Wall clock time and date at job start Tue Mar 31 2020 21:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47102 * 2 1 4 4 C 1.50703 * 109.46968 * 119.99407 * 2 1 3 5 5 O 1.21281 * 119.99263 * 120.00075 * 4 2 1 6 6 N 1.34769 * 120.00262 * 299.99787 * 4 2 1 7 7 C 1.46502 * 119.99707 * 179.97438 * 6 4 2 8 8 C 1.53001 * 110.91398 * 56.10758 * 7 6 4 9 9 C 1.55162 * 111.00347 * 180.02562 * 7 6 4 10 10 C 1.54322 * 102.94027 * 82.57549 * 9 7 6 11 11 N 1.47021 * 107.27114 * 22.19464 * 10 9 7 12 12 C 1.36939 * 125.65020 * 180.79294 * 11 10 9 13 13 H 1.07993 * 120.00037 * 174.02304 * 12 11 10 14 14 C 1.38818 * 119.99487 * 354.02227 * 12 11 10 15 15 N 1.31614 * 120.00293 * 6.87900 * 14 12 11 16 16 Si 1.86798 * 119.99584 * 186.87919 * 14 12 11 17 17 H 1.48507 * 109.47032 * 94.98523 * 16 14 12 18 18 H 1.48499 * 109.47306 * 214.98527 * 16 14 12 19 19 H 1.48502 * 109.47533 * 334.99048 * 16 14 12 20 20 C 1.47428 * 108.70438 * 1.05667 * 11 10 9 21 21 C 1.50696 * 109.47271 * 239.99971 * 2 1 3 22 22 C 1.38425 * 120.02101 * 299.72136 * 21 2 1 23 23 F 1.35099 * 120.01408 * 0.02562 * 22 21 2 24 24 C 1.38473 * 119.97054 * 179.78997 * 22 21 2 25 25 C 1.38200 * 120.02980 * 0.48645 * 24 22 21 26 26 C 1.38212 * 120.04678 * 359.74722 * 25 24 22 27 27 C 1.38411 * 120.02806 * 119.99866 * 21 2 1 28 28 F 1.35098 * 120.01375 * 359.97438 * 27 21 2 29 29 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46918 * 299.99965 * 1 2 3 31 31 H 1.09001 * 109.46955 * 60.00012 * 1 2 3 32 32 H 0.96996 * 120.00216 * 0.02562 * 6 4 2 33 33 H 1.09003 * 109.47305 * 183.89913 * 8 7 6 34 34 H 1.09006 * 109.46975 * 303.89784 * 8 7 6 35 35 H 1.08997 * 109.47874 * 63.89583 * 8 7 6 36 36 H 1.09000 * 110.71739 * 324.21406 * 9 7 6 37 37 H 1.09001 * 110.72194 * 200.93961 * 9 7 6 38 38 H 1.09001 * 109.88364 * 262.77461 * 10 9 7 39 39 H 1.09004 * 109.87812 * 141.60984 * 10 9 7 40 40 H 0.96993 * 119.99943 * 179.97438 * 15 14 12 41 41 H 1.09005 * 110.36351 * 94.71150 * 20 11 10 42 42 H 1.08991 * 110.36864 * 217.03292 * 20 11 10 43 43 H 1.08004 * 119.98597 * 180.23574 * 24 22 21 44 44 H 1.08003 * 119.98312 * 179.72506 * 25 24 22 45 45 H 1.08002 * 119.98518 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7296 -1.6964 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 2.1947 -0.9407 3.6508 8 6 3.7211 -1.0452 3.6367 9 6 1.6969 -0.2374 4.9412 10 6 0.2749 -0.8097 5.1201 11 7 0.2219 -2.0837 4.3881 12 6 -0.8727 -2.9001 4.2854 13 1 -0.8401 -3.7688 3.6446 14 6 -2.0240 -2.6111 5.0050 15 7 -2.1136 -1.4840 5.6786 16 14 -3.4463 -3.8221 5.0173 17 1 -3.3428 -4.6951 6.2142 18 1 -4.7303 -3.0772 5.0575 19 1 -3.3964 -4.6568 3.7901 20 6 1.5440 -2.3397 3.7882 21 6 2.0324 -0.7104 -1.2304 22 6 1.7030 -2.0373 -1.4470 23 9 0.9306 -2.6961 -0.5556 24 6 2.1616 -2.6878 -2.5801 25 6 2.9561 -2.0158 -3.4896 26 6 3.2895 -0.6923 -3.2719 27 6 2.8281 -0.0383 -2.1419 28 9 3.1546 1.2553 -1.9292 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1489 0.5387 2.5436 33 1 4.0537 -1.6221 4.4997 34 1 4.0428 -1.5422 2.7215 35 1 4.1542 -0.0459 3.6789 36 1 1.6631 0.8433 4.8028 37 1 2.3276 -0.4990 5.7908 38 1 -0.4584 -0.1155 4.7097 39 1 0.0748 -0.9813 6.1777 40 1 -2.9182 -1.2819 6.1811 41 1 2.1416 -2.9733 4.4437 42 1 1.4326 -2.8042 2.8086 43 1 1.9016 -3.7220 -2.7513 44 1 3.3170 -2.5252 -4.3709 45 1 3.9108 -0.1682 -3.9831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671660371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:47 Heat of formation + Delta-G solvation = -72.597673 kcal Electronic energy + Delta-G solvation = -30937.700970 eV Core-core repulsion = 26591.981509 eV Total energy + Delta-G solvation = -4345.719462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.17191 -48.84913 -40.12409 -38.85065 -37.29566 -34.30756 -33.89170 -31.80917 -30.40038 -30.14299 -29.24885 -28.62304 -25.64714 -24.87179 -23.68640 -22.96930 -22.56360 -20.48052 -19.95904 -18.95647 -18.19307 -17.71017 -17.03721 -16.46816 -16.08330 -15.81843 -15.59432 -15.41131 -15.23028 -14.73954 -14.61295 -14.45616 -14.24484 -13.80675 -13.57349 -13.25550 -12.84853 -12.82693 -12.59180 -12.36380 -12.16878 -12.03835 -11.90137 -11.86604 -11.76021 -11.62260 -11.47799 -10.97570 -10.87218 -10.84387 -10.33811 -10.31961 -10.04562 -9.97236 -9.62527 -9.25498 -8.93211 -8.81438 -8.60811 -8.47998 -6.75868 -5.69144 -2.99545 0.82529 0.90028 2.96590 3.17441 3.42521 3.48455 3.49948 3.58317 3.81056 4.23716 4.32855 4.51234 4.54064 4.63726 4.94184 4.98501 5.11952 5.17723 5.21472 5.43125 5.49234 5.59529 5.65533 5.68153 5.72716 5.76819 5.80351 5.86799 5.95699 5.99932 6.06353 6.16965 6.20061 6.25944 6.40743 6.43526 6.57943 6.65120 6.73191 6.85419 7.17693 7.54579 7.62097 7.83248 7.93631 8.29186 8.60423 9.26619 9.86907 10.53674 11.43411 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.003846 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.494322 B = 7278.330359 C = 8231.858907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 H 0.108 0.892 4 C 0.525 3.475 5 O -0.533 6.533 6 N -0.697 5.697 7 C 0.157 3.843 8 C -0.153 4.153 9 C -0.147 4.147 10 C 0.177 3.823 11 N -0.602 5.602 12 C -0.220 4.220 13 H 0.076 0.924 14 C -0.008 4.008 15 N -0.923 5.923 16 Si 0.907 3.093 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.281 1.281 20 C 0.134 3.866 21 C -0.136 4.136 22 C 0.168 3.832 23 F -0.114 7.114 24 C -0.170 4.170 25 C -0.063 4.063 26 C -0.172 4.172 27 C 0.133 3.867 28 F -0.132 7.132 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.398 0.602 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.251 0.749 41 H 0.024 0.976 42 H 0.050 0.950 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.840 5.681 -16.311 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.094 4.094 3 H 0.126 0.874 4 C 0.310 3.690 5 O -0.410 6.410 6 N -0.347 5.347 7 C 0.071 3.929 8 C -0.211 4.211 9 C -0.185 4.185 10 C 0.053 3.947 11 N -0.328 5.328 12 C -0.349 4.349 13 H 0.094 0.906 14 C -0.204 4.204 15 N -0.571 5.571 16 Si 0.738 3.262 17 H -0.217 1.217 18 H -0.219 1.219 19 H -0.207 1.207 20 C 0.007 3.993 21 C -0.138 4.138 22 C 0.148 3.852 23 F -0.092 7.092 24 C -0.189 4.189 25 C -0.082 4.082 26 C -0.191 4.191 27 C 0.113 3.887 28 F -0.111 7.111 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.232 0.768 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.042 0.958 42 H 0.069 0.931 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.090 4.981 -16.233 20.281 hybrid contribution -1.189 -0.050 0.402 1.256 sum 9.901 4.932 -15.831 19.313 Atomic orbital electron populations 1.21850 0.91050 1.04418 1.03051 1.20185 0.98572 1.00355 0.90259 0.87392 1.20039 0.80301 0.84498 0.84187 1.90638 1.38089 1.25735 1.86526 1.45718 1.52693 1.31458 1.04835 1.21484 0.92935 0.94553 0.83938 1.22034 0.94218 1.01360 1.03490 1.23227 1.00688 0.99086 0.95546 1.21154 0.89246 0.87216 0.97124 1.44432 1.06530 1.21923 1.59952 1.19059 0.90116 1.04243 1.21452 0.90636 1.24762 0.98156 0.97638 0.99823 1.69956 1.27842 1.22739 1.36540 0.86159 0.81891 0.80466 0.77694 1.21700 1.21857 1.20683 1.21855 0.87484 0.92793 0.97128 1.19399 1.02442 0.94177 0.97777 1.17138 0.91543 0.89024 0.87486 1.91593 1.71311 1.80017 1.66298 1.21222 1.01585 1.01708 0.94384 1.20794 0.95526 0.93201 0.98634 1.21083 1.04174 0.96058 0.97776 1.17139 0.97335 0.78994 0.95229 1.91495 1.90791 1.33997 1.94775 0.90755 0.90777 0.91606 0.76778 0.91981 0.90362 0.93323 0.91805 0.90899 0.94070 0.93565 0.93914 0.95832 0.93135 0.84078 0.84134 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.88 37.16 0.33 -1.62 16 2 C -0.07 -1.00 2.79 -92.92 -0.26 -1.25 16 3 H 0.11 1.28 7.13 -51.93 -0.37 0.91 16 4 C 0.52 8.84 5.97 -10.99 -0.07 8.77 16 5 O -0.53 -10.38 11.36 5.56 0.06 -10.32 16 6 N -0.70 -11.58 5.07 -45.62 -0.23 -11.81 16 7 C 0.16 2.84 0.83 -129.67 -0.11 2.74 16 8 C -0.15 -2.44 8.59 37.16 0.32 -2.12 16 9 C -0.15 -2.64 5.97 -24.89 -0.15 -2.79 16 10 C 0.18 4.19 5.37 -3.07 -0.02 4.18 16 11 N -0.60 -15.50 3.39 -170.07 -0.58 -16.08 16 12 C -0.22 -6.26 10.26 -15.06 -0.15 -6.42 16 13 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 14 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 15 N -0.92 -26.92 10.36 55.49 0.58 -26.34 16 16 Si 0.91 22.47 29.56 -169.99 -5.02 17.44 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 C 0.13 3.00 6.16 -2.53 -0.02 2.99 16 21 C -0.14 -1.85 4.41 -104.49 -0.46 -2.31 16 22 C 0.17 2.38 6.13 -39.43 -0.24 2.14 16 23 F -0.11 -1.96 13.80 2.25 0.03 -1.93 16 24 C -0.17 -1.86 10.02 -39.51 -0.40 -2.26 16 25 C -0.06 -0.55 10.04 -39.60 -0.40 -0.95 16 26 C -0.17 -1.61 10.03 -39.50 -0.40 -2.01 16 27 C 0.13 1.57 7.25 -39.43 -0.29 1.28 16 28 F -0.13 -1.56 16.19 2.25 0.04 -1.53 16 29 H 0.07 1.16 6.33 -51.93 -0.33 0.83 16 30 H 0.07 0.97 7.56 -51.93 -0.39 0.58 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.40 5.92 7.93 -40.82 -0.32 5.60 16 33 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.08 1.37 5.92 -51.93 -0.31 1.06 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 37 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 38 H 0.04 1.05 7.55 -51.93 -0.39 0.66 16 39 H 0.05 1.22 7.36 -51.93 -0.38 0.84 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.02 0.54 7.98 -51.93 -0.41 0.12 16 42 H 0.05 1.23 6.86 -51.93 -0.36 0.87 16 43 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 44 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 45 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -32.70 364.67 -8.21 -40.91 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.18 Total: 4.11 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.39 Total: 0.06 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.23 Total: -54.24 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.06 Total: -10.32 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.07 Total: -3.46 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.70 -8.21 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671660371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.690 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds