Wall clock time and date at job start Tue Mar 31 2020 21:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46805 * 2 1 4 4 C 1.50695 * 109.47170 * 119.99883 * 2 1 3 5 5 O 1.21283 * 119.99861 * 119.99868 * 4 2 1 6 6 N 1.34776 * 120.00438 * 300.00469 * 4 2 1 7 7 C 1.46490 * 120.00546 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.47457 * 185.13534 * 7 6 4 9 9 H 1.09004 * 109.87477 * 303.56877 * 8 7 6 10 10 C 1.54322 * 109.88512 * 64.58533 * 8 7 6 11 11 C 1.55159 * 102.94351 * 141.61119 * 10 8 7 12 12 C 1.54917 * 101.58027 * 324.50150 * 11 10 8 13 13 N 1.47027 * 109.88647 * 182.39759 * 8 7 6 14 14 C 1.36936 * 125.64719 * 61.61821 * 13 8 7 15 15 H 1.08005 * 119.99976 * 14.76069 * 14 13 8 16 16 C 1.38812 * 120.00102 * 194.76583 * 14 13 8 17 17 N 1.31627 * 120.00031 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00223 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47104 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47481 * 119.99309 * 18 16 14 21 21 H 1.48505 * 109.46776 * 239.99865 * 18 16 14 22 22 C 1.50699 * 109.47114 * 240.00402 * 2 1 3 23 23 C 1.38236 * 119.98582 * 300.27067 * 22 2 1 24 24 C 1.38187 * 120.04632 * 180.28109 * 23 22 2 25 25 C 1.38498 * 120.02680 * 359.70108 * 24 23 22 26 26 F 1.35095 * 120.00982 * 180.02562 * 25 24 23 27 27 C 1.38397 * 119.97336 * 0.02562 * 25 24 23 28 28 C 1.38436 * 119.95200 * 0.02562 * 27 25 24 29 29 F 1.35096 * 120.01147 * 179.97438 * 28 27 25 30 30 H 1.08997 * 109.47292 * 299.99611 * 1 2 3 31 31 H 1.09000 * 109.47131 * 60.00293 * 1 2 3 32 32 H 1.09000 * 109.46551 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99543 * 359.97438 * 6 4 2 34 34 H 1.09005 * 109.47125 * 305.13423 * 7 6 4 35 35 H 1.09002 * 109.47708 * 65.13207 * 7 6 4 36 36 H 1.08997 * 110.72630 * 259.97752 * 10 8 7 37 37 H 1.09002 * 110.71786 * 23.25676 * 10 8 7 38 38 H 1.08998 * 111.00534 * 82.57328 * 11 10 8 39 39 H 1.08997 * 111.00636 * 206.42793 * 11 10 8 40 40 H 1.09000 * 110.36232 * 155.84942 * 12 11 10 41 41 H 1.08998 * 110.36351 * 278.05730 * 12 11 10 42 42 H 0.96995 * 119.99889 * 180.02562 * 17 16 14 43 43 H 1.07992 * 119.97670 * 359.97438 * 23 22 2 44 44 H 1.07997 * 119.98311 * 179.72746 * 24 23 22 45 45 H 1.08000 * 120.02229 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 2.1955 -0.9402 3.6507 8 6 1.5827 -0.2976 4.8966 9 1 1.8117 0.7680 4.9147 10 6 0.0536 -0.5058 4.8965 11 6 -0.2611 -0.7712 6.3924 12 6 0.9920 -1.5658 6.8376 13 7 2.1115 -0.9463 6.1054 14 6 3.4262 -0.9713 6.4875 15 1 4.1355 -0.2999 6.0264 16 6 3.8474 -1.8597 7.4674 17 7 2.9830 -2.6777 8.0297 18 14 5.6407 -1.8934 7.9892 19 1 6.4016 -0.8827 7.2116 20 1 5.7408 -1.5821 9.4377 21 1 6.2056 -3.2427 7.7326 22 6 2.0323 -0.7103 -1.2305 23 6 1.6936 -2.0321 -1.4519 24 6 2.1583 -2.6864 -2.5769 25 6 2.9590 -2.0165 -3.4870 26 9 3.4127 -2.6564 -4.5870 27 6 3.2941 -0.6915 -3.2692 28 6 2.8288 -0.0374 -2.1413 29 9 3.1556 1.2559 -1.9273 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.1493 0.5388 2.5436 34 1 1.9097 -1.9912 3.6060 35 1 3.2816 -0.8608 3.6978 36 1 -0.4579 0.3915 4.5481 37 1 -0.2182 -1.3674 4.2866 38 1 -0.3475 0.1641 6.9455 39 1 -1.1639 -1.3723 6.5011 40 1 1.1412 -1.4674 7.9129 41 1 0.8922 -2.6161 6.5637 42 1 3.2772 -3.2982 8.7147 43 1 1.0694 -2.5552 -0.7427 44 1 1.8966 -3.7203 -2.7466 45 1 3.9187 -0.1685 -3.9782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663547954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:12 Heat of formation + Delta-G solvation = -103.599658 kcal Electronic energy + Delta-G solvation = -29143.845583 eV Core-core repulsion = 24796.781775 eV Total energy + Delta-G solvation = -4347.063809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.10574 -50.04677 -41.31623 -39.79290 -39.08287 -35.75700 -35.15687 -34.36809 -31.85880 -31.44732 -30.66986 -29.70128 -26.78790 -26.11564 -25.20625 -24.18056 -23.07708 -21.99949 -21.29270 -20.84921 -19.32162 -18.89696 -18.45985 -17.82864 -17.45927 -17.00691 -16.91947 -16.74934 -16.46558 -16.34551 -16.10365 -15.78546 -15.60251 -15.51108 -15.09999 -14.71098 -14.54733 -14.01899 -13.82807 -13.77811 -13.65655 -13.43684 -13.26763 -12.99831 -12.96551 -12.85922 -12.77173 -12.68227 -12.25439 -12.15228 -11.98954 -11.86259 -11.69975 -11.47391 -11.37367 -10.83595 -10.69109 -10.09024 -10.03783 -9.67833 -8.85489 -7.89628 -5.26693 -0.14269 -0.00534 1.42660 1.44848 1.53846 1.63845 2.06556 2.40989 2.51366 2.80334 3.27247 3.30497 3.41139 3.51380 3.70026 3.82536 3.92313 3.99882 4.01971 4.10257 4.15508 4.28471 4.29135 4.47852 4.56386 4.68010 4.75583 4.77973 4.86124 4.87631 4.93254 4.99157 5.02368 5.04238 5.17279 5.21568 5.24138 5.30900 5.39849 5.47670 5.59882 5.67592 5.71388 5.79259 6.23010 6.60635 7.08904 7.29093 7.76337 8.41732 9.21414 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.002614 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.751513 B =10708.452883 C =11573.000392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 H 0.123 0.877 4 C 0.511 3.489 5 O -0.581 6.581 6 N -0.703 5.703 7 C 0.131 3.869 8 C 0.147 3.853 9 H 0.051 0.949 10 C -0.111 4.111 11 C -0.134 4.134 12 C 0.173 3.827 13 N -0.611 5.611 14 C -0.237 4.237 15 H 0.075 0.925 16 C -0.060 4.060 17 N -0.945 5.945 18 Si 0.969 3.031 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.296 1.296 22 C -0.116 4.116 23 C -0.036 4.036 24 C -0.161 4.161 25 C 0.118 3.882 26 F -0.136 7.136 27 C -0.194 4.194 28 C 0.123 3.877 29 F -0.132 7.132 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.416 0.584 34 H 0.037 0.963 35 H 0.028 0.972 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.034 0.966 41 H -0.009 1.009 42 H 0.247 0.753 43 H 0.145 0.855 44 H 0.160 0.840 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.001 7.981 -22.039 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.085 4.085 3 H 0.141 0.859 4 C 0.298 3.702 5 O -0.461 6.461 6 N -0.356 5.356 7 C 0.004 3.996 8 C 0.040 3.960 9 H 0.069 0.931 10 C -0.148 4.148 11 C -0.172 4.172 12 C 0.048 3.952 13 N -0.336 5.336 14 C -0.367 4.367 15 H 0.093 0.907 16 C -0.254 4.254 17 N -0.593 5.593 18 Si 0.798 3.202 19 H -0.192 1.192 20 H -0.215 1.215 21 H -0.223 1.223 22 C -0.118 4.118 23 C -0.054 4.054 24 C -0.180 4.180 25 C 0.099 3.901 26 F -0.114 7.114 27 C -0.213 4.213 28 C 0.104 3.896 29 F -0.111 7.111 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.254 0.746 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.126 0.874 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.052 0.948 41 H 0.009 0.991 42 H 0.057 0.943 43 H 0.163 0.837 44 H 0.178 0.822 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.347 7.221 -21.964 24.939 hybrid contribution 1.543 -0.254 0.599 1.674 sum -7.804 6.967 -21.365 23.789 Atomic orbital electron populations 1.21860 0.88708 1.03862 1.05025 1.20246 1.00219 1.00363 0.87695 0.85905 1.21008 0.79615 0.84252 0.85342 1.90723 1.39582 1.28497 1.87280 1.45799 1.53141 1.32109 1.04549 1.21646 0.97466 0.95790 0.84677 1.21359 0.94219 0.95615 0.84836 0.93126 1.22595 0.92899 1.02909 0.96414 1.22874 0.97446 1.00392 0.96533 1.21264 0.85530 0.92808 0.95596 1.44751 1.03430 1.63613 1.21780 1.19313 0.85058 1.14575 1.17708 0.90680 1.25663 1.01449 0.97514 1.00729 1.70143 1.33860 1.25416 1.29863 0.85148 0.80335 0.77131 0.77591 1.19235 1.21511 1.22278 1.19620 1.00319 0.95713 0.96143 1.20820 0.96924 0.92362 0.95315 1.21418 0.99625 1.02412 0.94496 1.17400 0.97314 0.90490 0.84933 1.91518 1.87343 1.81541 1.51044 1.21106 1.05698 0.94664 0.99848 1.17150 0.97871 0.79195 0.95383 1.91499 1.90958 1.33953 1.94654 0.89271 0.89411 0.91731 0.74639 0.94413 0.95303 0.87422 0.91429 0.91181 0.89910 0.94791 0.99068 0.94347 0.83708 0.82191 0.81908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.90 71.98 0.64 -0.91 16 2 C -0.06 -1.17 2.88 -12.29 -0.04 -1.21 16 3 H 0.12 1.94 7.13 -2.38 -0.02 1.92 16 4 C 0.51 13.98 7.03 87.66 0.62 14.59 16 5 O -0.58 -21.76 15.12 -3.04 -0.05 -21.80 16 6 N -0.70 -18.11 5.22 -463.08 -2.42 -20.53 16 7 C 0.13 4.83 5.07 86.38 0.44 5.26 16 8 C 0.15 5.35 3.22 45.34 0.15 5.50 16 9 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 10 C -0.11 -3.06 6.10 31.78 0.19 -2.87 16 11 C -0.13 -4.40 7.09 31.99 0.23 -4.17 16 12 C 0.17 8.24 5.41 86.86 0.47 8.71 16 13 N -0.61 -30.08 3.13 -668.26 -2.09 -32.17 16 14 C -0.24 -13.14 9.76 84.03 0.82 -12.32 16 15 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 16 C -0.06 -3.41 5.47 84.86 0.46 -2.95 16 17 N -0.94 -56.84 10.58 21.65 0.23 -56.61 16 18 Si 0.97 46.46 29.55 68.60 2.03 48.49 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 22 C -0.12 -2.42 4.40 -19.81 -0.09 -2.50 16 23 C -0.04 -0.73 7.93 22.26 0.18 -0.55 16 24 C -0.16 -2.97 10.03 22.32 0.22 -2.75 16 25 C 0.12 2.30 7.30 22.37 0.16 2.47 16 26 F -0.14 -2.72 17.27 44.97 0.78 -1.94 16 27 C -0.19 -3.66 10.01 22.35 0.22 -3.44 16 28 C 0.12 2.55 7.24 22.37 0.16 2.71 16 29 F -0.13 -2.74 16.19 44.97 0.73 -2.01 16 30 H 0.09 0.69 7.56 -2.39 -0.02 0.67 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.78 7.37 -2.39 -0.02 0.76 16 33 H 0.42 7.29 7.75 -92.71 -0.72 6.57 16 34 H 0.04 1.61 8.08 -2.38 -0.02 1.59 16 35 H 0.03 1.27 7.92 -2.39 -0.02 1.25 16 36 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.07 1.86 7.81 -2.39 -0.02 1.84 16 38 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.03 1.84 6.94 -2.39 -0.02 1.82 16 41 H -0.01 -0.47 8.06 -2.39 -0.02 -0.49 16 42 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.15 2.77 7.51 -2.91 -0.02 2.75 16 44 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -73.40 375.30 4.35 -69.06 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.30 Total: 11.94 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 4.84 Total: 5.58 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -4.28 Total: -109.31 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 1.50 Total: -3.96 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -73.40 4.35 -69.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663547954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.543 kcal (2) G-P(sol) polarization free energy of solvation -73.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds