Wall clock time and date at job start Tue Mar 31 2020 21:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46581 * 2 1 4 4 N 1.46495 * 109.46941 * 240.00400 * 2 1 3 5 5 C 1.34778 * 120.00343 * 85.00024 * 4 2 1 6 6 O 1.21276 * 119.99711 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00163 * 179.97438 * 5 4 2 8 8 S 1.80998 * 109.47030 * 179.97438 * 7 5 4 9 9 C 1.76204 * 99.99933 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99837 * 359.97438 * 9 8 7 11 11 C 1.38795 * 120.00086 * 180.02562 * 9 8 7 12 12 N 1.31630 * 119.99902 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00072 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47210 * 59.99529 * 13 11 9 15 15 H 1.48503 * 109.47164 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46774 * 299.99614 * 13 11 9 17 17 C 1.52998 * 109.46946 * 120.00102 * 2 1 3 18 18 C 1.53511 * 114.17339 * 299.99758 * 17 2 1 19 19 N 1.47477 * 87.93308 * 220.33031 * 18 17 2 20 20 C 1.46900 * 110.99924 * 138.70246 * 19 18 17 21 21 C 1.53002 * 109.47330 * 170.00090 * 20 19 18 22 22 N 1.46500 * 109.47148 * 179.97438 * 21 20 19 23 23 C 1.34946 * 126.03644 * 124.95038 * 22 21 20 24 24 C 1.35316 * 107.74870 * 180.02562 * 23 22 21 25 25 C 1.39875 * 107.91722 * 0.02562 * 24 23 22 26 26 N 1.30829 * 108.20298 * 0.02562 * 25 24 23 27 27 C 1.47480 * 87.83489 * 27.01171 * 19 18 17 28 28 H 1.08999 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46803 * 299.99831 * 1 2 3 30 30 H 1.09002 * 109.47316 * 59.99882 * 1 2 3 31 31 H 0.97003 * 120.00060 * 264.99630 * 4 2 1 32 32 H 1.09001 * 109.47174 * 300.00140 * 7 5 4 33 33 H 1.09004 * 109.47081 * 59.99967 * 7 5 4 34 34 H 0.97004 * 119.99829 * 180.02562 * 12 11 9 35 35 H 1.08998 * 113.25929 * 72.95466 * 17 2 1 36 36 H 1.08995 * 113.47314 * 105.56187 * 18 17 2 37 37 H 1.09007 * 113.52952 * 335.10888 * 18 17 2 38 38 H 1.09005 * 109.47022 * 50.00050 * 20 19 18 39 39 H 1.09002 * 109.47294 * 290.00302 * 20 19 18 40 40 H 1.08996 * 109.46833 * 59.99983 * 21 20 19 41 41 H 1.08993 * 109.46978 * 300.00459 * 21 20 19 42 42 H 1.07999 * 126.12479 * 0.04451 * 23 22 21 43 43 H 1.07999 * 126.03957 * 180.26092 * 24 23 22 44 44 H 1.08004 * 125.89587 * 180.02562 * 25 24 23 45 45 H 1.09000 * 113.47785 * 87.76015 * 27 19 18 46 46 H 1.09000 * 113.47815 * 218.21740 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8582 1.1585 -2.4117 7 6 2.6499 -0.7284 -3.5875 8 16 2.7099 0.4345 -4.9732 9 6 3.3131 -0.6307 -6.2406 10 1 3.5233 -1.6669 -6.0204 11 6 3.5191 -0.1378 -7.5217 12 7 3.2634 1.1253 -7.7899 13 14 4.1592 -1.2668 -8.8651 14 1 3.2089 -2.3908 -9.0616 15 1 4.2924 -0.5032 -10.1317 16 1 5.4861 -1.8039 -8.4697 17 6 2.0400 -0.7213 1.2492 18 6 1.5893 -0.0839 2.5711 19 7 2.9423 -0.3453 3.0966 20 6 3.4289 0.7931 3.8873 21 6 4.7135 0.3953 4.6170 22 7 5.1991 1.5308 5.4051 23 6 5.4623 1.5238 6.7287 24 6 5.8876 2.7619 7.0712 25 6 5.8836 3.5528 5.9174 26 7 5.4702 2.8161 4.9184 27 6 3.4347 -0.2733 1.7082 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.2490 -1.6317 -1.1527 32 1 3.6492 -1.1202 -3.3980 33 1 1.9776 -1.5507 -3.8326 34 1 3.4070 1.4696 -8.6853 35 1 1.9067 -1.8022 1.2067 36 1 0.8088 -0.6483 3.0813 37 1 1.3544 0.9770 2.4848 38 1 2.6708 1.0796 4.6163 39 1 3.6328 1.6347 3.2253 40 1 5.4715 0.1088 3.8881 41 1 4.5096 -0.4463 5.2790 42 1 5.3533 0.6810 7.3951 43 1 6.1820 3.0818 8.0598 44 1 6.1719 4.5921 5.8611 45 1 3.6927 0.7370 1.3908 46 1 4.2182 -0.9982 1.4873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675279302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:42 Heat of formation + Delta-G solvation = 51.474671 kcal Electronic energy + Delta-G solvation = -25594.563700 eV Core-core repulsion = 21840.357556 eV Total energy + Delta-G solvation = -3754.206143 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08136 -41.58317 -40.35933 -36.62063 -35.03401 -34.58655 -32.79320 -31.35408 -30.60965 -29.81089 -27.71303 -27.59556 -26.65510 -24.60429 -22.78081 -21.94758 -21.67396 -21.34190 -20.76842 -19.75193 -18.23527 -17.85654 -17.73772 -16.88173 -16.67129 -16.57585 -16.41224 -16.02628 -15.95071 -15.46022 -15.14271 -14.69231 -14.62742 -14.52008 -14.31121 -14.07717 -13.79788 -13.68744 -13.61630 -13.30852 -13.17471 -13.10423 -12.86849 -12.72792 -12.59297 -12.40712 -11.90798 -11.84638 -11.72930 -11.54276 -11.49194 -11.13129 -10.90341 -10.43072 -10.27915 -10.25257 -9.94927 -9.52227 -8.67024 -8.34718 -6.13011 0.98520 1.26811 1.43620 1.46705 1.56081 1.58045 1.63267 1.95470 2.24827 2.29145 2.87736 2.99300 3.26380 3.35648 3.60613 3.64865 3.72017 3.95084 4.05542 4.11998 4.16496 4.21388 4.28402 4.29338 4.34121 4.37059 4.44090 4.50109 4.51411 4.63400 4.69864 4.76020 4.80300 4.85116 4.90606 4.95838 5.14141 5.16412 5.17315 5.31145 5.41219 5.55522 5.72878 5.85294 6.16260 6.19305 6.54329 6.77179 7.06359 7.28196 8.74223 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.001793 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.498985 B =15615.023446 C =16506.879514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.058 0.942 4 N -0.706 5.706 5 C 0.535 3.465 6 O -0.568 6.568 7 C -0.129 4.129 8 S -0.154 6.154 9 C -0.547 4.547 10 H 0.083 0.917 11 C 0.013 3.987 12 N -0.912 5.912 13 Si 0.999 3.001 14 H -0.261 1.261 15 H -0.279 1.279 16 H -0.262 1.262 17 C -0.105 4.105 18 C 0.015 3.985 19 N -0.464 5.464 20 C 0.017 3.983 21 C 0.144 3.856 22 N -0.381 5.381 23 C 0.056 3.944 24 C -0.288 4.288 25 C 0.032 3.968 26 N -0.347 5.347 27 C -0.002 4.002 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.030 0.970 31 H 0.417 0.583 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.271 0.729 35 H 0.133 0.867 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.130 0.870 42 H 0.210 0.790 43 H 0.168 0.832 44 H 0.198 0.802 45 H 0.055 0.945 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.352 -7.766 32.803 33.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.076 0.924 4 N -0.360 5.360 5 C 0.321 3.679 6 O -0.446 6.446 7 C -0.281 4.281 8 S 0.073 5.927 9 C -0.695 4.695 10 H 0.102 0.898 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.186 1.186 15 H -0.204 1.204 16 H -0.187 1.187 17 C -0.125 4.125 18 C -0.114 4.114 19 N -0.186 5.186 20 C -0.113 4.113 21 C 0.023 3.977 22 N -0.165 5.165 23 C -0.090 4.090 24 C -0.317 4.317 25 C -0.153 4.153 26 N -0.170 5.170 27 C -0.131 4.131 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.050 0.950 31 H 0.254 0.746 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.151 0.849 36 H 0.129 0.871 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.148 0.852 42 H 0.226 0.774 43 H 0.186 0.814 44 H 0.215 0.785 45 H 0.073 0.927 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.289 -6.414 31.742 32.385 hybrid contribution 0.914 -0.711 -0.688 1.347 sum 0.624 -7.125 31.054 31.868 Atomic orbital electron populations 1.22111 0.94248 1.03258 1.01972 1.20948 0.94810 0.95987 0.83341 0.92413 1.45800 1.67426 1.14601 1.08163 1.20049 0.76640 0.86540 0.84707 1.90690 1.50805 1.17894 1.85202 1.23379 1.05517 1.03162 0.96008 1.85596 1.86723 1.17483 1.02902 1.23180 1.50968 0.98505 0.96832 0.89849 1.26139 0.95074 0.97204 1.00777 1.70184 1.46813 1.15525 1.22286 0.85003 0.79088 0.77750 0.76151 1.18559 1.20443 1.18670 1.22946 0.95488 1.02151 0.91868 1.23827 0.93303 1.00643 0.93646 1.68795 1.05005 1.35615 1.09204 1.22775 0.97039 0.93077 0.98361 1.21611 0.95327 0.84856 0.95939 1.48907 1.51120 1.09102 1.07333 1.23264 0.99188 1.01089 0.85438 1.21897 1.14959 0.93757 1.01069 1.24393 0.98679 1.01225 0.91032 1.77340 1.23661 0.90907 1.25056 1.24036 0.98628 1.01160 0.89275 0.90350 0.89901 0.95033 0.74580 0.87273 0.87165 0.92021 0.84946 0.87072 0.91395 0.90279 0.94415 0.90478 0.85159 0.77361 0.81424 0.78510 0.92658 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.29 71.98 0.67 -2.38 16 2 C 0.15 3.19 2.47 44.99 0.11 3.30 16 3 H 0.06 1.58 7.33 -2.39 -0.02 1.57 16 4 N -0.71 -16.76 5.08 -442.54 -2.25 -19.01 16 5 C 0.53 19.45 7.81 87.66 0.68 20.14 16 6 O -0.57 -26.39 15.52 -3.02 -0.05 -26.44 16 7 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 8 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 9 C -0.55 -31.35 9.50 67.95 0.65 -30.71 16 10 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 11 C 0.01 0.73 5.49 84.86 0.47 1.20 16 12 N -0.91 -56.44 13.22 21.65 0.29 -56.15 16 13 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 14 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 17 C -0.11 -1.40 3.64 -10.45 -0.04 -1.44 16 18 C 0.01 0.18 6.33 83.57 0.53 0.71 16 19 N -0.46 -6.24 6.33 -927.91 -5.88 -12.11 16 20 C 0.02 0.26 5.00 86.30 0.43 0.69 16 21 C 0.14 1.89 6.84 86.38 0.59 2.48 16 22 N -0.38 -6.51 3.68 -348.07 -1.28 -7.79 16 23 C 0.06 0.68 11.45 83.54 0.96 1.64 16 24 C -0.29 -3.84 10.80 21.99 0.24 -3.60 16 25 C 0.03 0.56 12.03 85.24 1.03 1.59 16 26 N -0.35 -7.91 12.42 -57.02 -0.71 -8.62 16 27 C 0.00 -0.03 7.28 83.57 0.61 0.58 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.26 7.48 -2.39 -0.02 1.24 16 30 H 0.03 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.42 6.82 8.60 -92.71 -0.80 6.03 16 32 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 33 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 34 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.11 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.95 7.87 -2.38 -0.02 0.93 16 38 H 0.08 1.16 8.08 -2.38 -0.02 1.14 16 39 H 0.04 0.78 7.30 -2.39 -0.02 0.76 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.13 0.96 8.07 -2.39 -0.02 0.94 16 42 H 0.21 0.74 8.06 -2.91 -0.02 0.71 16 43 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 44 H 0.20 2.41 8.06 -2.91 -0.02 2.39 16 45 H 0.06 1.13 7.21 -2.39 -0.02 1.11 16 46 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -82.94 399.16 -1.48 -84.41 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.18 Total: 20.23 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 7.36 Total: -10.46 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -9.83 Total: -103.68 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.05 Total: -26.44 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -82.94 -1.48 -84.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675279302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.888 kcal (2) G-P(sol) polarization free energy of solvation -82.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds