Wall clock time and date at job start Tue Mar 31 2020 21:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47102 * 2 1 4 4 C 1.50703 * 109.46968 * 119.99407 * 2 1 3 5 5 O 1.21281 * 119.99263 * 120.00075 * 4 2 1 6 6 N 1.34769 * 120.00262 * 299.99787 * 4 2 1 7 7 C 1.46502 * 119.99707 * 179.97438 * 6 4 2 8 8 C 1.53001 * 110.91398 * 56.10758 * 7 6 4 9 9 C 1.55162 * 111.00347 * 180.02562 * 7 6 4 10 10 C 1.54322 * 102.94027 * 82.57549 * 9 7 6 11 11 N 1.47021 * 107.27114 * 22.19464 * 10 9 7 12 12 C 1.36939 * 125.65020 * 180.79294 * 11 10 9 13 13 H 1.07993 * 120.00037 * 174.02304 * 12 11 10 14 14 C 1.38818 * 119.99487 * 354.02227 * 12 11 10 15 15 N 1.31614 * 120.00293 * 6.87900 * 14 12 11 16 16 Si 1.86798 * 119.99584 * 186.87919 * 14 12 11 17 17 H 1.48507 * 109.47032 * 94.98523 * 16 14 12 18 18 H 1.48499 * 109.47306 * 214.98527 * 16 14 12 19 19 H 1.48502 * 109.47533 * 334.99048 * 16 14 12 20 20 C 1.47428 * 108.70438 * 1.05667 * 11 10 9 21 21 C 1.50696 * 109.47271 * 239.99971 * 2 1 3 22 22 C 1.38425 * 120.02101 * 299.72136 * 21 2 1 23 23 F 1.35099 * 120.01408 * 0.02562 * 22 21 2 24 24 C 1.38473 * 119.97054 * 179.78997 * 22 21 2 25 25 C 1.38200 * 120.02980 * 0.48645 * 24 22 21 26 26 C 1.38212 * 120.04678 * 359.74722 * 25 24 22 27 27 C 1.38411 * 120.02806 * 119.99866 * 21 2 1 28 28 F 1.35098 * 120.01375 * 359.97438 * 27 21 2 29 29 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46918 * 299.99965 * 1 2 3 31 31 H 1.09001 * 109.46955 * 60.00012 * 1 2 3 32 32 H 0.96996 * 120.00216 * 0.02562 * 6 4 2 33 33 H 1.09003 * 109.47305 * 183.89913 * 8 7 6 34 34 H 1.09006 * 109.46975 * 303.89784 * 8 7 6 35 35 H 1.08997 * 109.47874 * 63.89583 * 8 7 6 36 36 H 1.09000 * 110.71739 * 324.21406 * 9 7 6 37 37 H 1.09001 * 110.72194 * 200.93961 * 9 7 6 38 38 H 1.09001 * 109.88364 * 262.77461 * 10 9 7 39 39 H 1.09004 * 109.87812 * 141.60984 * 10 9 7 40 40 H 0.96993 * 119.99943 * 179.97438 * 15 14 12 41 41 H 1.09005 * 110.36351 * 94.71150 * 20 11 10 42 42 H 1.08991 * 110.36864 * 217.03292 * 20 11 10 43 43 H 1.08004 * 119.98597 * 180.23574 * 24 22 21 44 44 H 1.08003 * 119.98312 * 179.72506 * 25 24 22 45 45 H 1.08002 * 119.98518 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7296 -1.6964 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 2.1947 -0.9407 3.6508 8 6 3.7211 -1.0452 3.6367 9 6 1.6969 -0.2374 4.9412 10 6 0.2749 -0.8097 5.1201 11 7 0.2219 -2.0837 4.3881 12 6 -0.8727 -2.9001 4.2854 13 1 -0.8401 -3.7688 3.6446 14 6 -2.0240 -2.6111 5.0050 15 7 -2.1136 -1.4840 5.6786 16 14 -3.4463 -3.8221 5.0173 17 1 -3.3428 -4.6951 6.2142 18 1 -4.7303 -3.0772 5.0575 19 1 -3.3964 -4.6568 3.7901 20 6 1.5440 -2.3397 3.7882 21 6 2.0324 -0.7104 -1.2304 22 6 1.7030 -2.0373 -1.4470 23 9 0.9306 -2.6961 -0.5556 24 6 2.1616 -2.6878 -2.5801 25 6 2.9561 -2.0158 -3.4896 26 6 3.2895 -0.6923 -3.2719 27 6 2.8281 -0.0383 -2.1419 28 9 3.1546 1.2553 -1.9292 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1489 0.5387 2.5436 33 1 4.0537 -1.6221 4.4997 34 1 4.0428 -1.5422 2.7215 35 1 4.1542 -0.0459 3.6789 36 1 1.6631 0.8433 4.8028 37 1 2.3276 -0.4990 5.7908 38 1 -0.4584 -0.1155 4.7097 39 1 0.0748 -0.9813 6.1777 40 1 -2.9182 -1.2819 6.1811 41 1 2.1416 -2.9733 4.4437 42 1 1.4326 -2.8042 2.8086 43 1 1.9016 -3.7220 -2.7513 44 1 3.3170 -2.5252 -4.3709 45 1 3.9108 -0.1682 -3.9831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671660371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:46 Heat of formation + Delta-G solvation = -92.488176 kcal Electronic energy + Delta-G solvation = -30938.563487 eV Core-core repulsion = 26591.981509 eV Total energy + Delta-G solvation = -4346.581978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.04304 -49.97552 -41.45699 -39.88210 -38.79710 -35.66937 -35.42215 -33.55172 -31.74609 -31.23051 -30.48891 -30.17057 -27.53620 -26.02397 -25.37895 -23.87733 -23.65559 -22.20420 -21.37473 -20.41460 -19.15648 -19.00121 -18.63789 -17.73369 -17.24096 -16.85445 -16.81826 -16.56130 -16.54884 -16.29927 -16.06438 -15.61903 -15.53125 -15.35455 -14.94935 -14.70117 -14.28644 -13.93368 -13.75682 -13.71974 -13.50551 -13.42566 -13.30658 -13.09834 -12.98751 -12.88972 -12.84101 -12.75644 -12.49443 -12.16477 -12.05364 -11.98806 -11.90776 -11.70221 -11.56016 -10.71283 -10.56528 -9.99342 -9.86855 -9.69441 -8.86485 -7.88320 -5.20641 -0.02140 0.03714 1.41975 1.43451 1.52373 1.65361 2.16251 2.46841 2.48836 2.93515 3.26756 3.29868 3.44238 3.52922 3.64265 3.70178 3.87812 3.92635 4.03383 4.07521 4.17546 4.21303 4.25785 4.61211 4.62456 4.68011 4.70464 4.79356 4.84386 4.84904 4.90333 4.92431 5.00820 5.03512 5.07103 5.08351 5.17790 5.22422 5.35168 5.41634 5.63444 5.69518 5.76185 5.81579 6.18604 6.61953 7.10512 7.29564 7.75912 8.41043 9.22027 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.003846 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.494322 B = 7278.330359 C = 8231.858907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 H 0.130 0.870 4 C 0.519 3.481 5 O -0.561 6.561 6 N -0.697 5.697 7 C 0.168 3.832 8 C -0.142 4.142 9 C -0.128 4.128 10 C 0.186 3.814 11 N -0.619 5.619 12 C -0.242 4.242 13 H 0.064 0.936 14 C -0.054 4.054 15 N -0.942 5.942 16 Si 0.970 3.030 17 H -0.286 1.286 18 H -0.289 1.289 19 H -0.276 1.276 20 C 0.133 3.867 21 C -0.155 4.155 22 C 0.128 3.872 23 F -0.145 7.145 24 C -0.173 4.173 25 C -0.049 4.049 26 C -0.159 4.159 27 C 0.121 3.879 28 F -0.133 7.133 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.407 0.593 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.015 0.985 39 H 0.012 0.988 40 H 0.248 0.752 41 H 0.021 0.979 42 H 0.023 0.977 43 H 0.154 0.846 44 H 0.184 0.816 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.429 6.764 -18.234 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 H 0.147 0.853 4 C 0.306 3.694 5 O -0.440 6.440 6 N -0.348 5.348 7 C 0.081 3.919 8 C -0.201 4.201 9 C -0.167 4.167 10 C 0.061 3.939 11 N -0.345 5.345 12 C -0.371 4.371 13 H 0.082 0.918 14 C -0.248 4.248 15 N -0.591 5.591 16 Si 0.798 3.202 17 H -0.213 1.213 18 H -0.215 1.215 19 H -0.201 1.201 20 C 0.007 3.993 21 C -0.157 4.157 22 C 0.109 3.891 23 F -0.123 7.123 24 C -0.191 4.191 25 C -0.066 4.066 26 C -0.178 4.178 27 C 0.102 3.898 28 F -0.112 7.112 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.242 0.758 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.058 0.942 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.172 0.828 44 H 0.201 0.799 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 12.694 6.081 -18.167 22.982 hybrid contribution -1.657 -0.442 0.911 1.942 sum 11.037 5.639 -17.256 21.246 Atomic orbital electron populations 1.21790 0.91123 1.02726 1.04108 1.20155 0.98394 1.01032 0.89100 0.85272 1.20618 0.79641 0.84187 0.84949 1.90617 1.39385 1.26964 1.87006 1.45723 1.52870 1.31591 1.04581 1.21341 0.94176 0.91754 0.84670 1.21944 0.92046 1.02964 1.03100 1.23101 0.96817 1.00731 0.96017 1.20946 0.92404 0.86075 0.94478 1.44659 1.07048 1.22420 1.60379 1.19260 0.91557 1.04625 1.21636 0.91773 1.25489 1.00416 0.99231 0.99660 1.70140 1.28213 1.23844 1.36871 0.85193 0.78831 0.78419 0.77714 1.21316 1.21484 1.20137 1.21930 0.86526 0.95676 0.95177 1.19450 1.03725 0.94287 0.98231 1.17618 0.93107 0.89837 0.88564 1.91513 1.72489 1.80670 1.67651 1.21540 1.01419 1.02500 0.93689 1.21292 0.93542 0.92883 0.98902 1.21539 1.03022 0.96253 0.96964 1.17329 0.97536 0.79082 0.95873 1.91488 1.90784 1.34041 1.94883 0.93745 0.90936 0.89240 0.75770 0.90998 0.92016 0.90617 0.88411 0.89123 0.96638 0.96984 0.94249 0.96088 0.95898 0.82817 0.79856 0.80892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 8.88 71.98 0.64 -3.18 16 2 C -0.07 -1.80 2.79 -12.29 -0.03 -1.84 16 3 H 0.13 2.92 7.13 -2.38 -0.02 2.90 16 4 C 0.52 17.75 5.97 87.66 0.52 18.27 16 5 O -0.56 -22.49 11.36 -3.03 -0.03 -22.53 16 6 N -0.70 -23.06 5.07 -416.65 -2.11 -25.17 16 7 C 0.17 5.98 0.83 5.00 0.00 5.98 16 8 C -0.14 -4.31 8.59 71.98 0.62 -3.69 16 9 C -0.13 -4.44 5.97 31.78 0.19 -4.25 16 10 C 0.19 8.98 5.37 86.73 0.47 9.45 16 11 N -0.62 -33.06 3.39 -691.99 -2.35 -35.41 16 12 C -0.24 -14.30 10.26 84.03 0.86 -13.43 16 13 H 0.06 3.83 7.84 -2.91 -0.02 3.81 16 14 C -0.05 -3.16 5.48 84.86 0.47 -2.70 16 15 N -0.94 -56.43 10.36 21.65 0.22 -56.21 16 16 Si 0.97 47.23 29.56 68.60 2.03 49.25 16 17 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 18 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 20 C 0.13 6.15 6.16 86.85 0.54 6.69 16 21 C -0.15 -4.16 4.41 -19.78 -0.09 -4.25 16 22 C 0.13 3.71 6.13 22.37 0.14 3.84 16 23 F -0.14 -5.35 13.80 44.97 0.62 -4.73 16 24 C -0.17 -3.58 10.02 22.32 0.22 -3.36 16 25 C -0.05 -0.67 10.04 22.25 0.22 -0.45 16 26 C -0.16 -2.42 10.03 22.32 0.22 -2.19 16 27 C 0.12 2.64 7.25 22.37 0.16 2.80 16 28 F -0.13 -2.87 16.19 44.97 0.73 -2.14 16 29 H 0.04 1.48 6.33 -2.39 -0.02 1.46 16 30 H 0.07 1.94 7.56 -2.38 -0.02 1.92 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.41 11.88 7.93 -92.71 -0.73 11.15 16 33 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 34 H 0.06 2.12 5.92 -2.38 -0.01 2.11 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 36 H 0.10 2.76 8.09 -2.39 -0.02 2.74 16 37 H 0.09 2.86 8.04 -2.39 -0.02 2.84 16 38 H 0.02 0.81 7.55 -2.39 -0.02 0.80 16 39 H 0.01 0.65 7.36 -2.39 -0.02 0.64 16 40 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 41 H 0.02 0.99 7.98 -2.38 -0.02 0.97 16 42 H 0.02 1.17 6.86 -2.39 -0.02 1.15 16 43 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 44 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -75.33 364.67 4.55 -70.78 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.29 Total: 18.45 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 5.15 Total: 7.70 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -4.24 Total: -116.79 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.03 Total: -22.53 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 1.35 Total: -6.86 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -75.33 4.55 -70.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671660371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.704 kcal (2) G-P(sol) polarization free energy of solvation -75.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds