Wall clock time and date at job start Tue Mar 31 2020 21:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.50694 * 109.47631 * 239.99552 * 2 1 3 5 5 O 1.21278 * 120.00198 * 240.00084 * 4 2 1 6 6 N 1.34777 * 120.00003 * 59.99730 * 4 2 1 7 7 C 1.46497 * 120.00459 * 180.02562 * 6 4 2 8 8 C 1.53003 * 110.88595 * 297.57882 * 7 6 4 9 9 C 1.55151 * 111.00828 * 173.65224 * 7 6 4 10 10 C 1.54336 * 103.02095 * 277.23371 * 9 7 6 11 11 N 1.47020 * 107.26729 * 338.14054 * 10 9 7 12 12 C 1.36929 * 125.65057 * 178.85003 * 11 10 9 13 13 H 1.08004 * 120.00341 * 179.97438 * 12 11 10 14 14 C 1.38815 * 120.00031 * 359.68713 * 12 11 10 15 15 N 1.31617 * 119.99916 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99958 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47093 * 60.00562 * 16 14 12 18 18 H 1.48495 * 109.47002 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47239 * 300.00281 * 16 14 12 20 20 C 1.47424 * 108.70055 * 358.58390 * 11 10 9 21 21 C 1.50700 * 109.46999 * 119.99038 * 2 1 3 22 22 C 1.38423 * 120.02099 * 59.73110 * 21 2 1 23 23 F 1.35106 * 120.01306 * 359.97279 * 22 21 2 24 24 C 1.38480 * 119.97395 * 179.74208 * 22 21 2 25 25 C 1.38202 * 120.02094 * 0.50862 * 24 22 21 26 26 C 1.38203 * 120.05640 * 359.76566 * 25 24 22 27 27 C 1.38416 * 120.03007 * 240.00215 * 21 2 1 28 28 F 1.35103 * 120.01125 * 359.97438 * 27 21 2 29 29 H 1.09002 * 109.46460 * 60.00479 * 1 2 3 30 30 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47273 * 300.00892 * 1 2 3 32 32 H 0.97007 * 120.00127 * 0.02562 * 6 4 2 33 33 H 1.09002 * 109.47168 * 182.42345 * 8 7 6 34 34 H 1.09002 * 109.46759 * 302.42083 * 8 7 6 35 35 H 1.08998 * 109.47461 * 62.42362 * 8 7 6 36 36 H 1.09002 * 110.72090 * 35.79325 * 9 7 6 37 37 H 1.09005 * 110.72307 * 158.88902 * 9 7 6 38 38 H 1.08996 * 109.99181 * 218.66138 * 10 9 7 39 39 H 1.09004 * 109.77801 * 97.49759 * 10 9 7 40 40 H 0.97000 * 120.00284 * 179.97438 * 15 14 12 41 41 H 1.09000 * 110.36737 * 143.19262 * 20 11 10 42 42 H 1.08995 * 110.36886 * 265.51796 * 20 11 10 43 43 H 1.07996 * 119.98580 * 180.23165 * 24 22 21 44 44 H 1.08002 * 119.97458 * 179.74535 * 25 24 22 45 45 H 1.08005 * 119.99207 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2303 5 8 2.7298 -1.6965 -1.1190 6 7 1.7069 -0.2501 -2.4545 7 6 2.1949 -0.9410 -3.6506 8 6 3.7232 -0.9084 -3.7141 9 6 1.5709 -0.3360 -4.9359 10 6 0.2012 -1.0419 -5.0230 11 7 0.2995 -2.2831 -4.2412 12 6 -0.7110 -3.1869 -4.0482 13 1 -0.5375 -4.0725 -3.4549 14 6 -1.9602 -2.9618 -4.6103 15 7 -2.1732 -1.8800 -5.3290 16 14 -3.3388 -4.1944 -4.3464 17 1 -3.6171 -4.3223 -2.8933 18 1 -4.5622 -3.7259 -5.0457 19 1 -2.9331 -5.5151 -4.8909 20 6 1.6679 -2.3968 -3.7047 21 6 2.0324 -0.7102 1.2306 22 6 1.6936 -2.0338 1.4531 23 9 0.9120 -2.6894 0.5673 24 6 2.1601 -2.6870 2.5815 25 6 2.9549 -2.0149 3.4906 26 6 3.2891 -0.6917 3.2724 27 6 2.8281 -0.0380 2.1420 28 9 3.1554 1.2553 1.9286 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.1495 0.5387 -2.5436 33 1 4.0591 -1.3900 -4.6325 34 1 4.0653 0.1265 -3.7005 35 1 4.1340 -1.4382 -2.8548 36 1 1.4460 0.7420 -4.8333 37 1 2.1810 -0.5709 -5.8082 38 1 -0.0321 -1.2756 -6.0618 39 1 -0.5723 -0.3993 -4.6027 40 1 -3.0459 -1.7229 -5.7221 41 1 1.6486 -2.8306 -2.7049 42 1 2.2869 -2.9999 -4.3689 43 1 1.8990 -3.7208 2.7534 44 1 3.3150 -2.5239 4.3725 45 1 3.9100 -0.1673 3.9837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671660372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:50 Heat of formation + Delta-G solvation = -72.503472 kcal Electronic energy + Delta-G solvation = -31045.632002 eV Core-core repulsion = 26699.916625 eV Total energy + Delta-G solvation = -4345.715377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.15562 -48.81475 -40.09838 -38.83063 -37.26114 -34.27777 -33.89387 -31.78855 -30.37806 -30.12826 -29.23349 -28.60810 -25.63757 -24.85199 -23.67456 -22.94495 -22.54252 -20.49038 -19.94070 -18.92753 -18.16980 -17.68210 -17.02106 -16.42847 -16.06992 -15.78655 -15.56702 -15.40212 -15.20278 -14.73650 -14.59104 -14.43208 -14.23147 -13.80234 -13.54064 -13.25575 -12.81992 -12.80467 -12.56911 -12.33562 -12.14189 -12.01384 -11.91992 -11.85723 -11.76265 -11.62528 -11.44411 -10.94796 -10.84625 -10.81934 -10.32546 -10.31576 -10.06646 -9.94390 -9.60026 -9.25953 -8.91504 -8.79248 -8.58784 -8.47393 -6.74484 -5.65704 -2.96977 0.84606 0.92120 2.99730 3.19564 3.44395 3.48302 3.49876 3.60211 3.83042 4.25717 4.35174 4.53194 4.55677 4.65880 4.95514 5.00425 5.13920 5.19399 5.21713 5.42744 5.52506 5.61771 5.66424 5.69920 5.74926 5.76927 5.82330 5.88925 5.97372 6.01959 6.05073 6.17347 6.19271 6.28829 6.38854 6.43823 6.58243 6.67328 6.73017 6.89603 7.20151 7.59346 7.60758 7.84581 7.94702 8.31392 8.62994 9.29088 9.89189 10.55552 11.46366 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.004100 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.417266 B = 6827.173607 C = 7928.526978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 H 0.108 0.892 4 C 0.526 3.474 5 O -0.532 6.532 6 N -0.698 5.698 7 C 0.157 3.843 8 C -0.148 4.148 9 C -0.147 4.147 10 C 0.179 3.821 11 N -0.602 5.602 12 C -0.218 4.218 13 H 0.075 0.925 14 C -0.009 4.009 15 N -0.926 5.926 16 Si 0.909 3.091 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C 0.132 3.868 21 C -0.135 4.135 22 C 0.167 3.833 23 F -0.113 7.113 24 C -0.170 4.170 25 C -0.064 4.064 26 C -0.172 4.172 27 C 0.132 3.868 28 F -0.132 7.132 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.397 0.603 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.251 0.749 41 H 0.057 0.943 42 H 0.023 0.977 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.682 6.847 15.243 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 H 0.126 0.874 4 C 0.311 3.689 5 O -0.409 6.409 6 N -0.348 5.348 7 C 0.071 3.929 8 C -0.207 4.207 9 C -0.185 4.185 10 C 0.054 3.946 11 N -0.328 5.328 12 C -0.347 4.347 13 H 0.093 0.907 14 C -0.205 4.205 15 N -0.574 5.574 16 Si 0.739 3.261 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 C 0.005 3.995 21 C -0.138 4.138 22 C 0.148 3.852 23 F -0.091 7.091 24 C -0.189 4.189 25 C -0.082 4.082 26 C -0.191 4.191 27 C 0.112 3.888 28 F -0.111 7.111 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.231 0.769 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.921 6.128 15.178 19.677 hybrid contribution -1.162 -0.075 -0.228 1.187 sum 9.759 6.053 14.950 18.851 Atomic orbital electron populations 1.21854 0.91059 1.04527 1.02956 1.20182 0.98565 1.00305 0.90295 0.87439 1.20019 0.80284 0.84483 0.84155 1.90652 1.38068 1.25596 1.86545 1.45710 1.52864 1.31346 1.04865 1.21476 0.92655 0.94775 0.84042 1.21983 0.94640 1.01294 1.02762 1.23230 1.00288 0.99469 0.95551 1.21135 0.90028 0.87054 0.96393 1.44413 1.06501 1.22964 1.58891 1.19007 0.88988 1.00140 1.26529 0.90730 1.24730 0.97475 0.97945 1.00334 1.69934 1.22241 1.26572 1.38652 0.86241 0.81702 0.80566 0.77556 1.21281 1.21675 1.21259 1.21876 0.87151 0.92391 0.98079 1.19398 1.02370 0.94258 0.97725 1.17157 0.91342 0.89102 0.87632 1.91605 1.70733 1.80147 1.66621 1.21227 1.01476 1.01667 0.94487 1.20789 0.95591 0.93199 0.98606 1.21077 1.04178 0.96062 0.97783 1.17140 0.97407 0.78986 0.95219 1.91493 1.90793 1.34032 1.94772 0.90850 0.90634 0.91652 0.76895 0.91925 0.93220 0.91131 0.91854 0.90992 0.93962 0.93654 0.93908 0.92449 0.95978 0.84072 0.84149 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.88 37.16 0.33 -1.67 16 2 C -0.07 -1.01 2.79 -92.92 -0.26 -1.27 16 3 H 0.11 1.29 7.13 -51.93 -0.37 0.92 16 4 C 0.53 8.99 5.99 -10.99 -0.07 8.92 16 5 O -0.53 -10.57 11.39 5.56 0.06 -10.50 16 6 N -0.70 -11.63 5.07 -45.63 -0.23 -11.86 16 7 C 0.16 2.84 0.83 -129.67 -0.11 2.73 16 8 C -0.15 -2.34 8.59 37.16 0.32 -2.02 16 9 C -0.15 -2.64 5.99 -24.89 -0.15 -2.79 16 10 C 0.18 4.25 5.37 -3.06 -0.02 4.23 16 11 N -0.60 -15.59 3.39 -170.07 -0.58 -16.16 16 12 C -0.22 -6.24 10.28 -15.06 -0.15 -6.40 16 13 H 0.07 2.13 7.83 -52.48 -0.41 1.71 16 14 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 15 N -0.93 -27.09 10.31 55.49 0.57 -26.52 16 16 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 C 0.13 2.97 6.10 -2.53 -0.02 2.95 16 21 C -0.14 -1.88 4.40 -104.49 -0.46 -2.34 16 22 C 0.17 2.44 6.14 -39.42 -0.24 2.20 16 23 F -0.11 -2.01 13.82 2.25 0.03 -1.98 16 24 C -0.17 -1.92 10.03 -39.51 -0.40 -2.31 16 25 C -0.06 -0.57 10.04 -39.61 -0.40 -0.96 16 26 C -0.17 -1.65 10.03 -39.51 -0.40 -2.04 16 27 C 0.13 1.59 7.25 -39.43 -0.29 1.30 16 28 F -0.13 -1.59 16.19 2.25 0.04 -1.55 16 29 H 0.07 0.97 7.56 -51.93 -0.39 0.58 16 30 H 0.07 1.22 6.29 -51.93 -0.33 0.89 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.40 5.84 7.91 -40.82 -0.32 5.52 16 33 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.22 6.53 -51.93 -0.34 0.88 16 36 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 37 H 0.07 1.21 8.01 -51.93 -0.42 0.80 16 38 H 0.04 1.12 7.52 -51.93 -0.39 0.73 16 39 H 0.05 1.17 7.37 -51.93 -0.38 0.79 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.06 1.41 6.32 -51.93 -0.33 1.08 16 42 H 0.02 0.51 8.04 -51.93 -0.42 0.09 16 43 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -32.94 364.65 -8.21 -41.15 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.18 Total: 4.17 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.39 Total: 0.19 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.24 Total: -54.54 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.06 Total: -10.50 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.07 Total: -3.53 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.94 -8.21 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671660372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.349 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds