Wall clock time and date at job start Tue Mar 31 2020 21:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46979 * 2 1 4 4 C 1.50706 * 109.47016 * 119.99866 * 2 1 3 5 5 O 1.21278 * 119.99561 * 120.00332 * 4 2 1 6 6 N 1.34768 * 119.99924 * 300.00224 * 4 2 1 7 7 C 1.46500 * 119.99743 * 180.02562 * 6 4 2 8 8 H 1.09000 * 109.47659 * 34.99804 * 7 6 4 9 9 C 1.53001 * 109.46866 * 274.99573 * 7 6 4 10 10 C 1.53000 * 109.47093 * 154.99920 * 7 6 4 11 11 C 1.53491 * 114.20581 * 295.13283 * 10 7 6 12 12 N 1.47068 * 87.98931 * 220.34690 * 11 10 7 13 13 C 1.36939 * 136.05910 * 207.08893 * 12 11 10 14 14 H 1.07998 * 120.00182 * 7.79505 * 13 12 11 15 15 C 1.38813 * 119.99786 * 187.79929 * 13 12 11 16 16 N 1.31608 * 120.00140 * 195.16163 * 15 13 12 17 17 Si 1.86812 * 119.99954 * 15.16386 * 15 13 12 18 18 H 1.48506 * 109.46670 * 269.99763 * 17 15 13 19 19 H 1.48495 * 109.47049 * 29.99831 * 17 15 13 20 20 H 1.48501 * 109.46667 * 149.99950 * 17 15 13 21 21 C 1.47064 * 87.88132 * 27.34445 * 12 11 10 22 22 C 1.50696 * 109.47123 * 239.99958 * 2 1 3 23 23 C 1.38256 * 119.96750 * 299.72643 * 22 2 1 24 24 C 1.38213 * 120.07320 * 179.72281 * 23 22 2 25 25 C 1.38411 * 119.99599 * 0.55337 * 24 23 22 26 26 F 1.35099 * 120.03490 * 179.74754 * 25 24 23 27 27 C 1.38650 * 119.93203 * 359.71949 * 25 24 23 28 28 F 1.35101 * 120.03724 * 180.02562 * 27 25 24 29 29 C 1.38216 * 119.96099 * 120.00071 * 22 2 1 30 30 H 1.08996 * 109.46940 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47099 * 300.00063 * 1 2 3 32 32 H 1.08996 * 109.47065 * 59.99811 * 1 2 3 33 33 H 0.96998 * 120.00911 * 359.97438 * 6 4 2 34 34 H 1.09001 * 109.47388 * 304.84112 * 9 7 6 35 35 H 1.08999 * 109.47241 * 64.84153 * 9 7 6 36 36 H 1.09000 * 109.47347 * 184.83771 * 9 7 6 37 37 H 1.09004 * 113.41670 * 68.34300 * 10 7 6 38 38 H 1.09006 * 113.46406 * 105.56897 * 11 10 7 39 39 H 1.09000 * 113.52637 * 335.13768 * 11 10 7 40 40 H 0.97007 * 120.00249 * 354.93543 * 16 15 13 41 41 H 1.08997 * 113.47035 * 87.43951 * 21 12 11 42 42 H 1.09006 * 113.46815 * 217.87607 * 21 12 11 43 43 H 1.08005 * 119.96118 * 0.02562 * 23 22 2 44 44 H 1.07999 * 120.00247 * 180.27210 * 24 23 22 45 45 H 1.08001 * 120.00378 * 0.02562 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6964 1.1192 6 7 1.7068 -0.2500 2.4545 7 6 2.1955 -0.9402 3.6507 8 1 3.1949 -1.3321 3.4613 9 6 1.2519 -2.0944 3.9948 10 6 2.2468 0.0430 4.8218 11 6 3.2547 1.1863 4.6400 12 7 3.6054 1.0335 6.0601 13 6 4.0975 1.8453 7.0471 14 1 4.2002 2.9061 6.8726 15 6 4.4643 1.3046 8.2718 16 7 4.6501 2.0923 9.3097 17 14 4.6942 -0.5410 8.4468 18 1 3.4048 -1.1655 8.8379 19 1 5.1464 -1.1085 7.1513 20 1 5.7141 -0.8159 9.4907 21 6 3.2013 -0.3764 5.9520 22 6 2.0324 -0.7104 -1.2304 23 6 1.7026 -2.0357 -1.4457 24 6 2.1574 -2.6877 -2.5763 25 6 2.9533 -2.0171 -3.4888 26 9 3.4025 -2.6552 -4.5916 27 6 3.2887 -0.6897 -3.2701 28 9 4.0651 -0.0330 -4.1596 29 6 2.8270 -0.0379 -2.1397 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.1494 0.5389 2.5436 34 1 0.2359 -1.7141 4.0999 35 1 1.2811 -2.8375 3.1979 36 1 1.5666 -2.5540 4.9317 37 1 1.2620 0.3649 5.1606 38 1 2.7879 2.1438 4.4088 39 1 4.0725 0.9417 3.9622 40 1 4.6030 3.0552 9.2025 41 1 4.0046 -1.0340 5.6200 42 1 2.6890 -0.7503 6.8385 43 1 1.0849 -2.5606 -0.7320 44 1 1.8955 -3.7217 -2.7455 45 1 3.0879 0.9959 -1.9680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675362893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:52 Heat of formation + Delta-G solvation = -48.419482 kcal Electronic energy + Delta-G solvation = -28881.176570 eV Core-core repulsion = 24536.505553 eV Total energy + Delta-G solvation = -4344.671017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.73888 -48.81627 -40.67848 -39.30010 -38.35200 -35.09486 -34.43975 -32.41806 -31.29136 -30.79747 -29.24056 -27.85580 -25.45877 -25.08777 -23.99602 -23.63516 -22.50074 -20.92504 -20.29971 -19.49188 -18.27894 -17.76562 -17.54266 -17.36081 -16.70177 -16.53788 -16.29171 -15.45694 -15.23415 -15.22399 -14.92598 -14.78262 -14.40138 -14.26641 -14.04513 -13.66001 -13.46781 -13.37214 -13.24919 -13.06881 -12.78574 -12.38923 -12.27972 -12.03653 -11.99728 -11.86180 -11.80246 -11.44329 -11.24095 -11.12853 -10.76876 -10.39062 -10.06722 -9.91889 -9.50996 -9.37722 -9.21348 -9.08645 -8.94511 -8.71843 -7.21358 -6.33382 -3.25752 0.54977 0.66959 2.50677 2.84065 3.20637 3.38940 3.45954 3.47405 3.61262 3.93774 4.05799 4.19158 4.49153 4.56941 4.61882 4.64899 4.69498 4.74277 4.83204 4.93810 5.05087 5.17777 5.30472 5.36964 5.39885 5.40850 5.44223 5.50617 5.54525 5.63286 5.70578 5.71906 5.82170 5.99071 6.00840 6.12495 6.21048 6.21580 6.29736 6.36005 6.39460 6.51381 6.88433 7.09808 7.42996 8.12152 8.20834 8.94294 9.47852 10.34244 11.16424 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020410 B = 0.002263 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.568254 B =12367.310920 C =12586.936373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 H 0.111 0.889 4 C 0.517 3.483 5 O -0.533 6.533 6 N -0.716 5.716 7 C 0.152 3.848 8 H 0.089 0.911 9 C -0.159 4.159 10 C -0.141 4.141 11 C 0.126 3.874 12 N -0.624 5.624 13 C -0.306 4.306 14 H 0.081 0.919 15 C -0.024 4.024 16 N -0.931 5.931 17 Si 1.061 2.939 18 H -0.292 1.292 19 H -0.281 1.281 20 H -0.295 1.295 21 C 0.114 3.886 22 C -0.046 4.046 23 C -0.064 4.064 24 C -0.126 4.126 25 C 0.066 3.934 26 F -0.131 7.131 27 C 0.065 3.935 28 F -0.130 7.130 29 C -0.117 4.117 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.400 0.600 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.042 0.958 39 H 0.034 0.966 40 H 0.261 0.739 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.138 0.862 44 H 0.146 0.854 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.049 -7.220 -24.914 28.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 H 0.129 0.871 4 C 0.302 3.698 5 O -0.409 6.409 6 N -0.366 5.366 7 C 0.047 3.953 8 H 0.107 0.893 9 C -0.217 4.217 10 C -0.161 4.161 11 C -0.001 4.001 12 N -0.352 5.352 13 C -0.433 4.433 14 H 0.099 0.901 15 C -0.223 4.223 16 N -0.573 5.573 17 Si 0.892 3.108 18 H -0.220 1.220 19 H -0.207 1.207 20 H -0.222 1.222 21 C -0.013 4.013 22 C -0.047 4.047 23 C -0.082 4.082 24 C -0.145 4.145 25 C 0.046 3.954 26 F -0.109 7.109 27 C 0.045 3.955 28 F -0.109 7.109 29 C -0.136 4.136 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.234 0.766 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.156 0.844 44 H 0.164 0.836 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.038 -8.947 -23.756 27.681 hybrid contribution -0.082 1.688 -1.428 2.212 sum -11.120 -7.260 -25.183 28.470 Atomic orbital electron populations 1.21820 0.91400 1.03346 1.03380 1.20336 0.98114 1.00647 0.90454 0.87139 1.20291 0.80341 0.84748 0.84405 1.90736 1.37422 1.26181 1.86572 1.46053 1.53340 1.31891 1.05361 1.21022 0.98723 0.92304 0.83238 0.89277 1.22124 0.99447 0.98142 1.02024 1.23565 0.99774 0.97340 0.95376 1.22328 0.93992 0.95662 0.88096 1.46199 1.77211 1.06189 1.05591 1.20128 1.41132 0.90177 0.91815 0.90109 1.25791 0.98398 1.07072 0.91040 1.70902 1.52658 1.05063 1.28690 0.83793 0.76586 0.75126 0.75265 1.22004 1.20740 1.22212 1.22639 0.94090 0.89146 0.95390 1.19207 0.96813 0.94123 0.94560 1.20872 0.98356 0.93479 0.95508 1.21059 0.98282 1.01242 0.93925 1.17716 1.00907 0.90029 0.86785 1.91525 1.87547 1.81420 1.50452 1.17571 0.97299 0.89803 0.90877 1.91532 1.72311 1.80495 1.66513 1.20941 0.98552 1.01400 0.92714 0.91600 0.91123 0.91006 0.76569 0.92524 0.92499 0.91279 0.88316 0.93920 0.94841 0.92862 0.93612 0.92846 0.84375 0.83639 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.91 37.16 0.33 -0.35 16 2 C -0.07 -0.52 2.90 -92.92 -0.27 -0.79 16 3 H 0.11 0.61 7.87 -51.93 -0.41 0.20 16 4 C 0.52 5.42 6.98 -10.99 -0.08 5.34 16 5 O -0.53 -7.63 14.75 5.56 0.08 -7.54 16 6 N -0.72 -7.08 4.85 -53.81 -0.26 -7.34 16 7 C 0.15 1.92 2.34 -67.93 -0.16 1.76 16 8 H 0.09 1.34 7.42 -51.93 -0.39 0.95 16 9 C -0.16 -1.77 9.48 37.16 0.35 -1.42 16 10 C -0.14 -2.14 3.52 -89.97 -0.32 -2.46 16 11 C 0.13 2.32 8.13 -8.52 -0.07 2.25 16 12 N -0.62 -14.98 3.62 -184.61 -0.67 -15.65 16 13 C -0.31 -8.74 11.03 -15.06 -0.17 -8.91 16 14 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 15 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 16 N -0.93 -29.24 13.70 55.49 0.76 -28.48 16 17 Si 1.06 26.39 25.50 -169.99 -4.34 22.05 16 18 H -0.29 -6.90 6.97 56.52 0.39 -6.50 16 19 H -0.28 -6.52 5.66 56.52 0.32 -6.20 16 20 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 21 C 0.11 2.28 5.17 -8.38 -0.04 2.24 16 22 C -0.05 -0.39 4.40 -104.63 -0.46 -0.85 16 23 C -0.06 -0.54 7.92 -39.58 -0.31 -0.85 16 24 C -0.13 -1.07 10.02 -39.53 -0.40 -1.47 16 25 C 0.07 0.67 7.31 -39.37 -0.29 0.38 16 26 F -0.13 -1.46 17.18 2.25 0.04 -1.42 16 27 C 0.06 0.66 7.31 -39.36 -0.29 0.38 16 28 F -0.13 -1.47 17.18 2.25 0.04 -1.43 16 29 C -0.12 -1.02 9.65 -39.52 -0.38 -1.40 16 30 H 0.06 0.33 7.40 -51.93 -0.38 -0.06 16 31 H 0.07 0.27 7.57 -51.93 -0.39 -0.12 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.40 3.01 8.02 -40.82 -0.33 2.68 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.26 8.09 8.73 -40.82 -0.36 7.73 16 41 H 0.05 0.92 6.87 -51.93 -0.36 0.57 16 42 H 0.05 1.10 6.22 -51.93 -0.32 0.78 16 43 H 0.14 1.04 7.51 -52.48 -0.39 0.65 16 44 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.15 0.97 7.94 -52.49 -0.42 0.55 16 LS Contribution 375.72 15.07 5.66 5.66 Total: -1.00 -34.56 375.72 -7.76 -42.32 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.43 Total: -1.21 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.64 Total: -6.95 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.17 Total: -51.47 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: 0.08 Total: -7.54 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.08 Total: -2.85 kcal Atomic # 14 Polarization: 26.39 SS G_CDS: -4.34 Total: 22.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.56 -7.76 -42.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675362893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.104 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds