Wall clock time and date at job start Tue Mar 31 2020 21:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.50694 * 109.47631 * 239.99552 * 2 1 3 5 5 O 1.21278 * 120.00198 * 240.00084 * 4 2 1 6 6 N 1.34777 * 120.00003 * 59.99730 * 4 2 1 7 7 C 1.46497 * 120.00459 * 180.02562 * 6 4 2 8 8 C 1.53003 * 110.88595 * 297.57882 * 7 6 4 9 9 C 1.55151 * 111.00828 * 173.65224 * 7 6 4 10 10 C 1.54336 * 103.02095 * 277.23371 * 9 7 6 11 11 N 1.47020 * 107.26729 * 338.14054 * 10 9 7 12 12 C 1.36929 * 125.65057 * 178.85003 * 11 10 9 13 13 H 1.08004 * 120.00341 * 179.97438 * 12 11 10 14 14 C 1.38815 * 120.00031 * 359.68713 * 12 11 10 15 15 N 1.31617 * 119.99916 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99958 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47093 * 60.00562 * 16 14 12 18 18 H 1.48495 * 109.47002 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47239 * 300.00281 * 16 14 12 20 20 C 1.47424 * 108.70055 * 358.58390 * 11 10 9 21 21 C 1.50700 * 109.46999 * 119.99038 * 2 1 3 22 22 C 1.38423 * 120.02099 * 59.73110 * 21 2 1 23 23 F 1.35106 * 120.01306 * 359.97279 * 22 21 2 24 24 C 1.38480 * 119.97395 * 179.74208 * 22 21 2 25 25 C 1.38202 * 120.02094 * 0.50862 * 24 22 21 26 26 C 1.38203 * 120.05640 * 359.76566 * 25 24 22 27 27 C 1.38416 * 120.03007 * 240.00215 * 21 2 1 28 28 F 1.35103 * 120.01125 * 359.97438 * 27 21 2 29 29 H 1.09002 * 109.46460 * 60.00479 * 1 2 3 30 30 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47273 * 300.00892 * 1 2 3 32 32 H 0.97007 * 120.00127 * 0.02562 * 6 4 2 33 33 H 1.09002 * 109.47168 * 182.42345 * 8 7 6 34 34 H 1.09002 * 109.46759 * 302.42083 * 8 7 6 35 35 H 1.08998 * 109.47461 * 62.42362 * 8 7 6 36 36 H 1.09002 * 110.72090 * 35.79325 * 9 7 6 37 37 H 1.09005 * 110.72307 * 158.88902 * 9 7 6 38 38 H 1.08996 * 109.99181 * 218.66138 * 10 9 7 39 39 H 1.09004 * 109.77801 * 97.49759 * 10 9 7 40 40 H 0.97000 * 120.00284 * 179.97438 * 15 14 12 41 41 H 1.09000 * 110.36737 * 143.19262 * 20 11 10 42 42 H 1.08995 * 110.36886 * 265.51796 * 20 11 10 43 43 H 1.07996 * 119.98580 * 180.23165 * 24 22 21 44 44 H 1.08002 * 119.97458 * 179.74535 * 25 24 22 45 45 H 1.08005 * 119.99207 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2303 5 8 2.7298 -1.6965 -1.1190 6 7 1.7069 -0.2501 -2.4545 7 6 2.1949 -0.9410 -3.6506 8 6 3.7232 -0.9084 -3.7141 9 6 1.5709 -0.3360 -4.9359 10 6 0.2012 -1.0419 -5.0230 11 7 0.2995 -2.2831 -4.2412 12 6 -0.7110 -3.1869 -4.0482 13 1 -0.5375 -4.0725 -3.4549 14 6 -1.9602 -2.9618 -4.6103 15 7 -2.1732 -1.8800 -5.3290 16 14 -3.3388 -4.1944 -4.3464 17 1 -3.6171 -4.3223 -2.8933 18 1 -4.5622 -3.7259 -5.0457 19 1 -2.9331 -5.5151 -4.8909 20 6 1.6679 -2.3968 -3.7047 21 6 2.0324 -0.7102 1.2306 22 6 1.6936 -2.0338 1.4531 23 9 0.9120 -2.6894 0.5673 24 6 2.1601 -2.6870 2.5815 25 6 2.9549 -2.0149 3.4906 26 6 3.2891 -0.6917 3.2724 27 6 2.8281 -0.0380 2.1420 28 9 3.1554 1.2553 1.9286 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.1495 0.5387 -2.5436 33 1 4.0591 -1.3900 -4.6325 34 1 4.0653 0.1265 -3.7005 35 1 4.1340 -1.4382 -2.8548 36 1 1.4460 0.7420 -4.8333 37 1 2.1810 -0.5709 -5.8082 38 1 -0.0321 -1.2756 -6.0618 39 1 -0.5723 -0.3993 -4.6027 40 1 -3.0459 -1.7229 -5.7221 41 1 1.6486 -2.8306 -2.7049 42 1 2.2869 -2.9999 -4.3689 43 1 1.8990 -3.7208 2.7534 44 1 3.3150 -2.5239 4.3725 45 1 3.9100 -0.1673 3.9837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671660372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:49 Heat of formation + Delta-G solvation = -92.734781 kcal Electronic energy + Delta-G solvation = -31046.509297 eV Core-core repulsion = 26699.916625 eV Total energy + Delta-G solvation = -4346.592672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.04288 -49.97540 -41.44510 -39.87886 -38.77193 -35.68030 -35.41319 -33.54241 -31.73881 -31.23175 -30.48326 -30.16314 -27.52800 -26.03340 -25.36166 -23.87478 -23.65792 -22.21892 -21.36580 -20.39983 -19.15582 -18.99930 -18.61887 -17.71507 -17.24274 -16.84924 -16.80123 -16.56286 -16.54475 -16.29980 -16.09550 -15.62329 -15.51345 -15.35211 -14.94867 -14.69529 -14.24891 -13.92245 -13.75868 -13.70317 -13.52518 -13.40457 -13.26956 -13.11424 -13.01712 -12.87432 -12.82295 -12.76531 -12.48755 -12.16188 -12.07297 -11.98796 -11.90347 -11.70051 -11.53730 -10.71201 -10.60111 -9.96720 -9.86959 -9.69705 -8.86483 -7.86032 -5.19247 -0.02260 0.03434 1.41445 1.44082 1.50613 1.67104 2.17098 2.47378 2.49080 2.93309 3.26839 3.31792 3.44371 3.52487 3.64163 3.71049 3.87975 3.93206 4.04178 4.07867 4.17809 4.21377 4.25496 4.62002 4.63142 4.67536 4.70133 4.79998 4.84300 4.85915 4.91715 4.92916 5.02389 5.03447 5.07466 5.08200 5.18325 5.22121 5.33512 5.41289 5.64524 5.69621 5.77645 5.81419 6.19603 6.62471 7.11678 7.31360 7.77256 8.41786 9.23503 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.004100 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.417266 B = 6827.173607 C = 7928.526978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 H 0.130 0.870 4 C 0.520 3.480 5 O -0.562 6.562 6 N -0.697 5.697 7 C 0.167 3.833 8 C -0.138 4.138 9 C -0.128 4.128 10 C 0.187 3.813 11 N -0.618 5.618 12 C -0.241 4.241 13 H 0.063 0.937 14 C -0.055 4.055 15 N -0.944 5.944 16 Si 0.970 3.030 17 H -0.283 1.283 18 H -0.287 1.287 19 H -0.280 1.280 20 C 0.130 3.870 21 C -0.154 4.154 22 C 0.127 3.873 23 F -0.145 7.145 24 C -0.173 4.173 25 C -0.049 4.049 26 C -0.159 4.159 27 C 0.121 3.879 28 F -0.133 7.133 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.407 0.593 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.008 0.992 39 H 0.019 0.981 40 H 0.248 0.752 41 H 0.029 0.971 42 H 0.020 0.980 43 H 0.153 0.847 44 H 0.184 0.816 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.260 8.171 17.136 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.087 4.087 3 H 0.148 0.852 4 C 0.306 3.694 5 O -0.441 6.441 6 N -0.348 5.348 7 C 0.080 3.920 8 C -0.196 4.196 9 C -0.167 4.167 10 C 0.062 3.938 11 N -0.345 5.345 12 C -0.370 4.370 13 H 0.081 0.919 14 C -0.249 4.249 15 N -0.593 5.593 16 Si 0.798 3.202 17 H -0.209 1.209 18 H -0.212 1.212 19 H -0.207 1.207 20 C 0.004 3.996 21 C -0.157 4.157 22 C 0.107 3.893 23 F -0.124 7.124 24 C -0.192 4.192 25 C -0.066 4.066 26 C -0.177 4.177 27 C 0.102 3.898 28 F -0.112 7.112 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.243 0.757 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.171 0.829 44 H 0.202 0.798 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 12.516 7.472 17.078 22.453 hybrid contribution -1.618 -0.546 -0.732 1.858 sum 10.897 6.926 16.346 20.831 Atomic orbital electron populations 1.21793 0.91169 1.02688 1.04114 1.20155 0.98350 1.01037 0.89109 0.85181 1.20607 0.79634 0.84160 0.84984 1.90630 1.39472 1.26911 1.87052 1.45716 1.53013 1.31505 1.04566 1.21341 0.94294 0.91633 0.84712 1.21895 0.92109 1.02976 1.02630 1.23104 0.96650 1.00765 0.96149 1.20929 0.92945 0.86254 0.93675 1.44643 1.07231 1.23219 1.59361 1.19221 0.90374 1.00701 1.26676 0.91873 1.25457 0.99401 0.99775 1.00241 1.70128 1.22350 1.27749 1.39046 0.85288 0.78836 0.78584 0.77456 1.20901 1.21237 1.20656 1.21950 0.85883 0.95702 0.96095 1.19455 1.03640 0.94340 0.98216 1.17647 0.92916 0.89979 0.88724 1.91522 1.71977 1.80836 1.68019 1.21542 1.01373 1.02430 0.93838 1.21287 0.93584 0.92906 0.98857 1.21539 1.02992 0.96225 0.96974 1.17324 0.97563 0.79092 0.95828 1.91489 1.90771 1.34020 1.94873 0.90841 0.93884 0.89256 0.75723 0.90711 0.90453 0.92820 0.88390 0.89113 0.97404 0.96326 0.94303 0.95217 0.96270 0.82901 0.79843 0.80827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.88 71.98 0.64 -3.26 16 2 C -0.07 -1.83 2.79 -12.29 -0.03 -1.86 16 3 H 0.13 2.96 7.13 -2.39 -0.02 2.94 16 4 C 0.52 18.04 5.99 87.66 0.53 18.56 16 5 O -0.56 -23.06 11.39 -3.02 -0.03 -23.09 16 6 N -0.70 -23.08 5.07 -416.66 -2.11 -25.19 16 7 C 0.17 5.95 0.83 5.00 0.00 5.96 16 8 C -0.14 -4.09 8.59 71.98 0.62 -3.47 16 9 C -0.13 -4.44 5.99 31.78 0.19 -4.24 16 10 C 0.19 9.09 5.37 86.73 0.47 9.56 16 11 N -0.62 -33.30 3.39 -691.97 -2.35 -35.65 16 12 C -0.24 -14.35 10.28 84.04 0.86 -13.49 16 13 H 0.06 3.80 7.83 -2.91 -0.02 3.77 16 14 C -0.06 -3.24 5.49 84.86 0.47 -2.78 16 15 N -0.94 -56.81 10.31 21.65 0.22 -56.59 16 16 Si 0.97 47.56 29.55 68.60 2.03 49.59 16 17 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 18 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 19 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 20 C 0.13 6.04 6.10 86.86 0.53 6.57 16 21 C -0.15 -4.24 4.40 -19.78 -0.09 -4.33 16 22 C 0.13 3.78 6.14 22.37 0.14 3.92 16 23 F -0.15 -5.55 13.82 44.97 0.62 -4.93 16 24 C -0.17 -3.73 10.03 22.32 0.22 -3.51 16 25 C -0.05 -0.70 10.04 22.25 0.22 -0.48 16 26 C -0.16 -2.48 10.03 22.32 0.22 -2.25 16 27 C 0.12 2.69 7.25 22.37 0.16 2.85 16 28 F -0.13 -2.88 16.19 44.97 0.73 -2.16 16 29 H 0.07 1.98 7.56 -2.39 -0.02 1.96 16 30 H 0.04 1.48 6.29 -2.39 -0.02 1.46 16 31 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.41 11.66 7.91 -92.70 -0.73 10.93 16 33 H 0.07 2.03 8.11 -2.39 -0.02 2.01 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 35 H 0.05 1.81 6.53 -2.39 -0.02 1.79 16 36 H 0.10 2.75 8.05 -2.39 -0.02 2.73 16 37 H 0.09 2.85 8.01 -2.38 -0.02 2.83 16 38 H 0.01 0.43 7.52 -2.39 -0.02 0.41 16 39 H 0.02 0.99 7.37 -2.39 -0.02 0.97 16 40 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.03 1.54 6.32 -2.39 -0.02 1.52 16 42 H 0.02 0.91 8.04 -2.39 -0.02 0.89 16 43 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 44 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 45 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -76.41 364.65 4.55 -71.86 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.29 Total: 18.40 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 5.15 Total: 7.75 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -4.24 Total: -117.42 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.03 Total: -23.09 kcal Atomic # 9 Polarization: -8.43 SS G_CDS: 1.35 Total: -7.08 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -76.41 4.55 -71.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671660372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.870 kcal (2) G-P(sol) polarization free energy of solvation -76.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds