Wall clock time and date at job start Tue Mar 31 2020 21:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47125 * 2 1 4 4 C 1.50706 * 109.47148 * 240.00732 * 2 1 3 5 5 O 1.21280 * 119.99876 * 240.00470 * 4 2 1 6 6 N 1.34780 * 119.99904 * 59.99908 * 4 2 1 7 7 C 1.46493 * 119.99685 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.46932 * 185.13461 * 7 6 4 9 9 H 1.08999 * 109.87452 * 303.57321 * 8 7 6 10 10 C 1.54328 * 109.88349 * 64.58769 * 8 7 6 11 11 C 1.55154 * 102.94241 * 141.60971 * 10 8 7 12 12 C 1.54910 * 101.58403 * 324.50191 * 11 10 8 13 13 N 1.47023 * 109.88455 * 182.39594 * 8 7 6 14 14 C 1.36942 * 125.64945 * 61.61983 * 13 8 7 15 15 H 1.08007 * 119.99657 * 14.75718 * 14 13 8 16 16 C 1.38804 * 120.00225 * 194.76184 * 14 13 8 17 17 N 1.31622 * 120.00275 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00083 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47073 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46863 * 120.00148 * 18 16 14 21 21 H 1.48499 * 109.47378 * 239.99719 * 18 16 14 22 22 C 1.50696 * 109.47261 * 120.00534 * 2 1 3 23 23 C 1.38233 * 119.98594 * 60.00197 * 22 2 1 24 24 C 1.38181 * 120.05054 * 180.02562 * 23 22 2 25 25 C 1.38494 * 120.02456 * 359.97133 * 24 23 22 26 26 F 1.35106 * 120.01299 * 179.97438 * 25 24 23 27 27 C 1.38400 * 119.97667 * 0.02562 * 25 24 23 28 28 C 1.38444 * 119.94724 * 359.77149 * 27 25 24 29 29 F 1.35095 * 120.01323 * 180.22807 * 28 27 25 30 30 H 1.09002 * 109.47696 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47341 * 299.99441 * 1 2 3 32 32 H 1.09001 * 109.47248 * 59.99417 * 1 2 3 33 33 H 0.96999 * 119.99750 * 0.02562 * 6 4 2 34 34 H 1.08997 * 109.47409 * 305.13246 * 7 6 4 35 35 H 1.09000 * 109.47818 * 65.13565 * 7 6 4 36 36 H 1.08995 * 110.71982 * 259.97344 * 10 8 7 37 37 H 1.08997 * 110.71478 * 23.24573 * 10 8 7 38 38 H 1.09006 * 111.00174 * 82.57134 * 11 10 8 39 39 H 1.08999 * 111.00352 * 206.42427 * 11 10 8 40 40 H 1.08999 * 110.37227 * 155.85104 * 12 11 10 41 41 H 1.09003 * 110.36492 * 278.05934 * 12 11 10 42 42 H 0.96994 * 120.00302 * 180.02562 * 17 16 14 43 43 H 1.07997 * 119.97257 * 359.97176 * 23 22 2 44 44 H 1.07998 * 119.99127 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.02440 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7295 -1.6964 -1.1194 6 7 1.7067 -0.2496 -2.4547 7 6 2.1945 -0.9404 -3.6508 8 6 1.7928 -0.1483 -4.8967 9 1 0.7119 -0.0091 -4.9147 10 6 2.4988 1.2240 -4.8964 11 6 2.8538 1.4324 -6.3923 12 6 3.1853 -0.0137 -6.8378 13 7 2.2282 -0.8629 -6.1055 14 6 1.8137 -2.1108 -6.4879 15 1 0.9443 -2.5559 -6.0267 16 6 2.5109 -2.8038 -7.4678 17 7 3.5701 -2.2613 -8.0301 18 14 1.9459 -4.5064 -7.9888 19 1 0.7393 -4.8869 -7.2113 20 1 1.6184 -4.4975 -9.4373 21 1 3.0304 -5.4879 -7.7326 22 6 2.0323 -0.7105 1.2303 23 6 1.6982 -2.0340 1.4487 24 6 2.1577 -2.6866 2.5767 25 6 2.9541 -2.0154 3.4895 26 9 3.4027 -2.6536 4.5926 27 6 3.2892 -0.6903 3.2720 28 6 2.8318 -0.0387 2.1394 29 9 3.1620 1.2533 1.9234 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.1493 0.5392 -2.5435 34 1 3.2806 -1.0212 -3.6063 35 1 1.7577 -1.9379 -3.6981 36 1 1.8232 2.0051 -4.5480 37 1 3.4015 1.1931 -4.2864 38 1 2.0007 1.8256 -6.9453 39 1 3.7214 2.0833 -6.5009 40 1 3.0429 -0.1217 -7.9130 41 1 4.2089 -0.2698 -6.5639 42 1 4.0571 -2.7454 -8.7152 43 1 1.0769 -2.5580 0.7375 44 1 1.8958 -3.7205 2.7465 45 1 3.9099 -0.1661 3.9836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663547955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:15 Heat of formation + Delta-G solvation = -103.506637 kcal Electronic energy + Delta-G solvation = -29133.947603 eV Core-core repulsion = 24786.887828 eV Total energy + Delta-G solvation = -4347.059775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.09971 -50.04452 -41.31751 -39.79613 -39.08725 -35.75720 -35.16128 -34.36677 -31.85940 -31.45331 -30.67719 -29.70220 -26.80150 -26.12243 -25.20252 -24.18152 -23.07498 -22.01479 -21.28712 -20.86292 -19.32087 -18.90629 -18.44202 -17.83423 -17.46653 -17.00397 -16.87605 -16.75399 -16.40018 -16.34427 -16.28548 -15.68453 -15.62504 -15.49183 -15.06835 -14.70944 -14.63382 -13.97634 -13.83444 -13.78546 -13.65463 -13.41676 -13.32773 -12.99036 -12.97651 -12.85268 -12.76953 -12.68186 -12.27263 -12.15262 -11.97890 -11.86038 -11.70872 -11.48309 -11.39200 -10.83443 -10.68889 -10.08951 -10.03785 -9.68025 -8.85549 -7.88747 -5.26252 -0.14354 -0.00500 1.43883 1.45890 1.55107 1.63754 2.06579 2.41126 2.51980 2.80259 3.27179 3.31571 3.40870 3.51497 3.69672 3.81738 3.91868 3.99771 4.00323 4.10083 4.14857 4.27779 4.28237 4.47793 4.54837 4.67619 4.74628 4.77183 4.85863 4.86370 4.92240 4.98136 5.00804 5.03594 5.15808 5.20558 5.23033 5.29239 5.39526 5.47743 5.59610 5.66382 5.71310 5.78130 6.23067 6.60593 7.08842 7.29071 7.76490 8.42349 9.22518 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014993 B = 0.002636 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.146139 B =10617.686918 C =11711.151189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 H 0.126 0.874 4 C 0.511 3.489 5 O -0.581 6.581 6 N -0.704 5.704 7 C 0.131 3.869 8 C 0.148 3.852 9 H 0.056 0.944 10 C -0.113 4.113 11 C -0.134 4.134 12 C 0.173 3.827 13 N -0.611 5.611 14 C -0.236 4.236 15 H 0.079 0.921 16 C -0.062 4.062 17 N -0.947 5.947 18 Si 0.971 3.029 19 H -0.265 1.265 20 H -0.290 1.290 21 H -0.297 1.297 22 C -0.117 4.117 23 C -0.037 4.037 24 C -0.162 4.162 25 C 0.118 3.882 26 F -0.136 7.136 27 C -0.193 4.193 28 C 0.125 3.875 29 F -0.131 7.131 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.416 0.584 34 H 0.031 0.969 35 H 0.035 0.965 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.035 0.965 41 H -0.011 1.011 42 H 0.247 0.753 43 H 0.143 0.857 44 H 0.160 0.840 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 9.688 22.079 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 H 0.144 0.856 4 C 0.298 3.702 5 O -0.461 6.461 6 N -0.356 5.356 7 C 0.004 3.996 8 C 0.041 3.959 9 H 0.073 0.927 10 C -0.151 4.151 11 C -0.172 4.172 12 C 0.048 3.952 13 N -0.336 5.336 14 C -0.366 4.366 15 H 0.097 0.903 16 C -0.255 4.255 17 N -0.595 5.595 18 Si 0.799 3.201 19 H -0.189 1.189 20 H -0.217 1.217 21 H -0.224 1.224 22 C -0.118 4.118 23 C -0.055 4.055 24 C -0.180 4.180 25 C 0.099 3.901 26 F -0.114 7.114 27 C -0.213 4.213 28 C 0.106 3.894 29 F -0.109 7.109 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.254 0.746 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.126 0.874 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.007 0.993 42 H 0.056 0.944 43 H 0.161 0.839 44 H 0.177 0.823 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.082 8.866 22.006 24.760 hybrid contribution 0.464 -1.030 -0.610 1.284 sum -6.617 7.837 21.396 23.728 Atomic orbital electron populations 1.21855 0.88968 1.03713 1.04973 1.20241 0.99992 1.00520 0.87694 0.85609 1.21014 0.79627 0.84245 0.85353 1.90723 1.39644 1.28434 1.87278 1.45800 1.53128 1.32124 1.04552 1.21649 0.97349 0.95934 0.84660 1.21353 0.97777 0.91940 0.84847 0.92652 1.22604 1.00554 0.95487 0.96424 1.22872 1.01584 0.96327 0.96462 1.21253 0.90428 0.87847 0.95655 1.44759 1.51004 1.16068 1.21726 1.19346 1.07599 0.91965 1.17644 0.90322 1.25695 0.97286 1.01780 1.00773 1.70150 1.21101 1.38344 1.29887 0.85123 0.77481 0.79891 0.77563 1.18885 1.21653 1.22400 1.19611 1.00310 0.95650 0.96252 1.20809 0.96931 0.92426 0.95316 1.21406 0.99753 1.02412 0.94452 1.17400 0.97352 0.90535 0.84813 1.91521 1.87487 1.81630 1.50804 1.21112 1.05785 0.94643 0.99731 1.17129 0.97736 0.79269 0.95289 1.91500 1.90840 1.33986 1.94619 0.91977 0.89296 0.89471 0.74633 0.95021 0.94633 0.87445 0.91947 0.90972 0.90129 0.94681 0.99292 0.94399 0.83904 0.82280 0.81824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.90 71.98 0.64 -1.00 16 2 C -0.06 -1.16 2.88 -12.29 -0.04 -1.19 16 3 H 0.13 1.91 7.13 -2.39 -0.02 1.89 16 4 C 0.51 13.98 7.02 87.66 0.62 14.59 16 5 O -0.58 -21.77 15.10 -3.03 -0.05 -21.81 16 6 N -0.70 -18.11 5.22 -463.07 -2.42 -20.53 16 7 C 0.13 4.82 5.07 86.38 0.44 5.25 16 8 C 0.15 5.39 3.22 45.34 0.15 5.54 16 9 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 10 C -0.11 -3.26 6.10 31.78 0.19 -3.07 16 11 C -0.13 -4.51 7.08 31.99 0.23 -4.28 16 12 C 0.17 8.34 5.41 86.86 0.47 8.81 16 13 N -0.61 -30.05 3.13 -668.25 -2.09 -32.14 16 14 C -0.24 -12.96 9.76 84.03 0.82 -12.14 16 15 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 16 C -0.06 -3.51 5.47 84.86 0.46 -3.05 16 17 N -0.95 -57.10 10.58 21.65 0.23 -56.87 16 18 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 19 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 22 C -0.12 -2.42 4.40 -19.82 -0.09 -2.51 16 23 C -0.04 -0.75 7.92 22.26 0.18 -0.57 16 24 C -0.16 -3.02 10.02 22.32 0.22 -2.80 16 25 C 0.12 2.31 7.30 22.37 0.16 2.47 16 26 F -0.14 -2.71 17.27 44.97 0.78 -1.94 16 27 C -0.19 -3.61 10.01 22.36 0.22 -3.38 16 28 C 0.13 2.55 7.24 22.37 0.16 2.71 16 29 F -0.13 -2.64 16.19 44.97 0.73 -1.91 16 30 H 0.06 0.82 7.39 -2.39 -0.02 0.80 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.76 7.56 -2.39 -0.02 0.74 16 33 H 0.42 7.28 7.75 -92.71 -0.72 6.57 16 34 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 35 H 0.04 1.52 7.92 -2.39 -0.02 1.50 16 36 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.06 1.85 7.81 -2.39 -0.02 1.83 16 38 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.03 1.91 6.94 -2.39 -0.02 1.89 16 41 H -0.01 -0.60 8.06 -2.39 -0.02 -0.62 16 42 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 43 H 0.14 2.84 7.51 -2.91 -0.02 2.82 16 44 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 45 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -73.00 375.29 4.35 -68.66 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.30 Total: 13.07 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 4.84 Total: 5.39 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -4.28 Total: -109.53 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 1.50 Total: -3.85 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -73.00 4.35 -68.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663547955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.850 kcal (2) G-P(sol) polarization free energy of solvation -73.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds