Wall clock time and date at job start Tue Mar 31 2020 21:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46979 * 2 1 4 4 C 1.50706 * 109.47016 * 119.99866 * 2 1 3 5 5 O 1.21278 * 119.99561 * 120.00332 * 4 2 1 6 6 N 1.34768 * 119.99924 * 300.00224 * 4 2 1 7 7 C 1.46500 * 119.99743 * 180.02562 * 6 4 2 8 8 H 1.09000 * 109.47659 * 34.99804 * 7 6 4 9 9 C 1.53001 * 109.46866 * 274.99573 * 7 6 4 10 10 C 1.53000 * 109.47093 * 154.99920 * 7 6 4 11 11 C 1.53491 * 114.20581 * 295.13283 * 10 7 6 12 12 N 1.47068 * 87.98931 * 220.34690 * 11 10 7 13 13 C 1.36939 * 136.05910 * 207.08893 * 12 11 10 14 14 H 1.07998 * 120.00182 * 7.79505 * 13 12 11 15 15 C 1.38813 * 119.99786 * 187.79929 * 13 12 11 16 16 N 1.31608 * 120.00140 * 195.16163 * 15 13 12 17 17 Si 1.86812 * 119.99954 * 15.16386 * 15 13 12 18 18 H 1.48506 * 109.46670 * 269.99763 * 17 15 13 19 19 H 1.48495 * 109.47049 * 29.99831 * 17 15 13 20 20 H 1.48501 * 109.46667 * 149.99950 * 17 15 13 21 21 C 1.47064 * 87.88132 * 27.34445 * 12 11 10 22 22 C 1.50696 * 109.47123 * 239.99958 * 2 1 3 23 23 C 1.38256 * 119.96750 * 299.72643 * 22 2 1 24 24 C 1.38213 * 120.07320 * 179.72281 * 23 22 2 25 25 C 1.38411 * 119.99599 * 0.55337 * 24 23 22 26 26 F 1.35099 * 120.03490 * 179.74754 * 25 24 23 27 27 C 1.38650 * 119.93203 * 359.71949 * 25 24 23 28 28 F 1.35101 * 120.03724 * 180.02562 * 27 25 24 29 29 C 1.38216 * 119.96099 * 120.00071 * 22 2 1 30 30 H 1.08996 * 109.46940 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47099 * 300.00063 * 1 2 3 32 32 H 1.08996 * 109.47065 * 59.99811 * 1 2 3 33 33 H 0.96998 * 120.00911 * 359.97438 * 6 4 2 34 34 H 1.09001 * 109.47388 * 304.84112 * 9 7 6 35 35 H 1.08999 * 109.47241 * 64.84153 * 9 7 6 36 36 H 1.09000 * 109.47347 * 184.83771 * 9 7 6 37 37 H 1.09004 * 113.41670 * 68.34300 * 10 7 6 38 38 H 1.09006 * 113.46406 * 105.56897 * 11 10 7 39 39 H 1.09000 * 113.52637 * 335.13768 * 11 10 7 40 40 H 0.97007 * 120.00249 * 354.93543 * 16 15 13 41 41 H 1.08997 * 113.47035 * 87.43951 * 21 12 11 42 42 H 1.09006 * 113.46815 * 217.87607 * 21 12 11 43 43 H 1.08005 * 119.96118 * 0.02562 * 23 22 2 44 44 H 1.07999 * 120.00247 * 180.27210 * 24 23 22 45 45 H 1.08001 * 120.00378 * 0.02562 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7297 -1.6964 1.1192 6 7 1.7068 -0.2500 2.4545 7 6 2.1955 -0.9402 3.6507 8 1 3.1949 -1.3321 3.4613 9 6 1.2519 -2.0944 3.9948 10 6 2.2468 0.0430 4.8218 11 6 3.2547 1.1863 4.6400 12 7 3.6054 1.0335 6.0601 13 6 4.0975 1.8453 7.0471 14 1 4.2002 2.9061 6.8726 15 6 4.4643 1.3046 8.2718 16 7 4.6501 2.0923 9.3097 17 14 4.6942 -0.5410 8.4468 18 1 3.4048 -1.1655 8.8379 19 1 5.1464 -1.1085 7.1513 20 1 5.7141 -0.8159 9.4907 21 6 3.2013 -0.3764 5.9520 22 6 2.0324 -0.7104 -1.2304 23 6 1.7026 -2.0357 -1.4457 24 6 2.1574 -2.6877 -2.5763 25 6 2.9533 -2.0171 -3.4888 26 9 3.4025 -2.6552 -4.5916 27 6 3.2887 -0.6897 -3.2701 28 9 4.0651 -0.0330 -4.1596 29 6 2.8270 -0.0379 -2.1397 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.1494 0.5389 2.5436 34 1 0.2359 -1.7141 4.0999 35 1 1.2811 -2.8375 3.1979 36 1 1.5666 -2.5540 4.9317 37 1 1.2620 0.3649 5.1606 38 1 2.7879 2.1438 4.4088 39 1 4.0725 0.9417 3.9622 40 1 4.6030 3.0552 9.2025 41 1 4.0046 -1.0340 5.6200 42 1 2.6890 -0.7503 6.8385 43 1 1.0849 -2.5606 -0.7320 44 1 1.8955 -3.7217 -2.7455 45 1 3.0879 0.9959 -1.9680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675362893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:51 Heat of formation + Delta-G solvation = -70.752103 kcal Electronic energy + Delta-G solvation = -28882.144985 eV Core-core repulsion = 24536.505553 eV Total energy + Delta-G solvation = -4345.639432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.53110 -49.61751 -41.50144 -40.45506 -39.38881 -36.22649 -35.09146 -34.45104 -32.00994 -31.79133 -29.92230 -29.50329 -26.87389 -25.88968 -25.29151 -24.29941 -23.51088 -22.19632 -21.30988 -20.79710 -19.52193 -19.02614 -18.53942 -18.14533 -17.52005 -17.36269 -17.21739 -16.91534 -16.17937 -16.04766 -15.86373 -15.77220 -15.54631 -15.41705 -15.22708 -14.97287 -14.66575 -14.45003 -14.06519 -13.79369 -13.62359 -13.38434 -13.25810 -13.10814 -13.02638 -12.89305 -12.60503 -12.57640 -12.44063 -12.32673 -11.99313 -11.80027 -11.66456 -11.48791 -11.03743 -10.86205 -10.66117 -10.06395 -9.98153 -9.65902 -9.23785 -8.61708 -5.46348 -0.15063 0.01007 1.39352 1.51812 1.65857 1.72412 2.08143 2.47495 2.53229 2.77306 3.03451 3.16424 3.25659 3.40509 3.51621 3.60299 3.86545 3.91432 4.05648 4.11283 4.22126 4.26759 4.29371 4.35077 4.54299 4.64867 4.67839 4.70746 4.78429 4.79163 4.83183 4.84138 4.92581 4.94605 4.99048 5.05643 5.12037 5.22602 5.32499 5.35659 5.40815 5.50086 5.60897 5.72183 5.96255 6.66777 6.70437 7.34080 7.35181 8.29185 8.89580 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020410 B = 0.002263 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.568254 B =12367.310920 C =12586.936373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 H 0.132 0.868 4 C 0.517 3.483 5 O -0.573 6.573 6 N -0.707 5.707 7 C 0.162 3.838 8 H 0.066 0.934 9 C -0.154 4.154 10 C -0.101 4.101 11 C 0.124 3.876 12 N -0.659 5.659 13 C -0.292 4.292 14 H 0.049 0.951 15 C -0.085 4.085 16 N -0.969 5.969 17 Si 1.099 2.901 18 H -0.270 1.270 19 H -0.258 1.258 20 H -0.305 1.305 21 C 0.102 3.898 22 C -0.050 4.050 23 C -0.066 4.066 24 C -0.124 4.124 25 C 0.046 3.954 26 F -0.142 7.142 27 C 0.044 3.956 28 F -0.142 7.142 29 C -0.116 4.116 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.415 0.585 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.118 0.882 38 H 0.054 0.946 39 H 0.036 0.964 40 H 0.247 0.753 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.149 0.851 44 H 0.165 0.835 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.341 -8.300 -26.209 31.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 H 0.150 0.850 4 C 0.304 3.696 5 O -0.452 6.452 6 N -0.358 5.358 7 C 0.056 3.944 8 H 0.084 0.916 9 C -0.212 4.212 10 C -0.121 4.121 11 C -0.001 4.001 12 N -0.387 5.387 13 C -0.420 4.420 14 H 0.067 0.933 15 C -0.277 4.277 16 N -0.614 5.614 17 Si 0.925 3.075 18 H -0.196 1.196 19 H -0.183 1.183 20 H -0.233 1.233 21 C -0.024 4.024 22 C -0.050 4.050 23 C -0.084 4.084 24 C -0.143 4.143 25 C 0.026 3.974 26 F -0.121 7.121 27 C 0.024 3.976 28 F -0.120 7.120 29 C -0.135 4.135 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.252 0.748 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.167 0.833 44 H 0.182 0.818 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.381 -10.011 -25.115 30.167 hybrid contribution 0.617 2.092 -1.119 2.451 sum -12.764 -7.919 -26.234 30.230 Atomic orbital electron populations 1.21859 0.89250 1.03779 1.04815 1.20371 0.99702 1.00866 0.87756 0.84996 1.20827 0.79400 0.84207 0.85135 1.90731 1.39249 1.28119 1.87127 1.45883 1.53237 1.32238 1.04481 1.20705 0.98433 0.92091 0.83144 0.91606 1.22073 1.00001 0.97329 1.01801 1.23242 0.98871 0.95611 0.94389 1.22524 0.94846 0.97694 0.85055 1.46332 1.77054 1.07964 1.07384 1.19993 1.39109 0.89663 0.93203 0.93282 1.27059 0.98903 1.10609 0.91137 1.71008 1.55995 1.04363 1.30069 0.83332 0.77273 0.70945 0.75986 1.19643 1.18303 1.23302 1.22863 0.95281 0.87058 0.97168 1.19444 0.96397 0.94270 0.94930 1.21090 0.98198 0.93723 0.95431 1.21286 0.97475 1.02094 0.93436 1.17995 1.01941 0.90364 0.87101 1.91489 1.87845 1.81633 1.51104 1.17859 0.98018 0.90131 0.91542 1.91495 1.72778 1.80720 1.67047 1.21162 0.98024 1.02298 0.92010 0.91719 0.89580 0.89738 0.74772 0.90483 0.92614 0.91560 0.86425 0.92758 0.94589 0.94417 0.93353 0.93089 0.83347 0.81789 0.81716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 8.91 71.98 0.64 -0.10 16 2 C -0.07 -0.69 2.90 -12.28 -0.04 -0.73 16 3 H 0.13 0.87 7.87 -2.38 -0.02 0.85 16 4 C 0.52 9.17 6.98 87.66 0.61 9.78 16 5 O -0.57 -15.12 14.75 -3.02 -0.04 -15.16 16 6 N -0.71 -11.24 4.85 -442.54 -2.14 -13.38 16 7 C 0.16 3.54 2.34 44.99 0.11 3.64 16 8 H 0.07 1.82 7.42 -2.39 -0.02 1.80 16 9 C -0.15 -2.85 9.48 71.98 0.68 -2.16 16 10 C -0.10 -2.75 3.52 -10.37 -0.04 -2.78 16 11 C 0.12 4.28 8.13 83.17 0.68 4.95 16 12 N -0.66 -30.80 3.62 -737.99 -2.67 -33.47 16 13 C -0.29 -16.85 11.03 84.03 0.93 -15.92 16 14 H 0.05 3.06 8.06 -2.91 -0.02 3.03 16 15 C -0.08 -5.07 5.50 84.86 0.47 -4.61 16 16 N -0.97 -62.63 13.70 21.65 0.30 -62.33 16 17 Si 1.10 52.95 25.50 68.60 1.75 54.70 16 18 H -0.27 -11.93 6.97 99.48 0.69 -11.24 16 19 H -0.26 -11.27 5.66 99.48 0.56 -10.71 16 20 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 21 C 0.10 3.82 5.17 83.26 0.43 4.25 16 22 C -0.05 -0.71 4.40 -19.87 -0.09 -0.80 16 23 C -0.07 -0.98 7.92 22.27 0.18 -0.80 16 24 C -0.12 -1.94 10.02 22.30 0.22 -1.72 16 25 C 0.05 0.92 7.31 22.41 0.16 1.08 16 26 F -0.14 -3.19 17.18 44.97 0.77 -2.42 16 27 C 0.04 0.89 7.31 22.41 0.16 1.05 16 28 F -0.14 -3.22 17.18 44.97 0.77 -2.44 16 29 C -0.12 -1.80 9.65 22.31 0.22 -1.59 16 30 H 0.06 0.39 7.40 -2.39 -0.02 0.37 16 31 H 0.09 0.23 7.57 -2.39 -0.02 0.21 16 32 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.42 4.24 8.02 -92.71 -0.74 3.50 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 40 H 0.25 15.98 8.73 -92.70 -0.81 15.17 16 41 H 0.05 1.82 6.87 -2.39 -0.02 1.81 16 42 H 0.05 1.96 6.22 -2.38 -0.01 1.94 16 43 H 0.15 1.86 7.51 -2.91 -0.02 1.84 16 44 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.17 1.79 7.94 -2.91 -0.02 1.77 16 Total: -1.00 -77.86 375.72 4.13 -73.72 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.08 Total: 7.25 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 5.32 Total: -6.46 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -4.52 Total: -109.19 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.04 Total: -15.16 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 1.55 Total: -4.86 kcal Atomic # 14 Polarization: 52.95 SS G_CDS: 1.75 Total: 54.70 kcal Total: -77.86 4.13 -73.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675362893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.971 kcal (2) G-P(sol) polarization free energy of solvation -77.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds