Wall clock time and date at job start Tue Mar 31 2020 21:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46706 * 2 1 4 4 C 1.50702 * 109.46814 * 119.99853 * 2 1 3 5 5 O 1.21279 * 119.99662 * 120.00125 * 4 2 1 6 6 N 1.34774 * 119.99938 * 299.99770 * 4 2 1 7 7 C 1.46507 * 119.99516 * 180.02562 * 6 4 2 8 8 H 1.08998 * 109.47050 * 324.99981 * 7 6 4 9 9 C 1.53000 * 109.47399 * 85.00274 * 7 6 4 10 10 C 1.53001 * 109.46858 * 205.00269 * 7 6 4 11 11 C 1.53942 * 113.74218 * 161.82332 * 10 7 6 12 12 N 1.47818 * 86.03565 * 222.08051 * 11 10 7 13 13 C 1.36934 * 134.45755 * 204.64402 * 12 11 10 14 14 H 1.07996 * 120.00017 * 179.86989 * 13 12 11 15 15 C 1.38811 * 120.00124 * 359.86613 * 13 12 11 16 16 N 1.31626 * 119.99681 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00288 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47305 * 89.99546 * 17 15 13 19 19 H 1.48494 * 109.47151 * 210.00165 * 17 15 13 20 20 H 1.48499 * 109.46813 * 329.99779 * 17 15 13 21 21 C 1.47588 * 91.05015 * 24.54828 * 12 11 10 22 22 C 1.50694 * 109.46882 * 239.99893 * 2 1 3 23 23 C 1.38256 * 119.96741 * 300.02199 * 22 2 1 24 24 C 1.38213 * 120.07044 * 180.02562 * 23 22 2 25 25 C 1.38405 * 120.00123 * 359.97438 * 24 23 22 26 26 F 1.35104 * 120.03429 * 180.02562 * 25 24 23 27 27 C 1.38650 * 119.93017 * 359.73185 * 25 24 23 28 28 F 1.35098 * 120.03760 * 180.29978 * 27 25 24 29 29 C 1.38216 * 119.96001 * 120.00310 * 22 2 1 30 30 H 1.09001 * 109.47180 * 299.99882 * 1 2 3 31 31 H 1.08998 * 109.47323 * 60.00059 * 1 2 3 32 32 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 33 33 H 0.96991 * 120.00571 * 0.02562 * 6 4 2 34 34 H 1.08998 * 109.46978 * 180.02562 * 9 7 6 35 35 H 1.09002 * 109.46623 * 300.06373 * 9 7 6 36 36 H 1.08995 * 109.47156 * 60.06065 * 9 7 6 37 37 H 1.09000 * 112.94222 * 293.41259 * 10 7 6 38 38 H 1.08998 * 113.76931 * 336.33872 * 11 10 7 39 39 H 1.09001 * 113.77069 * 107.74260 * 11 10 7 40 40 H 0.97005 * 119.99665 * 179.97438 * 16 15 13 41 41 H 1.08997 * 113.76747 * 221.15617 * 21 12 11 42 42 H 1.08999 * 113.86762 * 89.76944 * 21 12 11 43 43 H 1.08000 * 119.96000 * 359.97436 * 23 22 2 44 44 H 1.08003 * 119.99573 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00310 * 359.97153 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6508 8 1 2.2325 -2.0130 3.4615 9 6 3.5980 -0.4343 3.9944 10 6 1.2515 -0.6613 4.8221 11 6 1.3973 -1.6577 5.9865 12 7 -0.0796 -1.6441 6.0479 13 6 -1.0011 -1.9007 7.0276 14 1 -2.0560 -1.8158 6.8124 15 6 -0.5795 -2.2701 8.2975 16 7 0.7062 -2.3741 8.5597 17 14 -1.8366 -2.6209 9.6339 18 1 -2.1998 -4.0606 9.6063 19 1 -1.2583 -2.2816 10.9589 20 1 -3.0511 -1.7994 9.3989 21 6 -0.1619 -1.2407 4.6306 22 6 2.0323 -0.7104 -1.2304 23 6 1.6975 -2.0339 -1.4487 24 6 2.1574 -2.6877 -2.5762 25 6 2.9536 -2.0173 -3.4885 26 9 3.4031 -2.6556 -4.5912 27 6 3.2844 -0.6883 -3.2727 28 9 4.0564 -0.0301 -4.1648 29 6 2.8269 -0.0380 -2.1397 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.1489 0.5385 2.5436 34 1 3.9617 -0.9483 4.8841 35 1 4.2702 -0.6320 3.1595 36 1 3.5608 0.6383 4.1848 37 1 1.2591 0.3830 5.1345 38 1 1.8158 -2.6199 5.6915 39 1 1.8787 -1.2353 6.8685 40 1 1.0009 -2.6319 9.4473 41 1 -0.9228 -0.4860 4.4321 42 1 -0.2026 -2.0789 3.9351 43 1 1.0766 -2.5577 -0.7370 44 1 1.8955 -3.7218 -2.7454 45 1 3.0872 0.9961 -1.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675362894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:56 Heat of formation + Delta-G solvation = -55.182239 kcal Electronic energy + Delta-G solvation = -28800.376430 eV Core-core repulsion = 24455.412158 eV Total energy + Delta-G solvation = -4344.964272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.69996 -48.77784 -40.55970 -39.05936 -37.96170 -34.85362 -34.34560 -32.17192 -31.22854 -30.56642 -29.12631 -27.50861 -25.32976 -24.70379 -24.02830 -23.57717 -22.58278 -21.05824 -20.20513 -19.11883 -18.21324 -17.65413 -17.33199 -16.81604 -16.60736 -16.44548 -16.06913 -15.48426 -15.19346 -14.86848 -14.74753 -14.47177 -14.43747 -14.20193 -13.98124 -13.61001 -13.42450 -13.18351 -13.09231 -12.72972 -12.39082 -12.17960 -12.11725 -11.91234 -11.76763 -11.62468 -11.44497 -11.35765 -11.24485 -10.91399 -10.69271 -10.38777 -10.08723 -9.85074 -9.67191 -9.46571 -9.31912 -8.89898 -8.88529 -8.81455 -6.90565 -5.79539 -3.11776 0.60861 0.72364 2.61906 2.93452 3.31780 3.37063 3.41726 3.43857 3.51341 3.99377 4.12022 4.26790 4.42574 4.59484 4.70721 4.75193 4.81170 4.90263 5.08296 5.14442 5.28546 5.36867 5.41665 5.46333 5.49703 5.51327 5.60618 5.61906 5.73666 5.78554 5.82924 5.96630 6.03865 6.07020 6.23499 6.31496 6.40924 6.45064 6.54882 6.58743 6.76385 7.19384 7.32842 7.52746 7.57096 7.95499 8.24745 9.01929 9.68320 10.57072 11.37683 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026328 B = 0.002070 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.252506 B =13520.294700 C =13729.103479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 H 0.108 0.892 4 C 0.516 3.484 5 O -0.534 6.534 6 N -0.715 5.715 7 C 0.151 3.849 8 H 0.087 0.913 9 C -0.158 4.158 10 C -0.147 4.147 11 C 0.175 3.825 12 N -0.612 5.612 13 C -0.224 4.224 14 H 0.079 0.921 15 C -0.008 4.008 16 N -0.921 5.921 17 Si 0.912 3.088 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.126 3.874 22 C -0.045 4.045 23 C -0.063 4.063 24 C -0.125 4.125 25 C 0.065 3.935 26 F -0.131 7.131 27 C 0.063 3.937 28 F -0.131 7.131 29 C -0.119 4.119 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.399 0.601 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.254 0.746 41 H 0.040 0.960 42 H 0.032 0.968 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.004 7.337 -22.254 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.095 4.095 3 H 0.126 0.874 4 C 0.300 3.700 5 O -0.411 6.411 6 N -0.366 5.366 7 C 0.046 3.954 8 H 0.105 0.895 9 C -0.216 4.216 10 C -0.167 4.167 11 C 0.050 3.950 12 N -0.339 5.339 13 C -0.351 4.351 14 H 0.097 0.903 15 C -0.205 4.205 16 N -0.568 5.568 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.206 1.206 21 C 0.000 4.000 22 C -0.046 4.046 23 C -0.081 4.081 24 C -0.144 4.144 25 C 0.045 3.955 26 F -0.110 7.110 27 C 0.043 3.957 28 F -0.110 7.110 29 C -0.137 4.137 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.046 0.954 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.444 6.531 -22.051 23.254 hybrid contribution -0.588 0.038 0.437 0.734 sum 2.855 6.569 -21.614 22.770 Atomic orbital electron populations 1.21835 0.91300 1.03617 1.03353 1.20337 0.98221 1.00387 0.90532 0.87368 1.20284 0.80483 0.84740 0.84451 1.90734 1.37644 1.26089 1.86589 1.46116 1.53021 1.31941 1.05485 1.21126 0.93393 0.97575 0.83293 0.89457 1.22106 0.96436 1.01210 1.01877 1.23855 0.95579 1.01363 0.95897 1.22229 0.86034 0.93357 0.93424 1.45994 1.02449 1.80618 1.04793 1.19012 0.87686 1.39791 0.88626 0.90320 1.24787 0.96243 1.01940 0.97516 1.69810 1.12488 1.53554 1.20984 0.86127 0.80180 0.78073 0.81422 1.21617 1.21611 1.20640 1.22520 0.93721 0.95630 0.88108 1.19225 0.96635 0.94148 0.94582 1.20923 0.98175 0.93517 0.95516 1.21078 0.98086 1.01295 0.93949 1.17712 1.01005 0.89986 0.86795 1.91523 1.87551 1.81435 1.50483 1.17559 0.97584 0.89759 0.90807 1.91522 1.72609 1.80441 1.66395 1.20907 0.98827 1.01284 0.92716 0.90977 0.91105 0.91438 0.76745 0.91107 0.92851 0.92783 0.89358 0.95443 0.90720 0.93606 0.94195 0.95092 0.84221 0.83599 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.90 37.16 0.33 -0.55 16 2 C -0.07 -0.57 2.90 -92.92 -0.27 -0.84 16 3 H 0.11 0.59 7.87 -51.93 -0.41 0.19 16 4 C 0.52 5.87 6.99 -10.99 -0.08 5.79 16 5 O -0.53 -8.18 14.77 5.56 0.08 -8.09 16 6 N -0.72 -7.83 4.84 -53.80 -0.26 -8.09 16 7 C 0.15 2.12 2.29 -67.93 -0.16 1.97 16 8 H 0.09 1.45 7.48 -51.93 -0.39 1.06 16 9 C -0.16 -2.08 9.44 37.16 0.35 -1.73 16 10 C -0.15 -2.45 3.35 -89.69 -0.30 -2.76 16 11 C 0.18 3.93 6.98 -2.84 -0.02 3.91 16 12 N -0.61 -15.24 3.70 -177.69 -0.66 -15.90 16 13 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 14 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 16 N -0.92 -26.96 11.39 55.49 0.63 -26.33 16 17 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.13 2.39 8.38 -2.96 -0.02 2.37 16 22 C -0.05 -0.41 4.40 -104.63 -0.46 -0.87 16 23 C -0.06 -0.60 7.92 -39.58 -0.31 -0.91 16 24 C -0.13 -1.16 10.02 -39.53 -0.40 -1.56 16 25 C 0.07 0.69 7.31 -39.37 -0.29 0.40 16 26 F -0.13 -1.51 17.18 2.25 0.04 -1.47 16 27 C 0.06 0.66 7.31 -39.36 -0.29 0.37 16 28 F -0.13 -1.47 17.18 2.25 0.04 -1.44 16 29 C -0.12 -1.04 9.65 -39.52 -0.38 -1.42 16 30 H 0.07 0.39 7.56 -51.93 -0.39 0.00 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.47 7.39 -51.93 -0.38 0.08 16 33 H 0.40 3.38 8.02 -40.82 -0.33 3.06 16 34 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 39 H 0.07 1.86 7.17 -51.93 -0.37 1.48 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.03 0.59 8.10 -51.93 -0.42 0.17 16 43 H 0.14 1.27 7.51 -52.49 -0.39 0.88 16 44 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 45 H 0.14 0.93 7.94 -52.49 -0.42 0.51 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -32.98 382.04 -8.37 -41.34 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.42 Total: -0.13 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.55 Total: -2.49 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.29 Total: -50.32 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.09 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.08 Total: -2.91 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.98 -8.37 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675362894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.840 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds