Wall clock time and date at job start Tue Mar 31 2020 21:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47125 * 2 1 4 4 C 1.50706 * 109.47148 * 240.00732 * 2 1 3 5 5 O 1.21280 * 119.99876 * 240.00470 * 4 2 1 6 6 N 1.34780 * 119.99904 * 59.99908 * 4 2 1 7 7 C 1.46493 * 119.99685 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.46932 * 185.13461 * 7 6 4 9 9 H 1.08999 * 109.87452 * 303.57321 * 8 7 6 10 10 C 1.54328 * 109.88349 * 64.58769 * 8 7 6 11 11 C 1.55154 * 102.94241 * 141.60971 * 10 8 7 12 12 C 1.54910 * 101.58403 * 324.50191 * 11 10 8 13 13 N 1.47023 * 109.88455 * 182.39594 * 8 7 6 14 14 C 1.36942 * 125.64945 * 61.61983 * 13 8 7 15 15 H 1.08007 * 119.99657 * 14.75718 * 14 13 8 16 16 C 1.38804 * 120.00225 * 194.76184 * 14 13 8 17 17 N 1.31622 * 120.00275 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00083 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47073 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46863 * 120.00148 * 18 16 14 21 21 H 1.48499 * 109.47378 * 239.99719 * 18 16 14 22 22 C 1.50696 * 109.47261 * 120.00534 * 2 1 3 23 23 C 1.38233 * 119.98594 * 60.00197 * 22 2 1 24 24 C 1.38181 * 120.05054 * 180.02562 * 23 22 2 25 25 C 1.38494 * 120.02456 * 359.97133 * 24 23 22 26 26 F 1.35106 * 120.01299 * 179.97438 * 25 24 23 27 27 C 1.38400 * 119.97667 * 0.02562 * 25 24 23 28 28 C 1.38444 * 119.94724 * 359.77149 * 27 25 24 29 29 F 1.35095 * 120.01323 * 180.22807 * 28 27 25 30 30 H 1.09002 * 109.47696 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47341 * 299.99441 * 1 2 3 32 32 H 1.09001 * 109.47248 * 59.99417 * 1 2 3 33 33 H 0.96999 * 119.99750 * 0.02562 * 6 4 2 34 34 H 1.08997 * 109.47409 * 305.13246 * 7 6 4 35 35 H 1.09000 * 109.47818 * 65.13565 * 7 6 4 36 36 H 1.08995 * 110.71982 * 259.97344 * 10 8 7 37 37 H 1.08997 * 110.71478 * 23.24573 * 10 8 7 38 38 H 1.09006 * 111.00174 * 82.57134 * 11 10 8 39 39 H 1.08999 * 111.00352 * 206.42427 * 11 10 8 40 40 H 1.08999 * 110.37227 * 155.85104 * 12 11 10 41 41 H 1.09003 * 110.36492 * 278.05934 * 12 11 10 42 42 H 0.96994 * 120.00302 * 180.02562 * 17 16 14 43 43 H 1.07997 * 119.97257 * 359.97176 * 23 22 2 44 44 H 1.07998 * 119.99127 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.02440 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7295 -1.6964 -1.1194 6 7 1.7067 -0.2496 -2.4547 7 6 2.1945 -0.9404 -3.6508 8 6 1.7928 -0.1483 -4.8967 9 1 0.7119 -0.0091 -4.9147 10 6 2.4988 1.2240 -4.8964 11 6 2.8538 1.4324 -6.3923 12 6 3.1853 -0.0137 -6.8378 13 7 2.2282 -0.8629 -6.1055 14 6 1.8137 -2.1108 -6.4879 15 1 0.9443 -2.5559 -6.0267 16 6 2.5109 -2.8038 -7.4678 17 7 3.5701 -2.2613 -8.0301 18 14 1.9459 -4.5064 -7.9888 19 1 0.7393 -4.8869 -7.2113 20 1 1.6184 -4.4975 -9.4373 21 1 3.0304 -5.4879 -7.7326 22 6 2.0323 -0.7105 1.2303 23 6 1.6982 -2.0340 1.4487 24 6 2.1577 -2.6866 2.5767 25 6 2.9541 -2.0154 3.4895 26 9 3.4027 -2.6536 4.5926 27 6 3.2892 -0.6903 3.2720 28 6 2.8318 -0.0387 2.1394 29 9 3.1620 1.2533 1.9234 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.1493 0.5392 -2.5435 34 1 3.2806 -1.0212 -3.6063 35 1 1.7577 -1.9379 -3.6981 36 1 1.8232 2.0051 -4.5480 37 1 3.4015 1.1931 -4.2864 38 1 2.0007 1.8256 -6.9453 39 1 3.7214 2.0833 -6.5009 40 1 3.0429 -0.1217 -7.9130 41 1 4.2089 -0.2698 -6.5639 42 1 4.0571 -2.7454 -8.7152 43 1 1.0769 -2.5580 0.7375 44 1 1.8958 -3.7205 2.7465 45 1 3.9099 -0.1661 3.9836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663547955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:16 Heat of formation + Delta-G solvation = -85.042683 kcal Electronic energy + Delta-G solvation = -29133.146946 eV Core-core repulsion = 24786.887828 eV Total energy + Delta-G solvation = -4346.259118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.27552 -49.23464 -40.25022 -38.71357 -37.60404 -34.40048 -34.19435 -32.50038 -31.06672 -29.89245 -29.37288 -28.45408 -25.36123 -24.71775 -23.87985 -23.33878 -22.08238 -20.38886 -19.95912 -19.42754 -18.50562 -17.72490 -17.09447 -16.59316 -16.31557 -16.12217 -15.92053 -15.53010 -15.43866 -15.17172 -14.77091 -14.63517 -14.30534 -14.19840 -13.89270 -13.46840 -13.34087 -13.09399 -12.86538 -12.57183 -12.20660 -12.14156 -11.99981 -11.91428 -11.76615 -11.50090 -11.42313 -11.30800 -10.96480 -10.83026 -10.27232 -10.11361 -9.97250 -9.87185 -9.76215 -9.59833 -9.28970 -8.85765 -8.71413 -8.60657 -6.87031 -5.79879 -3.16765 0.67231 0.78797 2.77667 3.02689 3.36849 3.42991 3.45501 3.47598 3.60608 4.08994 4.20613 4.30649 4.45747 4.57049 4.75142 4.86484 4.92819 5.01442 5.28841 5.34410 5.37213 5.46298 5.49755 5.54579 5.59533 5.60543 5.66417 5.76793 5.78054 5.86531 6.00981 6.03658 6.10333 6.21329 6.42606 6.49353 6.52058 6.58786 6.66562 6.77821 7.02362 7.48470 7.58327 7.72364 7.76328 8.22270 8.41169 9.14192 9.74887 10.42105 11.32173 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014993 B = 0.002636 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.146139 B =10617.686918 C =11711.151189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 H 0.109 0.891 4 C 0.512 3.488 5 O -0.534 6.534 6 N -0.719 5.719 7 C 0.109 3.891 8 C 0.152 3.848 9 H 0.037 0.963 10 C -0.126 4.126 11 C -0.149 4.149 12 C 0.172 3.828 13 N -0.589 5.589 14 C -0.234 4.234 15 H 0.076 0.924 16 C -0.001 4.001 17 N -0.914 5.914 18 Si 0.910 3.090 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.289 1.289 22 C -0.106 4.106 23 C -0.026 4.026 24 C -0.163 4.163 25 C 0.127 3.873 26 F -0.134 7.134 27 C -0.195 4.195 28 C 0.135 3.865 29 F -0.130 7.130 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.396 0.604 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.026 0.974 42 H 0.253 0.747 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.781 7.844 20.296 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.096 4.096 3 H 0.127 0.873 4 C 0.296 3.704 5 O -0.411 6.411 6 N -0.370 5.370 7 C -0.016 4.016 8 C 0.044 3.956 9 H 0.055 0.945 10 C -0.164 4.164 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.313 5.313 14 C -0.362 4.362 15 H 0.094 0.906 16 C -0.199 4.199 17 N -0.560 5.560 18 Si 0.741 3.259 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.216 1.216 22 C -0.107 4.107 23 C -0.045 4.045 24 C -0.181 4.181 25 C 0.107 3.893 26 F -0.112 7.112 27 C -0.214 4.214 28 C 0.116 3.884 29 F -0.108 7.108 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.229 0.771 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.165 6.969 20.183 21.969 hybrid contribution -0.116 -0.456 -0.132 0.489 sum -5.281 6.513 20.052 21.734 Atomic orbital electron populations 1.21802 0.91419 1.03358 1.03177 1.20246 0.98158 1.00698 0.90544 0.87297 1.20263 0.80794 0.84881 0.84426 1.90737 1.37574 1.26162 1.86586 1.46109 1.53123 1.31829 1.05962 1.22258 0.99737 0.96919 0.82669 1.21128 0.96649 0.90929 0.86933 0.94521 1.22607 0.99816 0.96276 0.97737 1.23007 1.00140 1.00294 0.95305 1.21450 0.92179 0.83986 0.97650 1.44490 1.51157 1.16356 1.19281 1.19017 1.07858 0.90880 1.18489 0.90612 1.24924 0.96667 0.98332 0.99930 1.69945 1.19721 1.37258 1.29120 0.86077 0.77818 0.84041 0.78011 1.20364 1.21699 1.21579 1.19437 1.00084 0.95329 0.95886 1.20712 0.96494 0.92280 0.94976 1.21194 1.00400 1.01604 0.94943 1.17296 0.96999 0.90266 0.84691 1.91526 1.87419 1.81571 1.50701 1.20919 1.06134 0.94683 0.99712 1.17056 0.97370 0.79156 0.94839 1.91507 1.90774 1.33977 1.94570 0.91547 0.91215 0.91124 0.77088 0.91594 0.91496 0.92400 0.91845 0.92292 0.92339 0.90990 0.95596 0.93619 0.83956 0.83938 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.90 37.15 0.33 -0.73 16 2 C -0.07 -0.77 2.88 -92.93 -0.27 -1.04 16 3 H 0.11 1.01 7.13 -51.93 -0.37 0.64 16 4 C 0.51 7.34 7.02 -10.98 -0.08 7.26 16 5 O -0.53 -9.94 15.10 5.56 0.08 -9.86 16 6 N -0.72 -9.96 5.22 -60.30 -0.31 -10.27 16 7 C 0.11 2.02 5.07 -4.04 -0.02 2.00 16 8 C 0.15 2.89 3.22 -66.95 -0.22 2.67 16 9 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 10 C -0.13 -2.03 6.10 -24.90 -0.15 -2.18 16 11 C -0.15 -2.66 7.08 -24.58 -0.17 -2.84 16 12 C 0.17 4.04 5.41 -2.53 -0.01 4.03 16 13 N -0.59 -14.29 3.13 -162.57 -0.51 -14.80 16 14 C -0.23 -6.30 9.76 -15.06 -0.15 -6.44 16 15 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 16 C 0.00 -0.03 5.47 -17.43 -0.10 -0.13 16 17 N -0.91 -26.39 10.58 55.49 0.59 -25.80 16 18 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C -0.11 -1.18 4.40 -104.55 -0.46 -1.64 16 23 C -0.03 -0.28 7.92 -39.60 -0.31 -0.60 16 24 C -0.16 -1.61 10.02 -39.51 -0.40 -2.00 16 25 C 0.13 1.31 7.30 -39.43 -0.29 1.02 16 26 F -0.13 -1.41 17.27 2.25 0.04 -1.37 16 27 C -0.19 -1.96 10.01 -39.45 -0.39 -2.36 16 28 C 0.14 1.49 7.24 -39.43 -0.29 1.20 16 29 F -0.13 -1.44 16.19 2.25 0.04 -1.40 16 30 H 0.07 0.52 7.39 -51.93 -0.38 0.14 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.46 7.56 -51.93 -0.39 0.07 16 33 H 0.40 4.22 7.75 -40.82 -0.32 3.90 16 34 H 0.07 1.40 8.08 -51.93 -0.42 0.98 16 35 H 0.07 1.40 7.92 -51.93 -0.41 0.99 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.03 7.81 -51.93 -0.41 0.62 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.88 6.94 -51.93 -0.36 1.52 16 41 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.14 1.45 7.51 -52.49 -0.39 1.06 16 44 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 45 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -31.62 375.29 -8.79 -40.41 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.38 Total: 2.41 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.97 Total: -1.79 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.24 Total: -50.88 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.62 -8.79 -40.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663547955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.628 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds