4.163 11 C -0.188 4.188 12 C 0.047 3.953 13 N -0.313 5.313 14 C -0.362 4.362 15 H 0.094 0.906 16 C -0.198 4.198 17 N -0.561 5.561 18 Si 0.740 3.260 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.216 1.216 22 C -0.107 4.107 23 C -0.045 4.045 24 C -0.181 4.181 25 C 0.107 3.893 26 F -0.112 7.112 27 C -0.214 4.214 28 C 0.116 3.884 29 F -0.108 7.108 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.229 0.771 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.727 5.169 -20.190 22.227 hybrid contribution 1.036 0.358 0.133 1.104 sum -6.690 5.527 -20.057 21.854 Atomic orbital electron populations 1.21802 0.91408 1.03335 1.03184 1.20248 0.98163 1.00711 0.90549 0.87302 1.20257 0.80775 0.84902 0.84419 1.90738 1.37521 1.26213 1.86587 1.46107 1.53131 1.31822 1.05962 1.22256 0.99764 0.96891 0.82665 1.21132 0.91817 0.95798 0.86939 0.94538 1.22599 0.95650 1.00365 0.97721 1.23009 0.99763 1.00663 0.95325 1.21449 0.82688 0.93456 0.97665 1.44487 1.03969 1.63532 1.19286 1.19025 0.83476 1.15245 1.18479 0.90617 1.24921 0.97907 0.97090 0.99918 1.69947 1.32482 1.24502 1.29150 0.86076 0.84374 0.77508 0.78005 1.20359 1.21687 1.21575 1.19437 1.00118 0.95341 0.95799 1.20706 0.96533 0.92292 0.94978 1.21194 1.00332 1.01578 0.95018 1.17292 0.96938 0.90247 0.84787 1.91523 1.87269 1.81491 1.50932 1.20918 1.06003 0.94659 0.99837 1.17059 0.97415 0.79106 0.94865 1.91509 1.90867 1.33857 1.94592 0.91105 0.91230 0.91552 0.77090 0.91536 0.91564 0.92416 0.91834 0.92301 0.92342 0.91000 0.95596 0.93632 0.83973 0.83936 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.90 37.16 0.33 -0.71 16 2 C -0.08 -0.78 2.88 -92.93 -0.27 -1.05 16 3 H 0.11 1.02 7.13 -51.93 -0.37 0.65 16 4 C 0.51 7.34 7.03 -10.99 -0.08 7.26 16 5 O -0.53 -9.95 15.12 5.55 0.08 -9.86 16 6 N -0.72 -9.96 5.22 -60.30 -0.31 -10.27 16 7 C 0.11 2.02 5.07 -4.05 -0.02 2.00 16 8 C 0.15 2.87 3.22 -66.95 -0.22 2.66 16 9 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 10 C -0.13 -1.96 6.10 -24.90 -0.15 -2.12 16 11 C -0.15 -2.62 7.09 -24.58 -0.17 -2.80 16 12 C 0.17 4.01 5.41 -2.53 -0.01 4.00 16 13 N -0.59 -14.28 3.13 -162.57 -0.51 -14.79 16 14 C -0.23 -6.33 9.76 -15.06 -0.15 -6.47 16 15 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 16 C 0.00 -0.03 5.47 -17.43 -0.10 -0.12 16 17 N -0.91 -26.37 10.58 55.49 0.59 -25.79 16 18 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C -0.11 -1.17 4.40 -104.54 -0.46 -1.63 16 23 C -0.03 -0.29 7.93 -39.60 -0.31 -0.60 16 24 C -0.16 -1.60 10.03 -39.50 -0.40 -1.99 16 25 C 0.13 1.31 7.30 -39.43 -0.29 1.02 16 26 F -0.13 -1.41 17.27 2.25 0.04 -1.37 16 27 C -0.19 -1.97 10.01 -39.45 -0.39 -2.36 16 28 C 0.14 1.49 7.24 -39.43 -0.29 1.21 16 29 F -0.13 -1.46 16.19 2.25 0.04 -1.42 16 30 H 0.07 0.44 7.56 -51.93 -0.39 0.05 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.50 7.37 -51.93 -0.38 0.12 16 33 H 0.40 4.22 7.75 -40.82 -0.32 3.90 16 34 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16 35 H 0.07 1.42 7.92 -51.93 -0.41 1.01 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.98 7.81 -51.93 -0.41 0.58 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.87 6.94 -51.93 -0.36 1.51 16 41 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.14 1.42 7.51 -52.49 -0.39 1.03 16 44 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -31.71 375.30 -8.79 -40.51 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.38 Total: 2.08 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.97 Total: -1.71 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.24 Total: -50.85 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.08 Total: -2.79 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.71 -8.79 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663547954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.491 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds