Wall clock time and date at job start Tue Mar 31 2020 21:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47197 * 2 1 4 4 N 1.46500 * 109.47168 * 120.00047 * 2 1 3 5 5 C 1.34779 * 120.00149 * 275.00045 * 4 2 1 6 6 O 1.21277 * 119.99694 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99792 * 180.02562 * 5 4 2 8 8 S 1.81010 * 109.46694 * 180.02562 * 7 5 4 9 9 C 1.76201 * 99.99674 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99967 * 359.97438 * 9 8 7 11 11 C 1.38796 * 119.99818 * 180.02562 * 9 8 7 12 12 N 1.31631 * 120.00323 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99933 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47248 * 59.99740 * 13 11 9 15 15 H 1.48506 * 109.46983 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47077 * 299.99734 * 13 11 9 17 17 C 1.52996 * 109.47080 * 240.00342 * 2 1 3 18 18 C 1.53519 * 114.17228 * 174.87364 * 17 2 1 19 19 N 1.47478 * 87.93022 * 220.32546 * 18 17 2 20 20 C 1.46908 * 110.99493 * 138.70112 * 19 18 17 21 21 C 1.53005 * 109.46699 * 169.99872 * 20 19 18 22 22 N 1.46501 * 109.46979 * 179.97438 * 21 20 19 23 23 C 1.34950 * 126.03682 * 124.71606 * 22 21 20 24 24 C 1.35314 * 107.74350 * 179.84032 * 23 22 21 25 25 C 1.39868 * 107.92292 * 0.42367 * 24 23 22 26 26 N 1.30836 * 108.20086 * 359.73868 * 25 24 23 27 27 C 1.47478 * 87.83763 * 27.00854 * 19 18 17 28 28 H 1.08998 * 109.46932 * 64.93786 * 1 2 3 29 29 H 1.09001 * 109.46948 * 184.94217 * 1 2 3 30 30 H 1.09005 * 109.47099 * 304.93940 * 1 2 3 31 31 H 0.97001 * 120.00039 * 95.00244 * 4 2 1 32 32 H 1.09001 * 109.47098 * 299.99618 * 7 5 4 33 33 H 1.08994 * 109.47128 * 60.00136 * 7 5 4 34 34 H 0.96994 * 120.00269 * 180.02562 * 12 11 9 35 35 H 1.08999 * 113.38346 * 307.94801 * 17 2 1 36 36 H 1.08998 * 113.47913 * 105.55945 * 18 17 2 37 37 H 1.09001 * 113.47011 * 335.09226 * 18 17 2 38 38 H 1.08996 * 109.47367 * 49.99929 * 20 19 18 39 39 H 1.08999 * 109.46978 * 289.99426 * 20 19 18 40 40 H 1.09005 * 109.47293 * 299.99875 * 21 20 19 41 41 H 1.09002 * 109.47333 * 60.00341 * 21 20 19 42 42 H 1.07999 * 126.12402 * 359.97438 * 23 22 21 43 43 H 1.08001 * 126.04250 * 180.15725 * 24 23 22 44 44 H 1.08003 * 125.90043 * 179.76175 * 25 24 23 45 45 H 1.09005 * 113.47591 * 87.75203 * 27 19 18 46 46 H 1.08994 * 113.47627 * 218.21774 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3572 6 8 1.8590 1.1585 2.4115 7 6 2.6499 -0.7286 3.5874 8 16 2.7100 0.4342 4.9733 9 6 3.3132 -0.6310 6.2405 10 1 3.5227 -1.6674 6.0204 11 6 3.5182 -0.1385 7.5218 12 7 3.2625 1.1246 7.7902 13 14 4.1585 -1.2676 8.8652 14 1 5.4857 -1.8038 8.4703 15 1 4.2893 -0.5046 10.1325 16 1 3.2086 -2.3922 9.0609 17 6 2.0400 -0.7212 -1.2493 18 6 3.5647 -0.6766 -1.4224 19 7 3.3411 -0.4648 -2.8647 20 6 4.2687 0.5413 -3.3990 21 6 4.1814 0.5552 -4.9265 22 7 5.1059 1.5589 -5.4593 23 6 6.0784 1.3392 -6.3688 24 6 6.7034 2.5174 -6.5971 25 6 6.0984 3.4885 -5.7926 26 7 5.1407 2.9151 -5.1101 27 6 2.0436 0.1442 -2.5172 28 1 -0.3633 0.4353 -0.9309 29 1 -0.3633 -1.0239 0.0885 30 1 -0.3633 0.5886 0.8425 31 1 2.2491 -1.6318 1.1526 32 1 1.9777 -1.5509 3.8325 33 1 3.6492 -1.1204 3.3978 34 1 3.4061 1.4689 8.6856 35 1 1.6041 -1.7109 -1.3857 36 1 4.0556 -1.6225 -1.1934 37 1 4.0333 0.1733 -0.9262 38 1 5.2861 0.2950 -3.0954 39 1 4.0015 1.5242 -3.0108 40 1 4.4485 -0.4278 -5.3146 41 1 3.1639 0.8015 -5.2301 42 1 6.3139 0.3929 -6.8331 43 1 7.5270 2.6786 -7.2770 44 1 6.3740 4.5317 -5.7436 45 1 2.1064 1.2131 -2.3131 46 1 1.2455 -0.1060 -3.2160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675279301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:39 Heat of formation + Delta-G solvation = 78.247154 kcal Electronic energy + Delta-G solvation = -25641.200022 eV Core-core repulsion = 21888.154821 eV Total energy + Delta-G solvation = -3753.045201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47962 -40.82278 -39.02983 -35.58721 -34.25951 -32.43408 -31.67961 -30.64053 -29.86967 -28.52683 -26.74276 -26.26998 -25.48321 -23.72833 -21.87897 -21.37820 -20.80855 -20.38514 -19.94176 -17.86306 -17.64578 -16.65668 -16.45714 -16.12293 -15.80587 -15.24074 -14.93070 -14.81594 -14.80529 -14.44774 -14.08779 -13.99061 -13.60085 -13.30630 -13.16073 -13.13110 -12.93710 -12.76540 -12.61220 -12.52756 -12.01866 -11.90166 -11.50090 -11.20407 -11.07337 -11.04703 -11.03563 -10.91906 -10.81697 -10.75998 -9.82907 -9.78301 -9.47755 -9.35207 -9.06828 -8.94829 -8.88203 -8.24581 -6.50581 -6.21971 -3.92724 1.56103 2.12048 2.53808 2.99321 3.08841 3.22975 3.26636 3.29603 3.52751 3.63582 4.11089 4.17664 4.20133 4.29754 4.38969 4.49101 4.69994 4.83602 4.84080 4.91251 5.00255 5.06568 5.12995 5.16601 5.18741 5.22903 5.30586 5.31901 5.41275 5.43876 5.46481 5.55912 5.67480 5.68236 5.77031 5.81352 5.88122 6.02885 6.13158 6.20200 6.31384 6.50050 6.65373 6.67971 7.37640 7.58696 7.71382 8.34482 8.61481 9.23150 10.85375 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016013 B = 0.001823 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.149315 B =15353.898710 C =16230.769990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.086 0.914 4 N -0.733 5.733 5 C 0.533 3.467 6 O -0.518 6.518 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.122 4.122 18 C 0.009 3.991 19 N -0.473 5.473 20 C 0.008 3.992 21 C 0.144 3.856 22 N -0.372 5.372 23 C 0.054 3.946 24 C -0.277 4.277 25 C 0.044 3.956 26 N -0.295 5.295 27 C 0.007 3.993 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.269 0.731 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.173 0.827 43 H 0.147 0.853 44 H 0.183 0.817 45 H 0.077 0.923 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.687 -4.829 -29.860 30.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.049 3.951 3 H 0.104 0.896 4 N -0.387 5.387 5 C 0.319 3.681 6 O -0.392 6.392 7 C -0.304 4.304 8 S 0.166 5.834 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.141 4.141 18 C -0.120 4.120 19 N -0.195 5.195 20 C -0.122 4.122 21 C 0.022 3.978 22 N -0.155 5.155 23 C -0.092 4.092 24 C -0.306 4.306 25 C -0.142 4.142 26 N -0.117 5.117 27 C -0.122 4.122 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.231 0.769 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.190 0.810 43 H 0.164 0.836 44 H 0.200 0.800 45 H 0.095 0.905 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.244 -3.191 -29.211 29.386 hybrid contribution 1.648 -1.961 0.612 2.634 sum 1.893 -5.152 -28.600 29.121 Atomic orbital electron populations 1.22156 0.95104 1.02315 1.02502 1.20835 0.94267 0.97007 0.83008 0.89557 1.46033 1.69387 1.13920 1.09382 1.20306 0.76789 0.87217 0.83756 1.90699 1.48322 1.15786 1.84373 1.23535 1.03622 1.04864 0.98406 1.85400 1.86311 1.12901 0.98751 1.22827 1.51101 0.98146 0.96389 0.90989 1.24991 0.95093 0.95544 0.97947 1.70005 1.45448 1.13226 1.21602 0.86227 0.79311 0.80017 0.79959 1.19945 1.20804 1.19942 1.23038 0.96142 1.00740 0.94222 1.23819 0.96772 1.03027 0.88391 1.68766 1.02931 1.32581 1.15247 1.22911 0.98762 0.96205 0.94296 1.21530 0.92701 0.89136 0.94413 1.48755 1.26866 1.07254 1.32656 1.22602 0.91498 1.00664 0.94481 1.21538 1.07501 0.92431 1.09174 1.23935 0.94360 1.00567 0.95383 1.77384 1.22424 0.88439 1.23448 1.23966 0.93838 0.98202 0.96241 0.91913 0.92405 0.91601 0.76868 0.89249 0.89296 0.92123 0.87314 0.89255 0.90641 0.90367 0.91755 0.87905 0.89716 0.80978 0.83554 0.80043 0.90512 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.47 37.16 0.35 -1.33 16 2 C 0.15 1.67 2.34 -67.93 -0.16 1.51 16 3 H 0.09 1.14 7.44 -51.93 -0.39 0.75 16 4 N -0.73 -9.16 4.96 -53.81 -0.27 -9.42 16 5 C 0.53 9.63 7.81 -10.99 -0.09 9.55 16 6 O -0.52 -11.51 15.52 5.56 0.09 -11.42 16 7 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 8 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 9 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 10 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 13 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 C -0.12 -0.95 3.49 -90.09 -0.31 -1.27 16 18 C 0.01 0.07 7.14 -7.54 -0.05 0.02 16 19 N -0.47 -3.69 6.33 -244.62 -1.55 -5.24 16 20 C 0.01 0.06 5.00 -3.82 -0.02 0.04 16 21 C 0.14 1.00 6.84 -4.04 -0.03 0.97 16 22 N -0.37 -3.30 3.68 -61.36 -0.23 -3.53 16 23 C 0.05 0.38 11.45 -17.22 -0.20 0.19 16 24 C -0.28 -2.07 10.80 -40.01 -0.43 -2.50 16 25 C 0.04 0.39 12.03 -17.37 -0.21 0.18 16 26 N -0.30 -3.25 12.42 30.62 0.38 -2.87 16 27 C 0.01 0.05 7.26 -7.55 -0.05 0.00 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.40 3.85 8.60 -40.82 -0.35 3.50 16 32 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 33 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 34 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.75 7.87 -51.93 -0.41 0.34 16 38 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.06 0.64 7.30 -51.93 -0.38 0.26 16 40 H 0.10 0.52 8.07 -51.93 -0.42 0.10 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.18 1.10 8.06 -52.48 -0.42 0.67 16 45 H 0.08 0.63 7.28 -51.93 -0.38 0.25 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -35.89 400.55 -10.18 -46.07 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.36 Total: 1.73 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -0.78 Total: -8.43 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -0.93 Total: -46.51 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.89 -10.18 -46.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675279301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.321 kcal (2) G-P(sol) polarization free energy of solvation -35.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds