Wall clock time and date at job start Tue Mar 31 2020 21:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47197 * 2 1 4 4 N 1.46500 * 109.47168 * 120.00047 * 2 1 3 5 5 C 1.34779 * 120.00149 * 275.00045 * 4 2 1 6 6 O 1.21277 * 119.99694 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99792 * 180.02562 * 5 4 2 8 8 S 1.81010 * 109.46694 * 180.02562 * 7 5 4 9 9 C 1.76201 * 99.99674 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99967 * 359.97438 * 9 8 7 11 11 C 1.38796 * 119.99818 * 180.02562 * 9 8 7 12 12 N 1.31631 * 120.00323 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99933 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47248 * 59.99740 * 13 11 9 15 15 H 1.48506 * 109.46983 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47077 * 299.99734 * 13 11 9 17 17 C 1.52996 * 109.47080 * 240.00342 * 2 1 3 18 18 C 1.53519 * 114.17228 * 174.87364 * 17 2 1 19 19 N 1.47478 * 87.93022 * 220.32546 * 18 17 2 20 20 C 1.46908 * 110.99493 * 138.70112 * 19 18 17 21 21 C 1.53005 * 109.46699 * 169.99872 * 20 19 18 22 22 N 1.46501 * 109.46979 * 179.97438 * 21 20 19 23 23 C 1.34950 * 126.03682 * 124.71606 * 22 21 20 24 24 C 1.35314 * 107.74350 * 179.84032 * 23 22 21 25 25 C 1.39868 * 107.92292 * 0.42367 * 24 23 22 26 26 N 1.30836 * 108.20086 * 359.73868 * 25 24 23 27 27 C 1.47478 * 87.83763 * 27.00854 * 19 18 17 28 28 H 1.08998 * 109.46932 * 64.93786 * 1 2 3 29 29 H 1.09001 * 109.46948 * 184.94217 * 1 2 3 30 30 H 1.09005 * 109.47099 * 304.93940 * 1 2 3 31 31 H 0.97001 * 120.00039 * 95.00244 * 4 2 1 32 32 H 1.09001 * 109.47098 * 299.99618 * 7 5 4 33 33 H 1.08994 * 109.47128 * 60.00136 * 7 5 4 34 34 H 0.96994 * 120.00269 * 180.02562 * 12 11 9 35 35 H 1.08999 * 113.38346 * 307.94801 * 17 2 1 36 36 H 1.08998 * 113.47913 * 105.55945 * 18 17 2 37 37 H 1.09001 * 113.47011 * 335.09226 * 18 17 2 38 38 H 1.08996 * 109.47367 * 49.99929 * 20 19 18 39 39 H 1.08999 * 109.46978 * 289.99426 * 20 19 18 40 40 H 1.09005 * 109.47293 * 299.99875 * 21 20 19 41 41 H 1.09002 * 109.47333 * 60.00341 * 21 20 19 42 42 H 1.07999 * 126.12402 * 359.97438 * 23 22 21 43 43 H 1.08001 * 126.04250 * 180.15725 * 24 23 22 44 44 H 1.08003 * 125.90043 * 179.76175 * 25 24 23 45 45 H 1.09005 * 113.47591 * 87.75203 * 27 19 18 46 46 H 1.08994 * 113.47627 * 218.21774 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3572 6 8 1.8590 1.1585 2.4115 7 6 2.6499 -0.7286 3.5874 8 16 2.7100 0.4342 4.9733 9 6 3.3132 -0.6310 6.2405 10 1 3.5227 -1.6674 6.0204 11 6 3.5182 -0.1385 7.5218 12 7 3.2625 1.1246 7.7902 13 14 4.1585 -1.2676 8.8652 14 1 5.4857 -1.8038 8.4703 15 1 4.2893 -0.5046 10.1325 16 1 3.2086 -2.3922 9.0609 17 6 2.0400 -0.7212 -1.2493 18 6 3.5647 -0.6766 -1.4224 19 7 3.3411 -0.4648 -2.8647 20 6 4.2687 0.5413 -3.3990 21 6 4.1814 0.5552 -4.9265 22 7 5.1059 1.5589 -5.4593 23 6 6.0784 1.3392 -6.3688 24 6 6.7034 2.5174 -6.5971 25 6 6.0984 3.4885 -5.7926 26 7 5.1407 2.9151 -5.1101 27 6 2.0436 0.1442 -2.5172 28 1 -0.3633 0.4353 -0.9309 29 1 -0.3633 -1.0239 0.0885 30 1 -0.3633 0.5886 0.8425 31 1 2.2491 -1.6318 1.1526 32 1 1.9777 -1.5509 3.8325 33 1 3.6492 -1.1204 3.3978 34 1 3.4061 1.4689 8.6856 35 1 1.6041 -1.7109 -1.3857 36 1 4.0556 -1.6225 -1.1934 37 1 4.0333 0.1733 -0.9262 38 1 5.2861 0.2950 -3.0954 39 1 4.0015 1.5242 -3.0108 40 1 4.4485 -0.4278 -5.3146 41 1 3.1639 0.8015 -5.2301 42 1 6.3139 0.3929 -6.8331 43 1 7.5270 2.6786 -7.2770 44 1 6.3740 4.5317 -5.7436 45 1 2.1064 1.2131 -2.3131 46 1 1.2455 -0.1060 -3.2160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675279301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:38 Heat of formation + Delta-G solvation = 51.238245 kcal Electronic energy + Delta-G solvation = -25642.371216 eV Core-core repulsion = 21888.154821 eV Total energy + Delta-G solvation = -3754.216395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.08081 -41.58944 -40.34355 -36.61870 -35.02222 -34.58927 -32.79548 -31.36895 -30.61173 -29.84572 -27.67174 -27.39756 -26.93573 -24.50321 -22.74737 -21.95269 -21.66005 -21.34028 -20.84136 -19.78067 -18.22197 -17.86598 -17.66268 -16.88448 -16.80066 -16.56631 -16.40598 -16.09945 -15.73825 -15.56198 -15.04668 -14.82369 -14.68901 -14.52573 -14.24273 -14.03431 -13.79732 -13.67536 -13.61004 -13.27983 -13.17510 -13.09920 -12.87984 -12.85639 -12.60662 -12.25186 -11.95378 -11.86024 -11.72908 -11.55784 -11.50022 -11.13405 -10.90524 -10.42675 -10.28171 -10.24400 -9.97271 -9.52246 -8.67368 -8.34967 -6.13299 0.98084 1.26482 1.43404 1.46446 1.56080 1.58293 1.62992 1.95258 2.23308 2.28307 2.86689 2.99003 3.27945 3.39479 3.56582 3.64292 3.72251 3.96120 4.05428 4.10999 4.15442 4.21683 4.28022 4.29870 4.34998 4.35858 4.44216 4.49688 4.50985 4.62786 4.70399 4.77557 4.79302 4.84437 4.90476 4.98015 5.13324 5.15649 5.19114 5.33648 5.40944 5.53121 5.72790 5.84104 6.16156 6.19044 6.54172 6.76772 7.06082 7.27921 8.73965 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016013 B = 0.001823 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.149315 B =15353.898710 C =16230.769990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.057 0.943 4 N -0.706 5.706 5 C 0.535 3.465 6 O -0.567 6.567 7 C -0.129 4.129 8 S -0.154 6.154 9 C -0.547 4.547 10 H 0.083 0.917 11 C 0.012 3.988 12 N -0.912 5.912 13 Si 0.999 3.001 14 H -0.262 1.262 15 H -0.279 1.279 16 H -0.261 1.261 17 C -0.105 4.105 18 C 0.004 3.996 19 N -0.463 5.463 20 C 0.016 3.984 21 C 0.146 3.854 22 N -0.382 5.382 23 C 0.056 3.944 24 C -0.288 4.288 25 C 0.032 3.968 26 N -0.346 5.346 27 C 0.008 3.992 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.030 0.970 31 H 0.417 0.583 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.271 0.729 35 H 0.135 0.865 36 H 0.102 0.898 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.129 0.871 41 H 0.085 0.915 42 H 0.209 0.791 43 H 0.167 0.833 44 H 0.198 0.802 45 H 0.063 0.937 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 -8.307 -31.778 32.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.075 0.925 4 N -0.359 5.359 5 C 0.321 3.679 6 O -0.446 6.446 7 C -0.280 4.280 8 S 0.073 5.927 9 C -0.695 4.695 10 H 0.102 0.898 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.186 1.186 15 H -0.205 1.205 16 H -0.186 1.186 17 C -0.124 4.124 18 C -0.125 4.125 19 N -0.185 5.185 20 C -0.114 4.114 21 C 0.025 3.975 22 N -0.165 5.165 23 C -0.090 4.090 24 C -0.318 4.318 25 C -0.154 4.154 26 N -0.168 5.168 27 C -0.121 4.121 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.254 0.746 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.153 0.847 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.147 0.853 41 H 0.104 0.896 42 H 0.226 0.774 43 H 0.185 0.815 44 H 0.215 0.785 45 H 0.081 0.919 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.686 -6.714 -31.182 31.904 hybrid contribution 1.508 -0.884 1.049 2.038 sum 2.194 -7.598 -30.133 31.154 Atomic orbital electron populations 1.22112 0.94237 1.02998 1.02231 1.20942 0.94859 0.95933 0.83325 0.92466 1.45770 1.67428 1.14602 1.08149 1.20047 0.76642 0.86538 0.84690 1.90692 1.50819 1.17885 1.85182 1.23377 1.05503 1.03159 0.96007 1.85602 1.86724 1.17477 1.02909 1.23177 1.50972 0.98497 0.96809 0.89845 1.26143 0.95085 0.97214 1.00786 1.70180 1.46811 1.15530 1.22291 0.85002 0.79097 0.77743 0.76145 1.18638 1.20453 1.18580 1.22975 0.95553 1.01476 0.92424 1.23820 0.97153 1.02711 0.88777 1.68800 1.02911 1.32161 1.14597 1.22780 0.98227 0.94921 0.95439 1.21616 0.92752 0.89925 0.93227 1.48921 1.27601 1.06802 1.33158 1.23256 0.90300 1.02034 0.93447 1.21897 1.08164 0.92282 1.09417 1.24388 0.94013 1.01764 0.95186 1.77321 1.24131 0.90024 1.25321 1.23977 0.94246 0.97437 0.96424 0.89668 0.90538 0.95061 0.74620 0.87174 0.87281 0.92018 0.84723 0.88018 0.92907 0.91268 0.94257 0.85318 0.89624 0.77424 0.81502 0.78500 0.91889 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.47 71.98 0.68 -2.37 16 2 C 0.15 3.19 2.34 44.99 0.11 3.29 16 3 H 0.06 1.57 7.44 -2.38 -0.02 1.55 16 4 N -0.71 -16.66 4.96 -442.54 -2.19 -18.85 16 5 C 0.53 19.38 7.81 87.66 0.68 20.06 16 6 O -0.57 -26.32 15.52 -3.02 -0.05 -26.37 16 7 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 8 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 9 C -0.55 -31.27 9.50 67.95 0.65 -30.63 16 10 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 11 C 0.01 0.71 5.49 84.86 0.47 1.18 16 12 N -0.91 -56.38 13.22 21.65 0.29 -56.09 16 13 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 14 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 15 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 16 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 17 C -0.11 -1.39 3.49 -10.45 -0.04 -1.42 16 18 C 0.00 0.07 7.14 83.58 0.60 0.66 16 19 N -0.46 -6.39 6.33 -927.85 -5.88 -12.26 16 20 C 0.02 0.25 5.00 86.30 0.43 0.69 16 21 C 0.15 1.82 6.84 86.38 0.59 2.41 16 22 N -0.38 -6.45 3.68 -348.04 -1.28 -7.73 16 23 C 0.06 0.69 11.45 83.54 0.96 1.64 16 24 C -0.29 -3.95 10.80 21.99 0.24 -3.71 16 25 C 0.03 0.56 12.03 85.24 1.02 1.59 16 26 N -0.35 -7.77 12.42 -57.02 -0.71 -8.48 16 27 C 0.01 0.11 7.26 83.57 0.61 0.72 16 28 H 0.08 1.27 8.13 -2.39 -0.02 1.25 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.42 6.81 8.60 -92.71 -0.80 6.02 16 32 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 33 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 34 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 35 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.07 7.87 -2.39 -0.02 1.05 16 38 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 39 H 0.04 0.83 7.30 -2.39 -0.02 0.81 16 40 H 0.13 0.92 8.07 -2.38 -0.02 0.91 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.21 0.82 8.06 -2.91 -0.02 0.79 16 43 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.20 2.43 8.06 -2.91 -0.02 2.40 16 45 H 0.06 1.03 7.28 -2.38 -0.02 1.02 16 46 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -82.67 400.55 -1.35 -84.02 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.17 Total: 20.39 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 7.43 Total: -10.51 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -9.77 Total: -103.41 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.05 Total: -26.37 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -82.67 -1.35 -84.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675279301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.259 kcal (2) G-P(sol) polarization free energy of solvation -82.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds