Wall clock time and date at job start Tue Mar 31 2020 21:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46581 * 2 1 4 4 N 1.46495 * 109.46941 * 240.00400 * 2 1 3 5 5 C 1.34778 * 120.00343 * 85.00024 * 4 2 1 6 6 O 1.21276 * 119.99711 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00163 * 179.97438 * 5 4 2 8 8 S 1.80998 * 109.47030 * 179.97438 * 7 5 4 9 9 C 1.76204 * 99.99933 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99837 * 359.97438 * 9 8 7 11 11 C 1.38795 * 120.00086 * 180.02562 * 9 8 7 12 12 N 1.31630 * 119.99902 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00072 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47210 * 59.99529 * 13 11 9 15 15 H 1.48503 * 109.47164 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46774 * 299.99614 * 13 11 9 17 17 C 1.52998 * 109.46946 * 120.00102 * 2 1 3 18 18 C 1.53511 * 114.17339 * 299.99758 * 17 2 1 19 19 N 1.47477 * 87.93308 * 220.33031 * 18 17 2 20 20 C 1.46900 * 110.99924 * 138.70246 * 19 18 17 21 21 C 1.53002 * 109.47330 * 170.00090 * 20 19 18 22 22 N 1.46500 * 109.47148 * 179.97438 * 21 20 19 23 23 C 1.34946 * 126.03644 * 124.95038 * 22 21 20 24 24 C 1.35316 * 107.74870 * 180.02562 * 23 22 21 25 25 C 1.39875 * 107.91722 * 0.02562 * 24 23 22 26 26 N 1.30829 * 108.20298 * 0.02562 * 25 24 23 27 27 C 1.47480 * 87.83489 * 27.01171 * 19 18 17 28 28 H 1.08999 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46803 * 299.99831 * 1 2 3 30 30 H 1.09002 * 109.47316 * 59.99882 * 1 2 3 31 31 H 0.97003 * 120.00060 * 264.99630 * 4 2 1 32 32 H 1.09001 * 109.47174 * 300.00140 * 7 5 4 33 33 H 1.09004 * 109.47081 * 59.99967 * 7 5 4 34 34 H 0.97004 * 119.99829 * 180.02562 * 12 11 9 35 35 H 1.08998 * 113.25929 * 72.95466 * 17 2 1 36 36 H 1.08995 * 113.47314 * 105.56187 * 18 17 2 37 37 H 1.09007 * 113.52952 * 335.10888 * 18 17 2 38 38 H 1.09005 * 109.47022 * 50.00050 * 20 19 18 39 39 H 1.09002 * 109.47294 * 290.00302 * 20 19 18 40 40 H 1.08996 * 109.46833 * 59.99983 * 21 20 19 41 41 H 1.08993 * 109.46978 * 300.00459 * 21 20 19 42 42 H 1.07999 * 126.12479 * 0.04451 * 23 22 21 43 43 H 1.07999 * 126.03957 * 180.26092 * 24 23 22 44 44 H 1.08004 * 125.89587 * 180.02562 * 25 24 23 45 45 H 1.09000 * 113.47785 * 87.76015 * 27 19 18 46 46 H 1.09000 * 113.47815 * 218.21740 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8582 1.1585 -2.4117 7 6 2.6499 -0.7284 -3.5875 8 16 2.7099 0.4345 -4.9732 9 6 3.3131 -0.6307 -6.2406 10 1 3.5233 -1.6669 -6.0204 11 6 3.5191 -0.1378 -7.5217 12 7 3.2634 1.1253 -7.7899 13 14 4.1592 -1.2668 -8.8651 14 1 3.2089 -2.3908 -9.0616 15 1 4.2924 -0.5032 -10.1317 16 1 5.4861 -1.8039 -8.4697 17 6 2.0400 -0.7213 1.2492 18 6 1.5893 -0.0839 2.5711 19 7 2.9423 -0.3453 3.0966 20 6 3.4289 0.7931 3.8873 21 6 4.7135 0.3953 4.6170 22 7 5.1991 1.5308 5.4051 23 6 5.4623 1.5238 6.7287 24 6 5.8876 2.7619 7.0712 25 6 5.8836 3.5528 5.9174 26 7 5.4702 2.8161 4.9184 27 6 3.4347 -0.2733 1.7082 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.2490 -1.6317 -1.1527 32 1 3.6492 -1.1202 -3.3980 33 1 1.9776 -1.5507 -3.8326 34 1 3.4070 1.4696 -8.6853 35 1 1.9067 -1.8022 1.2067 36 1 0.8088 -0.6483 3.0813 37 1 1.3544 0.9770 2.4848 38 1 2.6708 1.0796 4.6163 39 1 3.6328 1.6347 3.2253 40 1 5.4715 0.1088 3.8881 41 1 4.5096 -0.4463 5.2790 42 1 5.3533 0.6810 7.3951 43 1 6.1820 3.0818 8.0598 44 1 6.1719 4.5921 5.8611 45 1 3.6927 0.7370 1.3908 46 1 4.2182 -0.9982 1.4873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675279302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:43 Heat of formation + Delta-G solvation = 78.721881 kcal Electronic energy + Delta-G solvation = -25593.382172 eV Core-core repulsion = 21840.357556 eV Total energy + Delta-G solvation = -3753.024616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48349 -40.83185 -39.04070 -35.59354 -34.26723 -32.42820 -31.69235 -30.62239 -29.85456 -28.50861 -26.98373 -26.01227 -25.48036 -23.81814 -21.93495 -21.38091 -20.80637 -20.42750 -19.82746 -17.85314 -17.65824 -16.77665 -16.46154 -15.90906 -15.81980 -15.39850 -14.93182 -14.80765 -14.73381 -14.50159 -14.09379 -13.91723 -13.54232 -13.43400 -13.15217 -13.12529 -12.99734 -12.78063 -12.63844 -12.46692 -11.96512 -11.77697 -11.75671 -11.17678 -11.05221 -11.04092 -11.01994 -10.91544 -10.81742 -10.74983 -9.82367 -9.78698 -9.49025 -9.35399 -9.06212 -8.95112 -8.86823 -8.23902 -6.49890 -6.21418 -3.92093 1.56094 2.11679 2.53423 3.00891 3.09380 3.23469 3.27274 3.30359 3.52299 3.65605 4.03115 4.17940 4.20703 4.33046 4.36474 4.48306 4.69696 4.82963 4.84336 4.90409 4.97665 5.05330 5.13605 5.17383 5.21023 5.22785 5.25846 5.32587 5.40046 5.44160 5.47217 5.54578 5.67056 5.67488 5.74340 5.79179 5.88929 6.02361 6.13889 6.18932 6.31109 6.49480 6.66414 6.67698 7.37711 7.59289 7.71711 8.35068 8.62062 9.23734 10.85927 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.001793 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.498985 B =15615.023446 C =16506.879514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.087 0.913 4 N -0.733 5.733 5 C 0.533 3.467 6 O -0.518 6.518 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.120 4.120 18 C 0.013 3.987 19 N -0.473 5.473 20 C 0.008 3.992 21 C 0.143 3.857 22 N -0.372 5.372 23 C 0.053 3.947 24 C -0.277 4.277 25 C 0.043 3.957 26 N -0.295 5.295 27 C 0.002 3.998 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.269 0.731 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.173 0.827 43 H 0.147 0.853 44 H 0.183 0.817 45 H 0.077 0.923 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 -4.412 30.684 31.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.049 3.951 3 H 0.105 0.895 4 N -0.387 5.387 5 C 0.319 3.681 6 O -0.392 6.392 7 C -0.304 4.304 8 S 0.166 5.834 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.140 4.140 18 C -0.116 4.116 19 N -0.196 5.196 20 C -0.121 4.121 21 C 0.021 3.979 22 N -0.155 5.155 23 C -0.093 4.093 24 C -0.307 4.307 25 C -0.143 4.143 26 N -0.116 5.116 27 C -0.127 4.127 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.231 0.769 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.190 0.810 43 H 0.164 0.836 44 H 0.200 0.800 45 H 0.095 0.905 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.425 -3.014 29.571 29.728 hybrid contribution 0.975 -1.755 -0.204 2.017 sum 0.549 -4.769 29.368 29.758 Atomic orbital electron populations 1.22159 0.95139 1.02181 1.02635 1.20839 0.94191 0.97068 0.83042 0.89515 1.46052 1.69386 1.13898 1.09388 1.20306 0.76779 0.87213 0.83766 1.90698 1.48311 1.15798 1.84396 1.23536 1.03643 1.04858 0.98400 1.85396 1.86309 1.12910 0.98745 1.22829 1.51079 0.98152 0.96405 0.90988 1.24988 0.95092 0.95536 0.97945 1.70010 1.45458 1.13221 1.21594 0.86228 0.79312 0.80017 0.79962 1.19939 1.20805 1.19950 1.23007 0.96185 1.01324 0.93446 1.23782 0.92995 1.00708 0.94141 1.68767 1.04839 1.36067 1.09890 1.22901 0.96471 0.93888 0.98845 1.21530 0.96219 0.84565 0.95553 1.48757 1.50802 1.09473 1.06462 1.22598 1.00777 1.00035 0.85872 1.21536 1.14886 0.93702 1.00548 1.23938 0.99338 1.00320 0.90693 1.77401 1.21552 0.89350 1.23303 1.24065 0.97981 1.02102 0.88556 0.92403 0.91973 0.91560 0.76852 0.89268 0.89256 0.92130 0.87333 0.89154 0.90706 0.90459 0.91750 0.89630 0.87894 0.80991 0.83567 0.80046 0.90483 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.29 37.16 0.35 -1.33 16 2 C 0.15 1.67 2.47 -67.93 -0.17 1.50 16 3 H 0.09 1.15 7.33 -51.93 -0.38 0.76 16 4 N -0.73 -9.21 5.08 -53.81 -0.27 -9.49 16 5 C 0.53 9.68 7.81 -10.98 -0.09 9.59 16 6 O -0.52 -11.55 15.52 5.56 0.09 -11.46 16 7 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 8 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 9 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 10 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 11 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 12 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 13 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 17 C -0.12 -0.94 3.64 -90.09 -0.33 -1.27 16 18 C 0.01 0.09 6.33 -7.55 -0.05 0.05 16 19 N -0.47 -3.61 6.33 -244.64 -1.55 -5.16 16 20 C 0.01 0.07 5.00 -3.82 -0.02 0.05 16 21 C 0.14 1.02 6.84 -4.04 -0.03 0.99 16 22 N -0.37 -3.31 3.68 -61.37 -0.23 -3.54 16 23 C 0.05 0.38 11.45 -17.22 -0.20 0.18 16 24 C -0.28 -2.04 10.80 -40.01 -0.43 -2.47 16 25 C 0.04 0.38 12.03 -17.37 -0.21 0.17 16 26 N -0.29 -3.27 12.42 30.63 0.38 -2.89 16 27 C 0.00 0.01 7.28 -7.55 -0.05 -0.04 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.53 7.48 -51.93 -0.39 0.14 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.40 3.86 8.60 -40.82 -0.35 3.51 16 32 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 33 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 34 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.56 7.87 -51.92 -0.41 0.15 16 38 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.06 0.62 7.30 -51.93 -0.38 0.25 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.52 8.07 -51.93 -0.42 0.10 16 42 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.18 1.09 8.06 -52.48 -0.42 0.67 16 45 H 0.08 0.75 7.21 -51.93 -0.37 0.38 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 399.16 15.07 6.02 6.02 Total: -1.00 -36.02 399.16 -10.19 -46.20 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.32 Total: 1.65 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -0.80 Total: -8.40 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.93 Total: -46.55 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.02 -10.19 -46.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675279302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.926 kcal (2) G-P(sol) polarization free energy of solvation -36.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds